View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_high_9 (Length: 560)

Name: NF16817_high_9
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_high_9
NF16817_high_9
[»] chr8 (11 HSPs)
chr8 (290-551)||(9765346-9765606)
chr8 (332-551)||(18141459-18141678)
chr8 (409-549)||(26402840-26402979)
chr8 (403-549)||(6127569-6127715)
chr8 (296-434)||(26402684-26402823)
chr8 (290-435)||(6127725-6127871)
chr8 (328-435)||(5688885-5688992)
chr8 (328-435)||(40320720-40320827)
chr8 (409-551)||(30291308-30291450)
chr8 (290-435)||(8149939-8150081)
chr8 (471-551)||(5689048-5689128)
[»] chr5 (5 HSPs)
chr5 (290-549)||(10282098-10282357)
chr5 (290-535)||(28277695-28277937)
chr5 (290-435)||(3881233-3881379)
chr5 (292-401)||(16642553-16642662)
chr5 (404-436)||(3881190-3881222)
[»] chr7 (10 HSPs)
chr7 (289-551)||(29160151-29160408)
chr7 (328-548)||(24526210-24526452)
chr7 (328-535)||(22269371-22269598)
chr7 (328-413)||(12098247-12098332)
chr7 (355-551)||(41317758-41317953)
chr7 (471-551)||(8153107-8153187)
chr7 (328-420)||(8152988-8153080)
chr7 (483-551)||(36146733-36146801)
chr7 (479-551)||(12098183-12098255)
chr7 (328-363)||(41317963-41317998)
[»] chr3 (13 HSPs)
chr3 (332-551)||(9666778-9666997)
chr3 (329-551)||(44700802-44701024)
chr3 (291-435)||(25796280-25796424)
chr3 (290-535)||(28073999-28074241)
chr3 (289-427)||(3715440-3715579)
chr3 (290-431)||(47650074-47650216)
chr3 (403-548)||(3715597-3715740)
chr3 (403-551)||(47649914-47650060)
chr3 (330-435)||(29196858-29196963)
chr3 (416-551)||(25796124-25796257)
chr3 (329-435)||(31314156-31314257)
chr3 (404-487)||(29196763-29196847)
chr3 (331-378)||(24177031-24177078)
[»] chr4 (11 HSPs)
chr4 (365-548)||(46147669-46147852)
chr4 (332-551)||(36463712-36463931)
chr4 (290-435)||(24334553-24334698)
chr4 (427-551)||(52467665-52467789)
chr4 (328-551)||(45687507-45687729)
chr4 (16-104)||(14490239-14490327)
chr4 (331-549)||(3793592-3793831)
chr4 (403-488)||(24334460-24334543)
chr4 (332-404)||(52467791-52467863)
chr4 (214-291)||(14459082-14459156)
chr4 (290-327)||(3792486-3792523)
[»] chr6 (5 HSPs)
chr6 (289-431)||(21800870-21801012)
chr6 (330-435)||(3039361-3039467)
chr6 (465-551)||(21801010-21801096)
chr6 (471-548)||(3039228-3039305)
chr6 (523-551)||(14522019-14522047)
[»] chr1 (19 HSPs)
chr1 (290-549)||(40816287-40816567)
chr1 (289-551)||(19073273-19073508)
chr1 (289-551)||(19121163-19121398)
chr1 (290-435)||(47703387-47703532)
chr1 (409-549)||(47703548-47703686)
chr1 (290-434)||(47255992-47256133)
chr1 (329-435)||(28266014-28266120)
chr1 (292-452)||(17345045-17345205)
chr1 (471-551)||(50167499-50167579)
chr1 (471-551)||(50169521-50169601)
chr1 (328-420)||(50167608-50167701)
chr1 (328-420)||(50169630-50169723)
chr1 (328-435)||(776883-776988)
chr1 (471-551)||(28265877-28265958)
chr1 (471-551)||(45644666-45644746)
chr1 (415-535)||(47255878-47255990)
chr1 (332-411)||(3580046-3580126)
chr1 (328-363)||(45644827-45644862)
chr1 (328-359)||(8871599-8871630)
[»] chr2 (12 HSPs)
chr2 (292-435)||(42269872-42270016)
chr2 (290-435)||(31056546-31056692)
chr2 (409-551)||(34681944-34682085)
chr2 (409-551)||(42269714-42269856)
chr2 (414-550)||(8040411-8040546)
chr2 (328-488)||(33162802-33162962)
chr2 (331-435)||(34681824-34681928)
chr2 (329-551)||(36773185-36773406)
chr2 (403-551)||(31056388-31056536)
chr2 (499-551)||(33162760-33162812)
chr2 (354-427)||(11066953-11067026)
chr2 (331-413)||(6259239-6259322)
[»] scaffold0477 (2 HSPs)
scaffold0477 (290-435)||(5405-5552)
scaffold0477 (403-539)||(5562-5698)
[»] scaffold0148 (2 HSPs)
scaffold0148 (289-435)||(11231-11377)
scaffold0148 (403-549)||(11077-11221)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 290 - 551
Target Start/End: Original strand, 9765346 - 9765606
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttg 389  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  9765346 tgttgaaaattgactcaagaatttgatgttgaagcactgagaaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcatatttgggtttg 9765445  T
Q  390 tcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatgg 489  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  9765446 tcac-ggaaaaatcatggcacgatccaggaggaacgtggcacgatgcagacagataaggtatagtactgtactatcacctgctccattgtggcacgatgg 9765544  T
Q  490 ggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    |||||||| ||||||||||||||| ||||| | ||||||||||||||||||||| |||||||    
T  9765545 ggtcgaaacgtggcacgatgctgcgtattcctgaacactatttaaggcttctttattcattt 9765606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 332 - 551
Target Start/End: Original strand, 18141459 - 18141678
Alignment:
Q  332 aatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtggcac 431  Q
    ||||||||||||||||||||||||||| |||| |||| | ||||||| ||| || ||| ||||||||||||  ||| |||||||||||||||||||||||    
T  18141459 aatcgtggcacgtttgcagggcaacgtcgcacgattgaacggttcagtttttgggttgccactggaaaaattatggcacgatccaggaggaacgtggcac 18141558  T
Q  432 gatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatt 531  Q
    |||| ||||||||||||||||||| |||| ||||| |||| ||||| |||||||||||| |||||| ||||||||||||||| ||||| | |||||||||    
T  18141559 gatgcagacggataaggtatagtattgtactatcatctgccccatcgtggcacgatgggctcgaaacgtggcacgatgctgcgtattcctgaacactatt 18141658  T
Q  532 taaggcttctttcttcattt 551  Q
    ||||||||| ||||||||||    
T  18141659 taaggcttcattcttcattt 18141678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 409 - 549
Target Start/End: Original strand, 26402840 - 26402979
Alignment:
Q  409 acgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgat 508  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |||||||||||   ||||| ||||||||||    
T  26402840 acgatccaggaggaacgtggcacgatgtggacggataaggtatagtactgtactat-acctgctccatcgtggcacgatggacacgaaacgtggcacgat 26402938  T
Q  509 gctgcatattcttaaacactatttaaggcttctttcttcat 549  Q
    ||||| ||||  | |||||||||||||||||||||||||||    
T  26402939 gctgcgtatttctgaacactatttaaggcttctttcttcat 26402979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 403 - 549
Target Start/End: Complemental strand, 6127715 - 6127569
Alignment:
Q  403 cgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtgg 502  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |   ||||| ||||    
T  6127715 cgtggcacgatccaggaagaacgtggcacgatgtggacggataaggtatagtactgtactatcacctgctccatcgtggcacgattgacacgaaacgtgg 6127616  T
Q  503 cacgatgctgcatattcttaaacactatttaaggcttctttcttcat 549  Q
    ||||||||||| ||||  | ||||||||||||| |||||||||||||    
T  6127615 cacgatgctgcgtatttctgaacactatttaagacttctttcttcat 6127569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 296 - 434
Target Start/End: Original strand, 26402684 - 26402823
Alignment:
Q  296 aaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcag-gtttgggtttgtcact 394  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| |  ||    
T  26402684 aaattgactcaagaattggatgttgaagcgctgagaaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcagattttgggtttatagct 26402783  T
Q  395 ggaaaaatcgtggtacgatccaggaggaacgtggcacgat 434  Q
    |||||| |||||| ||||| ||||| ||||||| ||||||    
T  26402784 ggaaaattcgtggcacgattcaggatgaacgtgacacgat 26402823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 290 - 435
Target Start/End: Complemental strand, 6127871 - 6127725
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcag-gtttgggttt 388  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||||| ||||||| ||||||||||||||  |||||||||    
T  6127871 tgttgaaaattgactcaagaattggatattgaagcactgagaaattgtagcacgtttgcagggcaatgtggcacgattggatggttcagattttgggttt 6127772  T
Q  389 gtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatg 435  Q
    ||| || ||||||| |||| ||||||||  ||||||||| |||||||    
T  6127771 gtcgctagaaaaattgtggcacgatccaataggaacgtgacacgatg 6127725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 5688885 - 5688992
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtg 427  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||  | ||||||||| ||||||||||| |||||||||||||||||||    
T  5688885 gaaaaatcgtggcacgtttgcagggcaacgtggcacgattgaatggttcagttttttggttgtcactgaaaaaatcgtggcacgatccaggaggaacgtg 5688984  T
Q  428 gcacgatg 435  Q
    ||||||||    
T  5688985 gcacgatg 5688992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 40320720 - 40320827
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtg 427  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||| || ||| ||||||||||||||||| || ||  ||||||||||||    
T  40320720 gaaaaatcgtggcatgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacaatgtaggaggaacgtg 40320819  T
Q  428 gcacgatg 435  Q
    ||||||||    
T  40320820 gcacgatg 40320827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 409 - 551
Target Start/End: Original strand, 30291308 - 30291450
Alignment:
Q  409 acgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgat 508  Q
    |||||||||||| ||| || ||||||| |||||||||||||| |||| |||| |||||||||||||||| |||||| ||||| ||||||   |||| |||    
T  30291308 acgatccaggagaaacatgacacgatgcagacggataaggtaaagtattgtactatcacctgctccatcgtggcacaatgggctcgaaacaaggcatgat 30291407  T
Q  509 gctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    | ||| ||||| | |||||||||||||| ||| ||||||||||    
T  30291408 gttgcgtattcctgaacactatttaaggtttcattcttcattt 30291450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 290 - 435
Target Start/End: Complemental strand, 8150081 - 8149939
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttg 389  Q
    |||||||||||||||||| ||||| ||| |||||  ||| |||||||||||||||||||||||||| ||||||| |||| ||||||||| ||| || |||    
T  8150081 tgttgaaaattgactcaa-aattg-atggtgaagt-ctggaaaatcgtggcacgtttgcagggcaatgtggcacgattgaatggttcagtttttgggttg 8149985  T
Q  390 tcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatg 435  Q
     |||| ||||| |||||| |||||| |||||||| ||| |||||||    
T  8149984 ccactagaaaattcgtggcacgatctaggaggaatgtgacacgatg 8149939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 471 - 551
Target Start/End: Original strand, 5689048 - 5689128
Alignment:
Q  471 ctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||||| |||||||||||| |||||| ||||||||||| ||  ||||| | |||||||||||||||||| ||||||||||    
T  5689048 ctccatcgtggcacgatgggctcgaaacgtggcacgatgttgggtattcctgaacactatttaaggcttcattcttcattt 5689128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 177; Significance: 4e-95; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 290 - 549
Target Start/End: Complemental strand, 10282357 - 10282098
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggttt-gggttt 388  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  10282357 tgttgaaaattgactcaagaattggatgttgaagcaccgagaaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgggttt 10282258  T
Q  389 gtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatg 488  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  10282257 gtcgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcagacggataaggtatagtactgtactatcaccaactccatcatggcacgatg 10282158  T
Q  489 gggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcat 549  Q
    ||  || || ||||||||||||||| ||||  | ||||||||||||||||| |||||||||    
T  10282157 ggcacgtaacgtggcacgatgctgcgtatttctgaacactatttaaggctt-tttcttcat 10282098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 290 - 535
Target Start/End: Original strand, 28277695 - 28277937
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttg 389  Q
    |||||||||||||||||| ||||| ||| |||||    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |    
T  28277695 tgttgaaaattgactcaa-aattg-atggtgaagtctagaaaaatcgtggcacgtttgcagggcaacgtggcacgattggatggtttaggtttgggtt-g 28277791  T
Q  390 tcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatgg 489  Q
    ||| ||||||||| |||| ||||||||||||||  ||||||||||  ||||||||||||| |||||||||| |||||||||||||| | | |||||||||    
T  28277792 tcattggaaaaattgtggcacgatccaggaggagtgtggcacgattcagacggataaggtgtagtactgtaatatcacctgctccaacgttgcacgatgg 28277891  T
Q  490 ggtcgaaatgtggcacgatgctgcatattcttaaacactatttaag 535  Q
    | |||||| |||| |||||||||| | ||| | |||||||||||||    
T  28277892 gctcgaaacgtggaacgatgctgcgttttcctgaacactatttaag 28277937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 290 - 435
Target Start/End: Complemental strand, 3881379 - 3881233
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcagg-tttgggttt 388  Q
    |||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  3881379 tgttgaaaattgactcaagaattgaatattgaagcactgataaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgggttt 3881280  T
Q  389 gtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatg 435  Q
     ||  |||||||||||||| |||||||||||||||||||| ||||||    
T  3881279 atcgttggaaaaatcgtggcacgatccaggaggaacgtggtacgatg 3881233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 16642662 - 16642553
Alignment:
Q  292 ttgaaaattgactcaagaattggatgttgaagcactg-aaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgt 390  Q
    |||||||||||||||| | ||||||||| |||  ||| |||||||||||||||||||||| |||||||||||| ||||||||||| | || |||| |||     
T  16642662 ttgaaaattgactcaaaatttggatgttaaagttctggaaaaatcgtggcacgtttgcagagcaacgtggcacgattggatggtttaagtctggg-ttgc 16642564  T
Q  391 cactggaaaaa 401  Q
    |||||||||||    
T  16642563 cactggaaaaa 16642553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 436
Target Start/End: Complemental strand, 3881222 - 3881190
Alignment:
Q  404 gtggtacgatccaggaggaacgtggcacgatgt 436  Q
    |||| ||||||||||||||||||||||||||||    
T  3881222 gtggcacgatccaggaggaacgtggcacgatgt 3881190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 289 - 551
Target Start/End: Complemental strand, 29160408 - 29160151
Alignment:
Q  289 gtgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacg-tttgcagggcaacgtggcacaattggatggttcaggtttgggtt 387  Q
    |||||||||||||||||||||||||||||| ||||||||||  |||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||    
T  29160408 gtgttgaaaattgactcaagaattggatgtggaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcaggtttggctt 29160309  T
Q  388 tgtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgat 487  Q
    ||||||| ||||||||  || ||||||||||||||||||||||||||||||  |||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  29160308 tgtcact-gaaaaatcaaggcacgatccaggaggaacgtggcacgatgtag-tggataaggtatactactgtactat-acctgctccatcatggcacgat 29160212  T
Q  488 ggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
     ||||||||| ||||||||||||||| ||    | |||||||||||||||||||||||||||||    
T  29160211 tgggtcgaaacgtggcacgatgctgcgta---ctgaacactatttaaggcttctttcttcattt 29160151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 328 - 548
Target Start/End: Complemental strand, 24526452 - 24526210
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcagg-tttgggtttgtcactggaaaaatcgtggtacgatccag--------- 417  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||             
T  24526452 gaaaaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgt 24526353  T
Q  418 ------------gaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcac 505  Q
                ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||||| |||||| ||||||     
T  24526352 ggcatgatggaagaggaacgtggcacgatgtagtcggataaggtatagtactgtactatcacctgctccatcgtggcatgatgggatcgaaacgtggcat 24526253  T
Q  506 gatgctgcatattcttaaacactatttaaggcttctttcttca 548  Q
    |||| ||| ||||| | |||||||||||  ||||| |||||||    
T  24526252 gatgttgcgtattcctgaacactatttagagcttcattcttca 24526210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 328 - 535
Target Start/End: Original strand, 22269371 - 22269598
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatc------------- 414  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||| ||||||                 
T  22269371 gaaaaatcgtggcacgtttgcagggcaacgtggcacgatttgatggttcaagtttggg-ttgtcactggaaaaatcgtggcacgatccaggaggagcatg 22269469  T
Q  415 --------caggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacg 506  Q
            ||||||||||||||||| ||  ||||||||||||| ||||| |||| |||||||||||||| | |||||||||||| |||||| ||||||||    
T  22269470 acacgattcaggaggaacgtggcacaattcagacggataaggtgtagtattgtactatcacctgctccaacgtggcacgatgggttcgaaacgtggcacg 22269569  T
Q  507 atgctgcatattcttaaacactatttaag 535  Q
    ||| ||| | ||| | |||||||||||||    
T  22269570 atgttgcgttttcctgaacactatttaag 22269598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 328 - 413
Target Start/End: Complemental strand, 12098332 - 12098247
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgat 413  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||| || ||| ||||||||||||||||| |||||    
T  12098332 gaaaaatcgtggcacgtttgcagggcaacgtgacacgattgaatggttcagtttttggattgccactggaaaaatcgtggcacgat 12098247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 355 - 551
Target Start/End: Complemental strand, 41317953 - 41317758
Alignment:
Q  355 acgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagt 454  Q
    ||||||||| |||| || |||||| ||| || ||| |||| |||||||||||| ||||| ||||||  ||||||||||||| ||  | |||||    |||    
T  41317953 acgtggcacgattgaattgttcagtttttgggttgccactcgaaaaatcgtggcacgatgcaggagatacgtggcacgatgcaggag-ataagagcaagt 41317855  T
Q  455 actgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    |||||| |   |||  ||||||| ||||| |||||| |||||| |||||||||||||||  || | | |||||||||||||||||| ||||||||||    
T  41317854 actgtactgctaccaactccatcgtggcaggatgggctcgaaacgtggcacgatgctgcggatacctgaacactatttaaggcttcattcttcattt 41317758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 471 - 551
Target Start/End: Original strand, 8153107 - 8153187
Alignment:
Q  471 ctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||||| |||||||||||| |||||| ||||||||||| ||| ||||| | |||||||||||||| ||| ||||||||||    
T  8153107 ctccatcgtggcacgatgggctcgaaacgtggcacgatgttgcgtattcctgaacactatttaaggtttcattcttcattt 8153187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 328 - 420
Target Start/End: Original strand, 8152988 - 8153080
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggag 420  Q
    ||||| ||||||||||||||||||||||| |||||  |||| ||||||||  ||| || ||| |||||||||||| |||| ||||| ||||||    
T  8152988 gaaaactcgtggcacgtttgcagggcaacatggcaggattgaatggttcaatttttgggttgacactggaaaaattgtggcacgatgcaggag 8153080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 483 - 551
Target Start/End: Complemental strand, 36146801 - 36146733
Alignment:
Q  483 acgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    |||||||  |||||| ||||||||||||||||||||| | |||| ||||||||||||| ||||||||||    
T  36146801 acgatggactcgaaacgtggcacgatgctgcatattcctgaacattatttaaggcttcattcttcattt 36146733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 551
Target Start/End: Complemental strand, 12098255 - 12098183
Alignment:
Q  479 tggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||||||||||   |||| ||||| ||||||||| ||||  | |||||||||||||||||| ||||||||||    
T  12098255 tggcacgatgggcatgaaacgtggcgcgatgctgcgtatttctgaacactatttaaggcttcattcttcattt 12098183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 41317998 - 41317963
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcac 363  Q
    |||||||||||||||||||| |||||||||||||||    
T  41317998 gaaaaatcgtggcacgtttgtagggcaacgtggcac 41317963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 332 - 551
Target Start/End: Complemental strand, 9666997 - 9666778
Alignment:
Q  332 aatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtggcac 431  Q
    |||||||||||||||||||||||||||||||| |||| | ||||||| ||| || ||| ||||||||||||||||| |||||||||||||||||||||||    
T  9666997 aatcgtggcacgtttgcagggcaacgtggcacgattgaagggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggcac 9666898  T
Q  432 gatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatt 531  Q
    |||| |||||||||||||||| || |||| |||||||||||||||| |||||||||||| || ||| ||||||||||| ||| ||||| | |||||||||    
T  9666897 gatgcagacggataaggtataatattgtactatcacctgctccatcgtggcacgatgggttcaaaacgtggcacgatgttgcgtattcgtgaacactatt 9666798  T
Q  532 taaggcttctttcttcattt 551  Q
    |||| |||| ||||||||||    
T  9666797 taagacttcattcttcattt 9666778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 329 - 551
Target Start/End: Complemental strand, 44701024 - 44700802
Alignment:
Q  329 aaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtgg 428  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||| || ||  ||||||||||||||||| |||||||||||||||||| |    
T  44701024 aaaaaccgtggcacgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttaccactggaaaaatcgtggcacgatccaggaggaacgtag 44700925  T
Q  429 cacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacact 528  Q
    ||||||| || |||||||| |||| || |||| ||||||||| |||||| |||||||||||| |||||| |||||| |||||||| ||||| | ||||||    
T  44700924 cacgatgcaggcggataagatataatattgtactatcacctgttccatcgtggcacgatgggctcgaaacgtggcatgatgctgcgtattcctgaacact 44700825  T
Q  529 atttaaggcttctttcttcattt 551  Q
    |||||||||||| ||||||||||    
T  44700824 atttaaggcttcattcttcattt 44700802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 25796424 - 25796280
Alignment:
Q  291 gttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgt 390  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  25796424 gttgaaaattgactcaagaattgaatgttgaagcggtgaaaaatcgtggcacgtttgcagggcaacgtggcacgattggatgattcaggttttggtttgt 25796325  T
Q  391 cactggaaaaatcgtggtacgatccaggaggaacgtggcacgatg 435  Q
    ||||||||||||||||  |||||||||||||||||||||||||||    
T  25796324 cactggaaaaatcgtgacacgatccaggaggaacgtggcacgatg 25796280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 290 - 535
Target Start/End: Original strand, 28073999 - 28074241
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttg 389  Q
    |||||||||||||||||| ||||| |||||||||    ||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||| || |||    
T  28073999 tgttgaaaattgactcaa-aattg-atgttgaagtttagaaaaattgtggcacgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttg 28074096  T
Q  390 tcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatgg 489  Q
     ||||||||||||||||| ||||||||||||||||||||||||||| ||   |||||| |  |||| |||| |   |||  ||||||| |||||||||||    
T  28074097 ccactggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcag-gagataagatcaagtattgtactgctaccaactccatcgtggcacgatgg 28074195  T
Q  490 ggtcgaaatgtggcacgatgctgcatattcttaaacactatttaag 535  Q
    | |||||| ||||||||||||||| | ||| | ||| |||||||||    
T  28074196 gctcgaaacgtggcacgatgctgcgttttcctgaactctatttaag 28074241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 289 - 427
Target Start/End: Original strand, 3715440 - 3715579
Alignment:
Q  289 gtgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacg-tttgcagggcaacgtggcacaattggatggttcaggtttgggtt 387  Q
    |||||||||||||||||||||||||||||||||||||||||  || ||||||| | |||||||||||||||||||| ||||| |||||||| |||| |||    
T  3715440 gtgttgaaaattgactcaagaattggatgttgaagcactgaggaaacgtggcatgatttgcagggcaacgtggcacgattggttggttcagatttgtgtt 3715539  T
Q  388 tgtcactggaaaaatcgtggtacgatccaggaggaacgtg 427  Q
    |||| |||||||||| |||| |||||||||||||||||||    
T  3715540 tgtcgctggaaaaattgtggcacgatccaggaggaacgtg 3715579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 290 - 431
Target Start/End: Complemental strand, 47650216 - 47650074
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacg-tttgcagggcaacgtggcacaattggatggttcaggtttgggttt 388  Q
    |||||||||||||||||| || ||||||||||||||||||  |||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||    
T  47650216 tgttgaaaattgactcaaaaagtggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 47650117  T
Q  389 gtcactggaaaaatcgtggtacgatccaggaggaacgtggcac 431  Q
    |||  |||||||||  ||| |||||||||||||||||||||||    
T  47650116 gtcgttggaaaaattatggcacgatccaggaggaacgtggcac 47650074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 403 - 548
Target Start/End: Original strand, 3715597 - 3715740
Alignment:
Q  403 cgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtgg 502  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||| ||||    
T  3715597 cgtggcacgatccaggaggaacgtggcacaatgtag-cggataaggtatagtactgtactat-acctgctccatcgtggcacgattgggtcgaaacgtgg 3715694  T
Q  503 cacgatgctgcatattcttaaacactatttaaggcttctttcttca 548  Q
    |||||| |||| ||||  | ||||||||||||||||||||||||||    
T  3715695 cacgatactgcgtatttctgaacactatttaaggcttctttcttca 3715740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 551
Target Start/End: Complemental strand, 47650060 - 47649914
Alignment:
Q  403 cgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtgg 502  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||| |||  ||||||||| ||||||||| ||||    
T  47650060 cgtggcacgatccaggaggaacgtggcacgatgtag-cggataaggtataatactgtactat-acctgctgcattgtggcacgattgggtcgaaacgtgg 47649963  T
Q  503 cacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||||||||| ||||  | ||||||||||||||||| ||| |||||||    
T  47649962 cacgatgctgcgtatttctgaacactatttaaggcttattttttcattt 47649914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 330 - 435
Target Start/End: Complemental strand, 29196963 - 29196858
Alignment:
Q  330 aaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtggc 429  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||  ||| || ||| ||||||||||||||||| |||||||||||||||||||||    
T  29196963 aaaatcgtggcacgtttgcagggcaacgtggcacgattgaatggttcaatttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggc 29196864  T
Q  430 acgatg 435  Q
    ||||||    
T  29196863 acgatg 29196858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 416 - 551
Target Start/End: Complemental strand, 25796257 - 25796124
Alignment:
Q  416 aggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcat 515  Q
    ||||||||||||||| |||    ||| ||||||||||||||||||   |||||||||||| | ||| ||| ||||  || || |||||||||||||  ||    
T  25796257 aggaggaacgtggcaagattctaacgaataaggtatagtactgtacattcacctgctccaacgtggtacggtgggcacgtaacgtggcacgatgct--at 25796160  T
Q  516 attcttaaacactatttaaggcttctttcttcattt 551  Q
    |||| | |||||||||||||||||||||||||||||    
T  25796159 attcctgaacactatttaaggcttctttcttcattt 25796124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 435
Target Start/End: Original strand, 31314156 - 31314257
Alignment:
Q  329 aaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtgg 428  Q
    |||||||||||||||||||||||| || | | |||     |||||||||| ||| || | | ||||||||||||||||| |||||||| |||||||||||    
T  31314156 aaaaatcgtggcacgtttgcagggtaatgcgacac-----gatggttcagtttttgggtcgccactggaaaaatcgtggcacgatccaagaggaacgtgg 31314250  T
Q  429 cacgatg 435  Q
    |||||||    
T  31314251 cacgatg 31314257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 29196847 - 29196763
Alignment:
Q  404 gtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacct--gctccatcatggcacgat 487  Q
    |||| |||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||| ||||  |||||||| |||||||||    
T  29196847 gtggcacgatctaggaggaacgtggcacaatgtggacggataaggtatagtattgtactat-acctgcgctccatcgtggcacgat 29196763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 378
Target Start/End: Original strand, 24177031 - 24177078
Alignment:
Q  331 aaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcag 378  Q
    ||||||||||||||||||||||||||||||||| ||||| || |||||    
T  24177031 aaatcgtggcacgtttgcagggcaacgtggcacgattggttgtttcag 24177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 365 - 548
Target Start/End: Complemental strand, 46147852 - 46147669
Alignment:
Q  365 attggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattat 464  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||    
T  46147852 attgaatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcagacgaataaggtatagtactgtactat 46147753  T
Q  465 cacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttca 548  Q
    ||||||||||| | |||||||||||| || ||| ||||||||||||||| ||||| | |||||||||||||| ||| |||||||    
T  46147752 cacctgctccaacgtggcacgatgggctcaaaacgtggcacgatgctgcgtattcctgaacactatttaaggtttcattcttca 46147669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 332 - 551
Target Start/End: Complemental strand, 36463931 - 36463712
Alignment:
Q  332 aatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtggcac 431  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||| ||| || ||| || || ||||||||||| ||||| |||||||||||||||||    
T  36463931 aatcgtggcacgtttgcagggcaacgtgacacgattgaatggttcagtttttgggttgccattgaaaaaatcgtggcacgatgcaggaggaacgtggcac 36463832  T
Q  432 gatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatt 531  Q
    || | ||||| ||||||||||||| |||| |||||||||||||||| ||||| |||| | |||||| ||||||||||| ||| ||||| | |||| ||||    
T  36463831 gaagcagacgaataaggtatagtattgtactatcacctgctccatcgtggcatgatgagttcgaaacgtggcacgatgttgcgtattcctgaacattatt 36463732  T
Q  532 taaggcttctttcttcattt 551  Q
    ||||||||| ||||||||||    
T  36463731 taaggcttcattcttcattt 36463712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 290 - 435
Target Start/End: Complemental strand, 24334698 - 24334553
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttg 389  Q
    ||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||    
T  24334698 tgttgtaaattgcctcaagaatttgatgttgaagcactgagaaatcgtggcacgtttgcagggcaacgtgtcacgattggatggttcagatttggatttg 24334599  T
Q  390 tcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatg 435  Q
    ||  ||||||| | |||| ||||||||| |||||||||||||||||    
T  24334598 tcgttggaaaatttgtggcacgatccagaaggaacgtggcacgatg 24334553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 427 - 551
Target Start/End: Complemental strand, 52467789 - 52467665
Alignment:
Q  427 ggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaaca 526  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| | ||||    
T  52467789 ggcacgatgcagacagataaggtatagtactgtactatcacctgctccatcgtggcacgatgggctcgaaatgtggcacgatgctgcgtattcctgaaca 52467690  T
Q  527 ctatttaaggcttctttcttcattt 551  Q
    |||||||||||||| ||||||||||    
T  52467689 ctatttaaggcttcattcttcattt 52467665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 328 - 551
Target Start/End: Complemental strand, 45687729 - 45687507
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtg 427  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||||| ||| || ||| |||||||||| |||||| |||||||||||||||||||    
T  45687729 gaaaaatcgtggcacgtttgcagggcaacgtggtacgattgaatggttcagtttttgggttgccactggaaaagtcgtggcacgatccaggaggaacgtg 45687630  T
Q  428 gcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacac 527  Q
     ||||||| ||   |||||| || |||| |||| ||  |||  ||||||| ||  |||||||| |||||| ||||||| ||| ||| ||||  | |||||    
T  45687629 acacgatgcag-gagataagataaagtattgtactactaccaactccatcgtgctacgatgggctcgaaacgtggcacaatgttgcgtatttctgaacac 45687531  T
Q  528 tatttaaggcttctttcttcattt 551  Q
    ||||||||||||| ||||||||||    
T  45687530 tatttaaggcttcattcttcattt 45687507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 14490327 - 14490239
Alignment:
Q  16 acaatgaccaataataagaatagtaaatgtcagtttatcaggtttgcatttcttttccatatctacaacaattgcattatccttatcaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  14490327 acaatgaccaataataagaatagtaaatgtcagtttatcaggtttgcatttcttttccatatctacaacaattgcattagcctcatcaa 14490239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 331 - 549
Target Start/End: Original strand, 3793592 - 3793831
Alignment:
Q  331 aaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggt-ttgggtttgtcactggaaaaatcgtggtacgatccaggaggaac----- 424  Q
    |||||||||||||||||||||| ||| ||| || |||||||||||||| | |||||||| || ||||||||||||||| ||||||||||||||||         
T  3793592 aaatcgtggcacgtttgcagggaaacatggtacgattggatggttcagatattgggtttttcgctggaaaaatcgtggcacgatccaggaggaacatgga 3793691  T
Q  425 ----------------gtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgat 508  Q
                    |||||||||||| || ||||||||||||||| |||| ||| || ||||||||| ||| ||||| ||||||||| ||||||||||    
T  3793692 acgatggaagatgaacgtggcacgatgtggatggataaggtatagtattgtactat-acatgctccatcgtggtacgattgggtcgaaacgtggcacgat 3793790  T
Q  509 gctgcatattcttaaacactatttaaggcttctttcttcat 549  Q
    ||||| ||||  | |||||||||||||| ||||||||||||    
T  3793791 gctgcgtatttctgaacactatttaaggtttctttcttcat 3793831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 403 - 488
Target Start/End: Complemental strand, 24334543 - 24334460
Alignment:
Q  403 cgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatg 488  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| ||| |||||||||||| ||||||||||    
T  24334543 cgtggcacgatccaggaggaacgtggcacgatgtag-cggataaggtatagtaatgtactat-acctgctccatcgtggcacgatg 24334460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 404
Target Start/End: Complemental strand, 52467863 - 52467791
Alignment:
Q  332 aatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcg 404  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||| || ||| || || ||||||||    
T  52467863 aatcgtggcacgtttgcagggcaacgtggcacgattgaatggttcaggttttgggttgccattgaaaaaatcg 52467791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 14459082 - 14459156
Alignment:
Q  214 tgatgcaaatgcagtaaataagagcagtaaaagcacaaatgaatataaatgtctgtgtattattgagagtgaaaagtg 291  Q
    |||||||||||||||||||||||| | |    ||||||||||||||||||||| |||||||||||||| |||||||||    
T  14459082 tgatgcaaatgcagtaaataagaggaatg---gcacaaatgaatataaatgtcggtgtattattgagaatgaaaagtg 14459156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 3792486 - 3792523
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcact 327  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3792486 tgttgaaaattaactcaagaattggatgttgaagcact 3792523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 6e-63; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 289 - 431
Target Start/End: Original strand, 21800870 - 21801012
Alignment:
Q  289 gtgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggttt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  21800870 gtgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggtacgattggatggttcaggtttgggttt 21800969  T
Q  389 gtcactggaaaaatcgtggtacgatccaggaggaacgtggcac 431  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||    
T  21800970 gtcactggaaaaatcgtggcacgatccaagaggaacatggcac 21801012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 330 - 435
Target Start/End: Complemental strand, 3039467 - 3039361
Alignment:
Q  330 aaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcag-gtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtgg 428  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||| ||||||||||||||| |  |||||||||||||||||    
T  3039467 aaaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcagattttgggtttgtcgctggaaaaatcgtggcaaaatccaggaggaacgtgg 3039368  T
Q  429 cacgatg 435  Q
    |||||||    
T  3039367 cacgatg 3039361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 465 - 551
Target Start/End: Original strand, 21801010 - 21801096
Alignment:
Q  465 cacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||||||||||| |  |||| |||||||||||||||||||||||||   ||||| | |||||||||||||||||||||||||||||    
T  21801010 cacctgctccatcgtaccacgttggggtcgaaatgtggcacgatgctatgtattcctgaacactatttaaggcttctttcttcattt 21801096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 471 - 548
Target Start/End: Complemental strand, 3039305 - 3039228
Alignment:
Q  471 ctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttca 548  Q
    ||||||| ||||||||||||  ||||| ||||||||||||||| ||||| | |||||||||||||||||| |||||||    
T  3039305 ctccatcgtggcacgatgggcacgaaacgtggcacgatgctgcgtattcctgaacactatttaaggcttcattcttca 3039228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 551
Target Start/End: Complemental strand, 14522047 - 14522019
Alignment:
Q  523 aacactatttaaggcttctttcttcattt 551  Q
    |||||||||||||||||||||||||||||    
T  14522047 aacactatttaaggcttctttcttcattt 14522019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 290 - 549
Target Start/End: Original strand, 40816287 - 40816567
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgca-gggcaacgtggcacaattggatggttcaggtttgggttt 388  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| || |||||||||||||||||| |||||    
T  40816287 tgttgaaaattgactcaaaaattggatgttgaagcactgaaaaatcgtggcatgtttgcaggggcaacatggtacgattggatggttcaggttt-ggttt 40816385  T
Q  389 gtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtag---------------------acggataaggtatagtactgtattatcac 467  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||| ||                     || ||||||||||||||||||| | ||||    
T  40816386 gtcattggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggaggaacatgacacgattctaacagataaggtatagtactgtactgtcac 40816485  T
Q  468 ctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcat 549  Q
    |||||||| | ||||||||||||  || || ||||||||||||||| ||||| | | |||||||||||||||||||||||||    
T  40816486 ctgctccaacgtggcacgatgggcacgtaacgtggcacgatgctgcgtattcctgatcactatttaaggcttctttcttcat 40816567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 289 - 551
Target Start/End: Complemental strand, 19073508 - 19073273
Alignment:
Q  289 gtgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggttt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||      |||||||    
T  19073508 gtgttgaaaattgactcaagaattggatgttgaagcactgaaaaatggtggcacgtttgcaaggcaacgtggcacgattggatggtt------tgggttt 19073415  T
Q  389 gtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatg 488  Q
    |||| ||||||||||||                     |||||||||||||||| |||||||||||| |||| |||||||||||||||| |||||||||     
T  19073414 gtcattggaaaaatcgt---------------------ggcacgatgtagacgggtaaggtatagtattgtactatcacctgctccatcgtggcacgata 19073336  T
Q  489 gggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    |||| |||| ||||||||||| ||| ||||| | |||||||||||||||||||||||||||||    
T  19073335 gggttgaaacgtggcacgatgttgcgtattcctgaacactatttaaggcttctttcttcattt 19073273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 289 - 551
Target Start/End: Complemental strand, 19121398 - 19121163
Alignment:
Q  289 gtgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggttt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||      |||||||    
T  19121398 gtgttgaaaattgactcaagaattggatgttgaagcactgaaaaatggtggcacgtttgcaaggcaacgtggcacgattggatggtt------tgggttt 19121305  T
Q  389 gtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatg 488  Q
    |||| ||||||||||||                     |||||||||||||||| |||||||||||| |||| |||||||||||||||| |||||||||     
T  19121304 gtcattggaaaaatcgt---------------------ggcacgatgtagacgggtaaggtatagtattgtactatcacctgctccatcgtggcacgata 19121226  T
Q  489 gggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    |||| |||| ||||||||||| ||| ||||| | |||||||||||||||||||||||||||||    
T  19121225 gggttgaaacgtggcacgatgttgcgtattcctgaacactatttaaggcttctttcttcattt 19121163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 290 - 435
Target Start/End: Original strand, 47703387 - 47703532
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttg 389  Q
    ||||| ||||||||||||||||||||||| ||| |||||| ||||||| |||| |||||||||||||||||||| |||||||||||||  ||||||||||    
T  47703387 tgttgtaaattgactcaagaattggatgtcgaaacactgagaaatcgtagcacatttgcagggcaacgtggcacgattggatggttcaaatttgggtttg 47703486  T
Q  390 tcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatg 435  Q
    || |||||||| |||| | ||||||||| |||||||||||||||||    
T  47703487 tcgctggaaaattcgtagcacgatccagaaggaacgtggcacgatg 47703532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 409 - 549
Target Start/End: Original strand, 47703548 - 47703686
Alignment:
Q  409 acgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgat 508  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||    
T  47703548 acgatccaggaggaatgtggtacgatgtag-cggataaggtatagtactgtactat-acctgctccatcgtggcacgattgggtcaaaatgtggcacgat 47703645  T
Q  509 gctgcatattcttaaacactatttaaggcttctttcttcat 549  Q
    | ||| ||||  | |||||||||||||||||||||||||||    
T  47703646 gttgcgtatttctgaacactatttaaggcttctttcttcat 47703686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 290 - 434
Target Start/End: Complemental strand, 47256133 - 47255992
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttg 389  Q
    |||||||||||||||||| ||||| ||| |||||    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |||    
T  47256133 tgttgaaaattgactcaa-aattg-atggtgaagtctggaaaaatcgtggcacgtttgcagtgcaacgtggcacgattggatggttcaggtttgag-ttg 47256037  T
Q  390 tcactggaaaaatcgtggtacgatccaggaggaacgtggcacgat 434  Q
    |||||||||||||||||| |||||| |||||||  ||||||||||    
T  47256036 tcactggaaaaatcgtggcacgatctaggaggagtgtggcacgat 47255992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 329 - 435
Target Start/End: Complemental strand, 28266120 - 28266014
Alignment:
Q  329 aaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtgg 428  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||| || ||| ||||||||||||||||| |||||||| ||||||| |||    
T  28266120 aaaaatcatggcacgtttgcagggcaacgtggcacgattgaatggttcagattttgggttgccactggaaaaatcgtggcacgatccaagaggaacatgg 28266021  T
Q  429 cacgatg 435  Q
    |||||||    
T  28266020 cacgatg 28266014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 452
Target Start/End: Original strand, 17345045 - 17345205
Alignment:
Q  292 ttgaaaattgactcaagaattggatgttgaagca-ctgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgt 390  Q
    |||||||||||||||||||||| ||||||||||| | |||||||| |||||  |||| || | |||||||||| |||||||| ||||||||| || |||     
T  17345045 ttgaaaattgactcaagaattgaatgttgaagcaccggaaaaatcatggcaaatttgtagagtaacgtggcacgattggatgattcaggtttagg-ttgc 17345143  T
Q  391 cactggaaaaatcgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtata 452  Q
    |  |||||||||| ||||| ||| |||||||||  || ||||||  | || |||||||||||    
T  17345144 ccttggaaaaatcatggtaagatgcaggaggaatatgtcacgattcaaaccgataaggtata 17345205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 471 - 551
Target Start/End: Complemental strand, 50167579 - 50167499
Alignment:
Q  471 ctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||||| |||||||||||| |||||| ||||||||||||| | ||||| | |||||||||||||||||| ||||||||||    
T  50167579 ctccatcgtggcacgatgggctcgaaacgtggcacgatgcttcgtattcctgaacactatttaaggcttcattcttcattt 50167499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 471 - 551
Target Start/End: Complemental strand, 50169601 - 50169521
Alignment:
Q  471 ctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||||| |||||||||||| || ||| ||||||||||||||| ||||| | |||||||||||||||||| ||||||||||    
T  50169601 ctccatcgtggcacgatgggctcaaaacgtggcacgatgctgcgtattcctgaacactatttaaggcttcattcttcattt 50169521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 328 - 420
Target Start/End: Complemental strand, 50167701 - 50167608
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcag-gtttgggtttgtcactggaaaaatcgtggtacgatccaggag 420  Q
    |||||||||||||||||||||||||||||||| || ||||| ||| |||||  ||| || ||| ||||||||||||||||| ||||| ||||||    
T  50167701 gaaaaatcgtggcacgtttgcagggcaacgtgacataattgaatgattcagttttttgggttgccactggaaaaatcgtggcacgatgcaggag 50167608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 328 - 420
Target Start/End: Complemental strand, 50169723 - 50169630
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcag-gtttgggtttgtcactggaaaaatcgtggtacgatccaggag 420  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||||||  ||| || ||| ||||| ||||||||||| ||||| ||||||    
T  50169723 gaaaaatcgtggcacgtttgcagggcaacgtgacacgattgaatggttcagttttttgggttgccactgtaaaaatcgtggcacgatgcaggag 50169630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 776883 - 776988
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtg 427  Q
    |||||||||||||||||||| |||| ||| |||||| |||| ||||||||| ||| | || | || || ||||||||||| |||| ||||||||||||||    
T  776883 gaaaaatcgtggcacgtttgtagggaaac-tggcacgattgaatggttcagtttttgatt-gccattgaaaaaatcgtggcacgacccaggaggaacgtg 776980  T
Q  428 gcacgatg 435  Q
    ||||||||    
T  776981 gcacgatg 776988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 551
Target Start/End: Complemental strand, 28265958 - 28265877
Alignment:
Q  471 ctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatt-taaggcttctttcttcattt 551  Q
    ||||||| |||||||||||| || ||| ||||||||||||||| ||||| | ||||||||| ||||||||| ||||||||||    
T  28265958 ctccatcgtggcacgatgggctcaaaacgtggcacgatgctgcgtattcctgaacactattataaggcttcattcttcattt 28265877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 471 - 551
Target Start/End: Complemental strand, 45644746 - 45644666
Alignment:
Q  471 ctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||||| | |||||||||| |||||| ||||||||||| ||| ||||| | |||||||||||||||||  ||||||||||    
T  45644746 ctccatcgtagcacgatgggctcgaaacgtggcacgatgttgcgtattcctgaacactatttaaggctttattcttcattt 45644666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 535
Target Start/End: Complemental strand, 47255990 - 47255878
Alignment:
Q  415 caggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgca 514  Q
    ||||||||||||| ||||||  ||||||||||||| |||||        |||||||||||| | |||||||||||| |||||| |||||||||||||||     
T  47255990 caggaggaacgtgacacgattcagacggataaggtgtagta--------tcacctgctccaacgtggcacgatgggctcgaaacgtggcacgatgctgcg 47255899  T
Q  515 tattcttaaacactatttaag 535  Q
    | ||  | |||||||||||||    
T  47255898 tttttctgaacactatttaag 47255878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 411
Target Start/End: Complemental strand, 3580126 - 3580046
Alignment:
Q  332 aatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttg-ggtttgtcactggaaaaatcgtggtacg 411  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||| | || ||   |||| ||||||||||||||||||    
T  3580126 aatcgtggcacgattgcagggcaacgtgacacaattggatgtttcagttatgaggcaagtcattggaaaaatcgtggtacg 3580046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 45644862 - 45644827
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcac 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  45644862 gaaaaatcgtggcacgtttgcagggcaacgtggcac 45644827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 359
Target Start/End: Complemental strand, 8871630 - 8871599
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtg 359  Q
    ||||||||||||||||||||||||||||||||    
T  8871630 gaaaaatcgtggcacgtttgcagggcaacgtg 8871599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 292 - 435
Target Start/End: Complemental strand, 42270016 - 42269872
Alignment:
Q  292 ttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcagg-tttgggtttgt 390  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  42270016 ttgaaaattgactcaagaattggatgttgaagcactgagaaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgcgtttgt 42269917  T
Q  391 cactggaaaaatcgtggtacgatccaggaggaacgtggcacgatg 435  Q
    | ||||||||||||||| | |||||||||||||||||||| ||||    
T  42269916 cgctggaaaaatcgtggcaggatccaggaggaacgtggcatgatg 42269872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 290 - 435
Target Start/End: Complemental strand, 31056692 - 31056546
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcag-gtttgggttt 388  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||    
T  31056692 tgttgaaaattgactcaagaattggatgttgaagctctgtaaaatcgtggcacatttgcagggcaacgtggcacaattggatggttcagattttgggttt 31056593  T
Q  389 gtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatg 435  Q
    ||||||||||||||| ||| ||||||||| |||||| ||||||||||    
T  31056592 gtcactggaaaaatcatggcacgatccagaaggaacatggcacgatg 31056546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 409 - 551
Target Start/End: Original strand, 34681944 - 34682085
Alignment:
Q  409 acgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgat 508  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||  ||||||||||||||||||| ||||||||||    
T  34681944 acgatccaggaggaacgtggcacgatgtag-cggataaggtatagtattgtactatcacctgcttcattgtggcacgatggggtcgaaacgtggcacgat 34682042  T
Q  509 gctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||| ||||| | |||||||||||||||||||||||||||||    
T  34682043 gctgcgtattcctgaacactatttaaggcttctttcttcattt 34682085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 409 - 551
Target Start/End: Complemental strand, 42269856 - 42269714
Alignment:
Q  409 acgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgat 508  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||  ||||| ||||||||||    
T  42269856 acgatccaggaggaacgtggcacgatgtagacagataaggtatagtattgtactatcacctgctccatcgtggcacgatgggcacgaaacgtggcacgat 42269757  T
Q  509 gctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||    
T  42269756 gctgcgtattcctgaacactatttaaggcttctttctttattt 42269714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 414 - 550
Target Start/End: Complemental strand, 8040546 - 8040411
Alignment:
Q  414 ccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgc 513  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||     
T  8040546 ccaggaggaacgtgacacgatgtag-cggataaggtatagtactgtactatcacctgctccatcgtggcacgatggggtcgaaacgtggcacgatgctgt 8040448  T
Q  514 atattcttaaacactatttaaggcttctttcttcatt 550  Q
     ||||| | ||||||||||||||||| ||||||||||    
T  8040447 gtattcctgaacactatttaaggcttatttcttcatt 8040411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 328 - 488
Target Start/End: Complemental strand, 33162962 - 33162802
Alignment:
Q  328 gaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtg 427  Q
    |||||||||||||| ||||| |||| |||||||||| |||| ||||||||| ||| || ||| ||||||||||||||||| |||||||||||||||| ||    
T  33162962 gaaaaatcgtggcatgtttgtagggaaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacatg 33162863  T
Q  428 gcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatg 488  Q
    |||||||| ||||||||||||||||| | |||| ||||||| |||||||| ||||||||||    
T  33162862 gcacgatgcagacggataaggtatagcattgtactatcacccgctccatcgtggcacgatg 33162802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 331 - 435
Target Start/End: Original strand, 34681824 - 34681928
Alignment:
Q  331 aaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtggca 430  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  34681824 aaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccagtaggaacgtggca 34681923  T
Q  431 cgatg 435  Q
    |||||    
T  34681924 cgatg 34681928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 329 - 551
Target Start/End: Original strand, 36773185 - 36773406
Alignment:
Q  329 aaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtgg 428  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||| || ||| |||||||||||| |||| |||||||||||||||||||     
T  36773185 aaaaatcgtggcatgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaattgtggcacgatccaggaggaacgtga 36773284  T
Q  429 cacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtggcacgatgctgcatattcttaaacact 528  Q
    ||||||| ||   |||||| |  |||||| || |   |||  ||||||| |||||||||||| |||||| |||||||||||  || ||||| | ||||||    
T  36773285 cacgatgcag-gagataagatcaagtactttactgctaccaactccatcgtggcacgatgggctcgaaacgtggcacgatgtcgcgtattcctgaacact 36773383  T
Q  529 atttaaggcttctttcttcattt 551  Q
    ||||||| |||| ||||||||||    
T  36773384 atttaagacttcattcttcattt 36773406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 403 - 551
Target Start/End: Complemental strand, 31056536 - 31056388
Alignment:
Q  403 cgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtgg 502  Q
    ||||| |||||||||||||||| |||||||||| |||| ||||||||||| || |||| ||| |||||||||||| |||||||||||| ||| || ||||    
T  31056536 cgtggcacgatccaggaggaacatggcacgatgcagacagataaggtataatattgtactatgacctgctccatcgtggcacgatgggatcgtaacgtgg 31056437  T
Q  503 cacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||||| ||| ||||  | |||||||||||||||||||||||||||||    
T  31056436 cacgatgttgcgtatttctgaacactatttaaggcttctttcttcattt 31056388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 499 - 551
Target Start/End: Complemental strand, 33162812 - 33162760
Alignment:
Q  499 gtggcacgatgctgcatattcttaaacactatttaaggcttctttcttcattt 551  Q
    ||||||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  33162812 gtggcacgatgctgcatattcctgaacactatttaaggcttcattcttcattt 33162760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 427
Target Start/End: Original strand, 11066953 - 11067026
Alignment:
Q  354 aacgtggcacaattggatggttcaggtttgggtttgtcactggaaaaatcgtggtacgatccaggaggaacgtg 427  Q
    |||||||||| |||| | ||||||| ||| || ||| ||||| ||||||||||| |||||| ||||||||||||    
T  11066953 aacgtggcacgattgaagggttcagtttttgggttgccactgaaaaaatcgtggcacgatctaggaggaacgtg 11067026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 413
Target Start/End: Complemental strand, 6259322 - 6259239
Alignment:
Q  331 aaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttg-ggtttgtcactggaaaaatcgtggtacgat 413  Q
    ||||||||||||| | || | |||||||||||| |||||||| ||||| |||| ||   ||||||||||||||||||| |||||    
T  6259322 aaatcgtggcacgatggctgtgcaacgtggcactattggatgtttcagttttgaggaaagtcactggaaaaatcgtggcacgat 6259239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 290 - 435
Target Start/End: Original strand, 5405 - 5552
Alignment:
Q  290 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcag-gtttgggttt 388  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| ||| ||||||||||  |||||||||    
T  5405 tgttgaaaattgactcaagaattggatgttgaagcactgagaaatcatgacacgtttgcagggcaacgtggcacgattagatggttcagattttgggttt 5504  T
Q  389 gtcactggaaaaat-cgtggtacgatccaggaggaacgtggcacgatg 435  Q
    ||| |||||||||| ||||| ||||| ||| | |||||||||||||||    
T  5505 gtcgctggaaaaatacgtggcacgatgcagaaagaacgtggcacgatg 5552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 403 - 539
Target Start/End: Original strand, 5562 - 5698
Alignment:
Q  403 cgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtgg 502  Q
    ||||| ||||||||||||||| ||| ||| ||| |||||||||||||||| || |||| |||||||  ||||||| ||||||||||||  || || ||||    
T  5562 cgtggcacgatccaggaggaatgtgtcacaatgcagacggataaggtatattattgtactatcaccaactccatcgtggcacgatgggcacgtaacgtgg 5661  T
Q  503 cacgatgctgcatattcttaaacactatttaaggctt 539  Q
    ||||||||||| ||||  | |||||||||||||||||    
T  5662 cacgatgctgcgtatttctgaacactatttaaggctt 5698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 289 - 435
Target Start/End: Complemental strand, 11377 - 11231
Alignment:
Q  289 gtgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacgtttgcagggcaacgtggcacaattggatggttcaggtttgggttt 388  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||  ||| ||||    
T  11377 gtgttgaaaattgactcaagaattggatgttgaagcactgagaaatcgtggcacgtttgcagggcaacgtggcacgattagatggttcagaattgagttt 11278  T
Q  389 gtcactggaaaaatcgtggtacgatccaggaggaacgtggcacgatg 435  Q
    ||  || ||||| | |||| |||||  || |||||||||||||||||    
T  11277 gttgctcgaaaatttgtggcacgatttagaaggaacgtggcacgatg 11231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 403 - 549
Target Start/End: Complemental strand, 11221 - 11077
Alignment:
Q  403 cgtggtacgatccaggaggaacgtggcacgatgtagacggataaggtatagtactgtattatcacctgctccatcatggcacgatggggtcgaaatgtgg 502  Q
    ||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||| ||||||||| ||||||||| ||||    
T  11221 cgtggcacgatccaagagaaacgtggcacgatgtag-cggataaggtatagtactgtactat-acctactccatcgtggcacgattgggtcgaaacgtgg 11124  T
Q  503 cacgatgctgcatattcttaaacactatttaaggcttctttcttcat 549  Q
    ||||||||||| ||||  | ||||||||||||| |||||||||||||    
T  11123 cacgatgctgcgtatttctgaacactatttaagacttctttcttcat 11077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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