View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_41 (Length: 333)
Name: NF16817_high_41
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 44409621 - 44409922
Alignment:
| Q |
17 |
cagttggtgatgccaataatgcatgtgaaggttctatgaccgtagaagcatttgctggtagagacactgttcaagttccatatcaatctaagggtaaagg |
116 |
Q |
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| T |
44409621 |
cagttggtgatgccaataatgcatgtgaaggttctatgaccgtagaagcatttgctggtagagacactgttcaagttccatatcaatctaagggtaaagg |
44409720 |
T |
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| Q |
117 |
agggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtactaggattaggttcctaagtacattttacaccatgaagaatgataactctggt |
216 |
Q |
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| T |
44409721 |
agggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtactaggattaggttcctaagtacattttacaccatgaagaatgataactctggt |
44409820 |
T |
|
| Q |
217 |
tctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgttatcccaacaaccatacctaagtagtatatatgctgcaaatcaaaatgctac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44409821 |
tctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgttatcccaacaaccatacctaagtag----tatgctgcaaatcaaaatgctac |
44409916 |
T |
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| Q |
317 |
cttcat |
322 |
Q |
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|||||| |
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| T |
44409917 |
cttcat |
44409922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 2287502 - 2287543
Alignment:
| Q |
216 |
ttctctttgtggacctgttattgatgatgtaaaattgcttag |
257 |
Q |
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|||||||||||| ||||||||||||||||| || |||||||| |
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| T |
2287502 |
ttctctttgtggtcctgttattgatgatgtcaagttgcttag |
2287543 |
T |
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