View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_38 (Length: 345)
Name: NF16817_high_38
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 69 - 324
Target Start/End: Complemental strand, 45051689 - 45051434
Alignment:
| Q |
69 |
ttcgagactttgagtttccttaggttgcaaatataataatcagttgtttgcatttccatttccattctattgcatttatcacaaatattattgagaaaat |
168 |
Q |
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| T |
45051689 |
ttcgagactttgagtttccttagattgcaaatataataatcagttgtttgcatttccatttccattctattgcatttatcacaaatattattgagaaaat |
45051590 |
T |
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| Q |
169 |
taattctaattactccaccggcattatgactacattttagtacaaagttatagaggctatatccataccattctctcgattttcagttcttaatggattc |
268 |
Q |
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| T |
45051589 |
taattctaattactccaccgacattatgactacattttagtacaaagttatagaggctatatccataccattctctcgattttcagttcttaatggattc |
45051490 |
T |
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| Q |
269 |
ctaccgtaacatggtacacaaacgatccccttttatttatttatgtggtttcaaca |
324 |
Q |
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| T |
45051489 |
ctaccgtaacatggtacacaaacgattcccttttatttatttatgtggtttcaaca |
45051434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 45052318 - 45052279
Alignment:
| Q |
2 |
ttttttcctaggattaatacatatttgttttatggatttg |
41 |
Q |
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| T |
45052318 |
ttttttcctaggaataatacatatttgttttatggatttg |
45052279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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