View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_69 (Length: 245)
Name: NF16817_high_69
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_69 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 46160150 - 46159912
Alignment:
| Q |
1 |
atcacctttcctcacactatatccatccggcaacgtgtcatctgaaaaaacaatacttgctttcctatagacaaacaccataacatgaaattaattaaga |
100 |
Q |
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| T |
46160150 |
atcacctttcctcacactatatccatccggcaacgtgtcatctgaaaaa-caatacttgctttcctatagacaaacaccataacatgaaattaattaaga |
46160052 |
T |
|
| Q |
101 |
ggttcaattttttatctaactcttctaaagtgaacaacaaatgtaaagtgagtaacataaattgttgatgattaaattaaacactaatattcgttaacaa |
200 |
Q |
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| T |
46160051 |
ggttcaattttttat-taactcttctaaagtgaacaacaaatgtaaagtgagtaatataaattgttgatgattaaattaaacactaatattcgttaacaa |
46159953 |
T |
|
| Q |
201 |
ctagtaacaaatgattaaagaaaacgcagattgagaataat |
241 |
Q |
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| T |
46159952 |
ctagtaacaaatgattaaagaaaacgcaaattgaaaataat |
46159912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 46167012 - 46166787
Alignment:
| Q |
1 |
atcacctttcctcacactatatccatccggcaacgtgtcatctgaaaaaacaatacttgctttcctatagacaaacaccataacatgaaattaattaaga |
100 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
46167012 |
atcacctttcgtaacactatatccatccggcaacgtgtcatctgaaaaa-caatacttgctttcctatagacaaacaccataacatgaaactagttaaga |
46166914 |
T |
|
| Q |
101 |
ggttcaatttttt-atctaactcttctaaagtgaacaacaaatgtaaagtgagtaacataaattgttgatgattaaattaaacactaatattcgttaaca |
199 |
Q |
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| T |
46166913 |
ggttcaatttttttatctaactcttctaaagtgaacaacaaatgtaaagtgagtaatataaattgttgatgattaaattaaagactaatattctttaaca |
46166814 |
T |
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| Q |
200 |
actagtaacaaatgattaaagaaaacg |
226 |
Q |
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| T |
46166813 |
actagtaacagaagattcaagaaaacg |
46166787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 5948842 - 5948874
Alignment:
| Q |
193 |
gttaacaactagtaacaaatgattaaagaaaac |
225 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
5948842 |
gttaataactagtaacaaatgattaaagaaaac |
5948874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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