View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16817_high_31 (Length: 383)
Name: NF16817_high_31
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_31 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 21929368 - 21929741
Alignment:
| Q |
16 |
cagatactgatccctaaacacatatcaagtagaaaagaataagcataatttaacttttttatgatcacttacattactcaaaaactcaaatcatgcccta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21929368 |
cagatactgatccctaaacacatatcaagtagaaaagaataagcataatttaacttttttatgatcacttacattactcaaaaattcaaatcatgcccta |
21929467 |
T |
|
| Q |
116 |
tatatgtatcaattgaatgaatccaatccttttgtgtaatggccaagtggcattgtttgaatttatatcacttattttaaaagataattttaaaccacaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| || |
|
|
| T |
21929468 |
tatatgtatcaattgaatgaatccaatccttttgtgtaatggccaagtggcattgtttgaatttatatcacttgttttaaaagataatcttagaccataa |
21929567 |
T |
|
| Q |
216 |
ccaaagatgataattcaagtcatggttttaaattgcagtcgcagttgcggttaagctacaaactattatattgtcaaaaattgcggtcaaaa------tt |
309 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
21929568 |
ccaaagatgataatttaagtcatggttttaaattgcagtcgcagttgcggttaagctacatactattatattgtcaaaaattgcggtcaaaattgcggtt |
21929667 |
T |
|
| Q |
310 |
gtggttgtgatacctcaaaatcttttatatcacaaccgtaattgaagttacagaccgtaatttaaaaccatgat |
383 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
21929668 |
gtgattgtgatacctcaaaatcttttatatcacaaccgtaattgaatttaccgaccgcaatttaaaaccatgat |
21929741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University