View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_high_32 (Length: 380)

Name: NF16817_high_32
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_high_32
NF16817_high_32
[»] chr7 (1 HSPs)
chr7 (83-372)||(30347690-30347976)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 83 - 372
Target Start/End: Complemental strand, 30347976 - 30347690
Alignment:
Q  83 taagacacacatggggatggg-tactcccttaggattcaatttgttgtgaagcatgctatgattacgtatacatatatagtcaagctacatatcattaat 181  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  30347976 taagacacacatggggatggggtactcccttaggattcaatttgttgtgaagcatgctatgattacgtatacata----gtcaagctacatatcattaat 30347881  T
Q  182 aaattagtttggtgagtgaaagggacatacacacttacgcaatagtggaatacacatgatttcgacttgttaatttaaaagcacttatacgtggacatct 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30347880 aaattagtttggtgagtgaaagggacatacacacttacgcaatagtggaatacacatgatttcgacttgttaatttaaaagcacttatacgtggacatct 30347781  T
Q  282 catattttcataaatagcaattatatttgtatcccataaatagcaataatatatttcatttatcacatcattttctctattttttcatctc 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30347780 catattttcataaatagcaattatatttgtatcccataaatagcaataatatatttcatttatcacatcattttctctattttttcatctc 30347690  T

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