View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16817_low_14 (Length: 517)
Name: NF16817_low_14
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 505
Target Start/End: Original strand, 24429469 - 24429971
Alignment:
| Q |
20 |
agtggaagagagtgtgatgcagatggtagcaccccattattgcaaacccaatatgcagataattcatatcatgtcaaaagaactggtttgtactttttct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24429469 |
agtggaagagagtgtgatgcagatggtagcaccccattattgcaaacccaatatgcagataattcatatcatgtcaaaagaactggtttgtactttttct |
24429568 |
T |
|
| Q |
120 |
tctcaattcttatcaaataaaattatcatatat---------agttctgtttctgagtcatgtgcattttaatcaatacaagtttttattttcatattga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24429569 |
tctcaattcttatcaaataaaattatcatatatttattatatagttctgtttctgagtcatgtgcattttaatcaatacaactttttattttcatattga |
24429668 |
T |
|
| Q |
211 |
aaatttgaatcattgataaataaataagcatatgttgtttttgaatcttgacaatggtctttagtacatgtttggattgacgg--------acgtcaaaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
24429669 |
aaatttgaatcattgataaataaataagtatatgttgtttctgaatcttgacaatggtctttagtatatgtttggattgacggtaaatttgacatcaaaa |
24429768 |
T |
|
| Q |
303 |
ttacactttaaaactttaacaaaattacggtgatttgtttgtaacaggaacagtatggacagcagtggcacacatagtgacaggagtgataggatcagga |
402 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24429769 |
ttacactttaaagctttaacaaaattacggtgatttgtttgtaacaggaacagtatggacagcagtggcacacatagtgacaggagtaataggatcagga |
24429868 |
T |
|
| Q |
403 |
gtgttatcattagcatggagcattgcacaaattggatggattgcaggaccattagcaattattttatttgcttctgttactcttctctctgcttttcttc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24429869 |
gtgttatcattagcatggagcattgcacaaattggatggattgcaggaccattagcaattattttatttgcttctgttactcttctctctgcttttcttc |
24429968 |
T |
|
| Q |
503 |
tca |
505 |
Q |
| |
|
||| |
|
|
| T |
24429969 |
tca |
24429971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 356 - 455
Target Start/End: Original strand, 42369770 - 42369869
Alignment:
| Q |
356 |
tatggacagcagtggcacacatagtgacaggagtgataggatcaggagtgttatcattagcatggagcattgcacaaattggatggattgcaggaccatt |
455 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
42369770 |
tatggacagcagtagcacacatagtgacaggggtgataggatcaggagtgttatctttgccatggagcattgcacaacttggatggattgttggaccatt |
42369869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University