View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_77 (Length: 208)
Name: NF16817_high_77
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_77 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 43936202 - 43936025
Alignment:
| Q |
12 |
cagcacagacaagttttatggttctcagcttttctctccttaattacgatttttggatgctttgagtttcatccaacacannnnnnntggccctcctcat |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43936202 |
cagctcagacaagttttatggttctcagcttttctctccttaattacgatttttggatgctttgagtttcatccaacacaccccccctggccctcctcat |
43936103 |
T |
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| Q |
112 |
tactcgtacataacagtacagtggaaaataaaaccaacaataatgccaataatccacttcaatcagtacaatgcaatc |
189 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43936102 |
tactcgtacataacagtacagtggaaaataaaaccaaaaataatgccaataatccacttcaatcagtacaatgcaatc |
43936025 |
T |
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