View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_15 (Length: 508)
Name: NF16817_low_15
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_15 |
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| [»] scaffold0086 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 410
Target Start/End: Original strand, 27945 - 28351
Alignment:
| Q |
12 |
aaaggtggaagctaaaaacctatgaagcacagactcagacatggacaggggacacgggtaatctagaaaaacgcaggacaca--------tatatatatt |
103 |
Q |
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| T |
27945 |
aaaggtggaagctaaaaacctatgaagcacagactcagacatggacaggggacacgggtaatctagaaaaacgcaggacacagacatggctatatatatt |
28044 |
T |
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| Q |
104 |
ttacactagagcagagtcgcattcgtgtccaaccaaatagannnnnnnngttggatacggctgaatccgcgtctgacgcgaatcgtaccagtgtcgcacg |
203 |
Q |
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| T |
28045 |
ttacactagagcagagtcgcattcgtgtccaaccaaatagattttttttgttggatacggctgaagccgcatctgacgcgaatcgtaccagtgtcgcacg |
28144 |
T |
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| Q |
204 |
cgcgtccgagttggaactgcgccggacacggtgacatgccagattcccaccacgtccatgcttcatagctaaaaactaaaaagggcatgggaaaatagaa |
303 |
Q |
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| T |
28145 |
cgcgtccgagtcggaactgcgccggacacggtgacacgccagattcccgccacgtccgtgcttcatagctaaaaactaaaaaggacataggaaaatagaa |
28244 |
T |
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| Q |
304 |
ttggaaatgtgctaagacgctaacagaatatgtaacagcgagaagtggagaccttaagcattgtcagcaagtccaatctcttggagtatctcccagctat |
403 |
Q |
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| T |
28245 |
ttggaaatgtactaagacgctgacagaatatgtaacaaacagaagtggagaccttaagcaatgtcagcaagtccaatctcttggagtatctcccagctat |
28344 |
T |
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| Q |
404 |
gtgtcat |
410 |
Q |
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|| |||| |
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| T |
28345 |
gtatcat |
28351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 60337 - 60404
Alignment:
| Q |
153 |
gttggatacggctgaatccgcgtctgacgcgaatcgtaccagtgtcgcacgcgcgtccgagttggaac |
220 |
Q |
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| T |
60337 |
gttggatacggctagatccgcgtctgacgcgaatcgtacgcgtgtcgtacgcgcgtccgtgtcggaac |
60404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 33211993 - 33211926
Alignment:
| Q |
153 |
gttggatacggctgaatccgcgtctgacgcgaatcgtaccagtgtcgcacgcgcgtccgagttggaac |
220 |
Q |
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| T |
33211993 |
gttggatacggctagatccacgtctgacgcgaatcgtacgcgtgtcgtacgcgcgtccgtgtcggaac |
33211926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 40174402 - 40174469
Alignment:
| Q |
153 |
gttggatacggctgaatccgcgtctgacgcgaatcgtaccagtgtcgcacgcgcgtccgagttggaac |
220 |
Q |
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| T |
40174402 |
gttggatacggcaatatccgcgtctgacgcgaatcgtacgtgtgtcgtacgcgcgtccgtgtcggaac |
40174469 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 28311 - 28368
Alignment:
| Q |
153 |
gttggatacggctgaatccgcgtctgacgcgaatcgtaccagtgtcgcacgcgcgtcc |
210 |
Q |
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| T |
28311 |
gttggatacggcaatatccgcgtctgacgcgaatcgtacgcgtgtcgtacgtgcgtcc |
28368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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