View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_17 (Length: 476)
Name: NF16817_low_17
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 10462755 - 10463214
Alignment:
| Q |
1 |
atgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataattaactcagatttggaaaaaatgtaggaagattgattgaattcaa |
100 |
Q |
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| T |
10462755 |
atgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataattaactcagatttggaaaaaatgtaggaagattgattgaattcaa |
10462854 |
T |
|
| Q |
101 |
tttataatgagcgcactagtaggacttaaacaagaaacttccatctcacagatggtatacagagaatttgtttagccacaatgttgaattagttattata |
200 |
Q |
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| T |
10462855 |
tttataatgagcgcactagtaggacttaaacaagaaacttccatctcacagatggtatacagagaatttgtttagccacaatgttgaattagttattata |
10462954 |
T |
|
| Q |
201 |
gcttgataaatttatttaagctacttcatcaaaaaacaagatataccgcaaattctattgccagcagaagattaagatgaagcatgtgactcacatgcac |
300 |
Q |
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| T |
10462955 |
gcttgataaatttatttaagctacttcatcaaaaaacaagatataccgcaaattctattgccagcagaagattaagatgaagcatgtgactcacatgcac |
10463054 |
T |
|
| Q |
301 |
agcacataaacaatgaaaacgtagtatttaaatccatagcatcaggacaatcgtttttattannnnnnnaacaattagtaagcaaaacaagacaatcatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10463055 |
agcacataaacaatgaaaacgtagtatttaaatccatagcatcaggacaatcgtttttattatttttttaacaattagtaagcaaaacaagacaatcatt |
10463154 |
T |
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| Q |
401 |
acttttagtttatactctttaaatcatctaaaagcaagatgcaaatgttcaacttgatcc |
460 |
Q |
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| T |
10463155 |
acttttagtttatactctttaaatcatctaaaagcaagatgcaaatgttcaacttgatcc |
10463214 |
T |
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