View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_67 (Length: 249)
Name: NF16817_high_67
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_67 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 35 - 249
Target Start/End: Complemental strand, 36949954 - 36949740
Alignment:
| Q |
35 |
cttattaatgtcaatagacacatggtatgttttttctcccttcccatctatgcccccttggtttgttgcatatattttgcttgaaaaggattcttaagtg |
134 |
Q |
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| T |
36949954 |
cttattaatgtcaatagacacatggtatgttttttctcccttcccatctatgcccccttggtttgttgcatatattttgcttgaaaaggattcttaagtg |
36949855 |
T |
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| Q |
135 |
tgttatatatataggtcaacaatgttagtaatgattaacattatcgtcaaaatggtgtgttattttctccaggtagcatacgtgcatgcatttatagtct |
234 |
Q |
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| T |
36949854 |
tgttatatatataggtcaacaatgttagtaataattaacattatcgtcaaaatggtgtgttattttctccaggtagcatacgtgcatgcttttatagtct |
36949755 |
T |
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| Q |
235 |
tgtaattcgtaaact |
249 |
Q |
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| T |
36949754 |
tgtaattcgtaaact |
36949740 |
T |
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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 10818138 - 10818210
Alignment:
| Q |
40 |
taatgtcaatagacacatggtatgttttttctcccttcccatctatgcccccttggtttgttgcatatatttt |
112 |
Q |
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|||||||| |||||||||||||||||| |||||||||| ||||| ||||||||| | |||||||||||||||| |
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| T |
10818138 |
taatgtcactagacacatggtatgtttattctcccttctcatctttgcccccttcgattgttgcatatatttt |
10818210 |
T |
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