View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_16 (Length: 477)
Name: NF16817_low_16
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 33501635 - 33501175
Alignment:
| Q |
1 |
agtcaccgacagtgttctggttttaacggtaaagctttaactcgaaaaagctcatacatacccttaatttgataatatcctcaatttaagtcaacaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33501635 |
agtcaccgacagtgttctggttttaacggtaaagctttaactcgaaaaagctcatacatacccttaatttgataatatcctcaatttaagtcaacaccaa |
33501536 |
T |
|
| Q |
101 |
ggttttcagtcaccgcgatttatgatattgccgaaaattgttgttaaatattagcgattacagagcagttggaaacatatagaaccctgacgttgcgacc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33501535 |
ggttttcagtcaccacgatttatgatattgccgaaaattgttgttaaatattagcgattacagagcagttggaaacatatagaaccctgacgttgcgacc |
33501436 |
T |
|
| Q |
201 |
gcaattgtggtcacagaannnnnnnnnctttcgaacaccgacaaattagtgtttaatgtcatggtttgcctaaaaaagtgtctaggttaggatgtattat |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
33501435 |
gcaattgtggtcacagaatttttttt-ctttcgaacaccgacaaattagtgtttaatgttatggtttgcctaaaaaagtgtctagattaggatgtattat |
33501337 |
T |
|
| Q |
301 |
aattcgctgttcttttgcgaataagatacaatgccgtgtttggaattgcgacttgaccattggttgctgattttattgtacaggaattactaacgccact |
400 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33501336 |
aattcgctgttcttttgcgaataagataccatgccgtgtttggaattgcgacttgaccattggttgctgattttattgtacaggaactactaacgccact |
33501237 |
T |
|
| Q |
401 |
caaaaatgtggtcccttggttacaagaaatcttcaaatgggaaaaaccaatggttactattg |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33501236 |
caaaaatgtggtcccttggttacaagaaatcttcaaatgggaaaaaccaatggttactattg |
33501175 |
T |
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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 368 - 458
Target Start/End: Complemental strand, 55868115 - 55868026
Alignment:
| Q |
368 |
tgattttattgtacaggaattactaacgccactcaaaaatgtggtcccttggttacaagaaatcttcaaatgggaaaaaccaatggttact |
458 |
Q |
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||||||||||||| ||||| |||||| |||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||| |
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| T |
55868115 |
tgattttattgtataggaaatactaaagccacttaaaaatgtgg-cccttggttacaagaaatcttcacatgggaaagaccaatagttact |
55868026 |
T |
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