View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16817_low_13 (Length: 520)
Name: NF16817_low_13
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_13 |
 | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
|
| [»] scaffold0008 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 15 - 503
Target Start/End: Original strand, 37807590 - 37808075
Alignment:
| Q |
15 |
actaagaattggtaggagtaagacaagctattaccaaccagact--atagagaatatggtgagaaccccttattgtgacaaaaatggactaaggaaaggc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807590 |
actaagaattggtaggagtaagacaagctattaccaaccagactctatagagaatatggtgagaaccccttattgtgacaaaaatggactaaggaaaggc |
37807689 |
T |
|
| Q |
113 |
acatggacacccgaggaagacaaaaagttgattgcttatgtaactaggtatggctgttggaattggcgacaattacctaaatttgcaggtatagaaaagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807690 |
acatggacacccgaggaagacaaaaagttgattgcttatgtaactaggtatggctgttggaattggcgacaattacctaaatttgcaggtatagaaaagt |
37807789 |
T |
|
| Q |
213 |
tattacagttaatagtttatgtgtgttgtatttcttttagtttttgtgctatatatcttggaattcagtacttaatttgtttgcaggtcttgaaaggtgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807790 |
tattacagttaatagtttatgtgtgttgtatttcttttagtttttgtgctatatatcttggaattcagtacttaatttgtttgcaggtcttgaaaggtgt |
37807889 |
T |
|
| Q |
313 |
gggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtcatgaagaagaagagactatcatcaaacttcatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807890 |
gggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtcatgaagaagaagagactatcatcaaacttcatg |
37807989 |
T |
|
| Q |
413 |
aaaaattgggtaataggtacgtacgtatatatcaacacaataataatgatatttaagatatatcatacataaacctattaaatcactctat |
503 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
37807990 |
aaaaattgggtaataggtacgtacgtatgtatcaacacaataataatgatatttgtg-tatat----cataaacctattaaatcactctat |
37808075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 289 - 431
Target Start/End: Original strand, 37789204 - 37789346
Alignment:
| Q |
289 |
ttgtttgcaggtcttgaaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtcatgaagaag |
388 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| | ||| |||| | |
|
|
| T |
37789204 |
ttgttttcagggcttgaaaggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagatgtcaaaagagggaacttcaatcaacaagagg |
37789303 |
T |
|
| Q |
389 |
aagagactatcatcaaacttcatgaaaaattgggtaataggta |
431 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37789304 |
aagagcttatcatcaaacttcatgaaaaactgggtaataggta |
37789346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 37788683 - 37788817
Alignment:
| Q |
68 |
atggtgagaaccccttattgtgacaaaaatggactaaggaaaggcacatggacacccgaggaagacaaaaagttgattgcttatgtaactaggtatggct |
167 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| | || ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37788683 |
atggtgagaacccctt---gtgacaataatggattgagaaaaggttcatggacacatgaggaagacaaaaagttgattgcttatgttactaggtatggct |
37788779 |
T |
|
| Q |
168 |
gttggaattggcgacaattacctaaatttgcaggtata |
205 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
37788780 |
gttggaattggcgacaactacctagatttgcaggtata |
37788817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 389
Target Start/End: Original strand, 9870 - 9952
Alignment:
| Q |
307 |
aggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtcatgaagaaga |
389 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||| | ||||| ||| |||||||| |
|
|
| T |
9870 |
aggtgtgggaagagttgtagattgaggtggttgaattatctaaggcctaatatcaaaagaggaaactttactcaagaagaaga |
9952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 262106 - 262026
Alignment:
| Q |
296 |
caggtcttgaaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagcttta |
376 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||||| |||| ||||||||||| |||||| |||||||| ||||| |
|
|
| T |
262106 |
caggtctttcaaggtgtgggaagagttgtagattgaggtggctgaattatctaaggcctaatatcagaagagggaacttta |
262026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 237226 - 237133
Alignment:
| Q |
296 |
caggtcttgaaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtcatgaagaaga |
389 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||||| |||| ||| |||| || ||||||||||||| | ||| | ||| |||||||| |
|
|
| T |
237226 |
caggtctttcaaggtgtgggaagagttgtagattgaggtggctgaattatttaagacctaatatcaaaagaggaaacttcactcaagaagaaga |
237133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 41544258 - 41544340
Alignment:
| Q |
288 |
tttgtttgcaggtcttgaa-aggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagaggga |
370 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||| || ||||| |||||||||||||| || || ||||||| ||||||| |
|
|
| T |
41544258 |
tttgtttgcaggt-ttgaataggtgtggaaagagttgcaggctaagatggttgaactatcttagacccaatatcaagagaggga |
41544340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 34357708 - 34357760
Alignment:
| Q |
310 |
tgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaa |
362 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
34357708 |
tgtgggaagagttgtcgtctaagatggttgaactatttaaggcctaatatcaa |
34357760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 4610946 - 4610890
Alignment:
| Q |
307 |
aggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaa |
363 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||| ||||| |||||||| |||||| |
|
|
| T |
4610946 |
aggtgtgggaagagttgccgtctaaggtggctgaattatctgaggccagacatcaaa |
4610890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University