View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16817_low_10 (Length: 536)
Name: NF16817_low_10
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 8032866 - 8032570
Alignment:
| Q |
1 |
taagaaaataaaattgatagcattgtttcttagtttttgtctaaccatatttgcaacaatggtatagactgcgggattgaagtaagtgtaggagctccca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
8032866 |
taagaaaataaaattgatagcattgtttcttagtttttgtctaaccatattagcaacaatggtatagactggggaactgaagtaagtgtaggagctccca |
8032767 |
T |
|
| Q |
101 |
ctatcaaagataatttgaagacccttagcaggagtaggctttccattgaaaaacaaatctactggacctgtgttatagtgttttctgaaacaaacaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8032766 |
ctatcaaagataatttgaagacccttagcaggagtaggctttccattgaaaaacaaatctactggacctgtgttatagtgttttctgaaacaaacaaaaa |
8032667 |
T |
|
| Q |
201 |
tatatataaggttacgtgtaagttcttacaagttacgacattctttgtctcaaaatgaaagatccgtgtaaaatggccaaatatatatatttcattt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8032666 |
aatatataaggttacgtgtaagttcttacaagttacgacattctttgtctcaaaatgaaagatccgtgtaaaatggccaaatatatatatttcattt |
8032570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 281 - 518
Target Start/End: Complemental strand, 8022596 - 8022359
Alignment:
| Q |
281 |
atatatatatttcatttatacacatttcttaatccatgtaaaatggccgaatatatcacttattatggacaaagagagtaacatttagtccgacacttac |
380 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| ||||| | | |||||| |
|
|
| T |
8022596 |
atatatatatttcatttatacgcatttcttaatctgtgtaaaatggccgaatatatcacttattatggaaaaggagagtaacgtttaggtcaatacttac |
8022497 |
T |
|
| Q |
381 |
tctaatgaactttgaattataggtgtccaaacaattccagatgagggaatgaacttatctccaaggaataaatatcctcctccttctgcactaaggcagt |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022496 |
tctaatgaactttgaattataggtgtccaaaaaattccagatgagggaatgaacttatctccaaggaataaatatcctcctccttctgcactaaggcagt |
8022397 |
T |
|
| Q |
481 |
gacctaacacattgtcgataaagcccatagagtgaagt |
518 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8022396 |
gacctaacacattgtggataaagcccatagagtgaagt |
8022359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 324 - 512
Target Start/End: Complemental strand, 8032570 - 8032382
Alignment:
| Q |
324 |
tggccgaatatatcacttattatggacaaagagagtaacatttagtccgacacttactctaatgaactttgaattataggtgtccaaacaattccagatg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8032570 |
tggccgaatatatcacttattatggacaaagagagtaacatttagtccgacacttactctaatgaactttgaattataggtgtccaaacaattccagatg |
8032471 |
T |
|
| Q |
424 |
agggaatgaacttatctccaaggaataaatatcctcctccttctgcactaaggcagtgacctaacacattgtcgataaagcccatagag |
512 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
8032470 |
agggaacgaacttatctccaaggaataaatatcctcctccttctgcactaaggcagtgacctaacacattgtggataaagccaatagag |
8032382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 8022852 - 8022609
Alignment:
| Q |
5 |
aaaataaaattgatagcattgtttcttagttttt--gtctaaccatatttgcaacaatggtatagactgcgggattgaagtaagtgtaggagctcccact |
102 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
8022852 |
aaaatgaaattgatagcattgtttcttaatttttttgtctaaccatattagcaacaatggtatagactcggggactgaagtaagtgtaggagctcccact |
8022753 |
T |
|
| Q |
103 |
atcaaagataatttgaagacccttagcaggagtaggctttccattgaaaaacaaatctactggacctgtgttatagtgttttctgaaacaaacaaaaata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || | |
|
|
| T |
8022752 |
atcaaagataatttgaagacccttagcaggagtaggctttccattgaaaaacaaatctactggacctgtgctatagtgttttctgaaacaaa-aagaaaa |
8022654 |
T |
|
| Q |
203 |
tatataaggttacgtgtaagttcttacaagttacgacattctttg |
247 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
8022653 |
aatataagattacgtgtaagttcttataagtgacgacattctttg |
8022609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 10329369 - 10329445
Alignment:
| Q |
76 |
attgaagtaagtgtaggagctcccactatcaaagataatttgaagacccttagcaggagtaggctttccattgaaaa |
152 |
Q |
| |
|
||||||||| ||||| ||||| |||||||| || |||| | |||||||||| || |||||||||||||||||||| |
|
|
| T |
10329369 |
attgaagtatgtgtaagagcttccactatcgaaaataaggtcaagacccttaatagtagtaggctttccattgaaaa |
10329445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 464
Target Start/End: Original strand, 10329606 - 10329668
Alignment:
| Q |
402 |
ggtgtccaaacaattccagatgagggaatgaacttatctccaaggaataaatatcctcctcct |
464 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||||| || ||| ||||||||||| |
|
|
| T |
10329606 |
ggtgtccaaacaattcctgatgagggaatgagatcatctccaaaaaacaaaaatcctcctcct |
10329668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University