View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_49 (Length: 300)
Name: NF16817_high_49
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 285
Target Start/End: Complemental strand, 45130494 - 45130216
Alignment:
| Q |
7 |
gatgatgtgattatagcaccaagccataaccagttatttgggcctaatacagctgagataggagaatctgagaggtttgttttaaaccatatagtttgga |
106 |
Q |
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| T |
45130494 |
gatgatgtgattatagcaccaagccataaccagttatttgggcctaatacagctgagataggagaatctgagaggtttgttttaaaccatatagtttgga |
45130395 |
T |
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| Q |
107 |
tttgtttttgagtatctcttgaaggttcttctttttctcttgtgatgtaagcttcaatttgtaacggaagctgtgaaatttgagttgttgaaccagaaac |
206 |
Q |
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| T |
45130394 |
tttgtttttgagtatctcttgaaggctcttctttttctcttgtgatgtaagcttcaatttgtaacggaagctgtgaaatttgagttgttgaaccagaaac |
45130295 |
T |
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| Q |
207 |
aggaagcataagatctaacatggctagatcaacatagtttttgaaaatacaaacaagtaggagttttggaggttgaaat |
285 |
Q |
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| T |
45130294 |
aggaagcataagatctaacatggctagatcaacatagtttttgaaaatacaaacaagtaggagttttggaggttgaaat |
45130216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 45113590 - 45113316
Alignment:
| Q |
7 |
gatgatgtgattatagcaccaagccataaccagttatttgggcctaatacagctgagataggagaatctgagaggtttgttttaaaccatatagtttgga |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
45113590 |
gatgatgtgattatagcaccaagccataaccagttatttgggcctaatacagctgagataggacaatcagagaggtttgttttaaaccatatcgtttgga |
45113491 |
T |
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| Q |
107 |
tttgtttttgagtatctcttgaaggttcttctttttctcttgtgatgtaagcttcaatttgtaacggaagctgtgaaatttgagttgttgaaccagaaac |
206 |
Q |
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| T |
45113490 |
tttgtttttgagtatcttttgaaggttcttgtttttctcttgtgatgtaagcttcaatttgtaactgaagctgagagattcgagtttttaaaccagaaat |
45113391 |
T |
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| Q |
207 |
aggaagcataagatctaacatggctagatcaacatagtttttgaaaatacaaacaagtaggagttttggaggttg |
281 |
Q |
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| T |
45113390 |
aggaagcataagatctaacatggttagatcagcgtagtttttgaaaatacaaacaagtaggagttttggaggttg |
45113316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 45112922 - 45112872
Alignment:
| Q |
235 |
tcaacatagtttttgaaaatacaaacaagtaggagttttggaggttgaaat |
285 |
Q |
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| T |
45112922 |
tcaacatagtttttgaaaatacaaacaagtaggagttttggaggttgaaat |
45112872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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