View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_42 (Length: 328)
Name: NF16817_high_42
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 30890033 - 30889732
Alignment:
| Q |
11 |
caaagggactcggatcattactcgacactttagaaattagcatacttcctcttgaacctccaccttcaggaggactattttcatgcatgctactaaagag |
110 |
Q |
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| T |
30890033 |
caaagggactcggatcattactcgacactttagaaattagcatacttcctcttgaacctccaccttcaggaggactattttcatgcatgctactaaagag |
30889934 |
T |
|
| Q |
111 |
attgacaatattgtccttaatactataagaaacatgggaagtcgtgcttccttggcgcgaaattgttaacatgcctcccgatattgtgctattttgtctg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
30889933 |
attgacaatattgtccttaatactataagaaacatgggaagtcgtgcttccttggcgcgaaattgttaacatgcctcccgatatcgtgctactttgtctg |
30889834 |
T |
|
| Q |
211 |
gttacttgttgtgcaatcattgaaagttctccttgattaggtccataaagctttatacaatccttcccagcttccttgtttgaaaggagctcacttgctg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30889833 |
gttacttgttgtgcaatcattgaaagttctccttgattaggtccataaagctttatgcaatccttcccagcttccttgtttgaaaggagctcacttgctg |
30889734 |
T |
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| Q |
311 |
gg |
312 |
Q |
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|| |
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| T |
30889733 |
gg |
30889732 |
T |
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