View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16817_low_18 (Length: 467)
Name: NF16817_low_18
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_18 |
 | |
|
| [»] scaffold0071 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0025 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Complemental strand, 20934742 - 20934302
Alignment:
| Q |
11 |
gatgacgttcatcgtgcatagttttgaaaaacaattaagccatcaatttttaagttaccatgtgataatataagcagacttgaatgtcaaggtagccaga |
110 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20934742 |
gatgaagttcattgtgcaaagttttgaaaaacaattaagccatcaatttttaagttaccatgtgataatataagcagacttgaatgtcaaggtagccaga |
20934643 |
T |
|
| Q |
111 |
acagaatcattttctatccacatgagaaggcaactaatgataagggtattatgggtaaacctcaaacatgaagtgtttctgaaaggaaggccaaaaagac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20934642 |
acagaatcattttctatccacatgagaaggcaactaatgataagggtattatgggtaaacctcaaacatgaagtgtttctgaaaggaaggctaaaaagac |
20934543 |
T |
|
| Q |
211 |
gagtgactatgattactagtgaggtgttttaagtaattagtaggtttaagtagattattagtaagtgactcattaggattaaataataagagttccatta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20934542 |
gagtgactatgattactagtgaggtgttttaagtaattagtaggtttaagtagattattagtaagtgactcattaggattaaataataagagttccatta |
20934443 |
T |
|
| Q |
311 |
gagttaaacactagaatgttctatttatctgtaaataaaggcgaattcttaggagtttagagtatgacggaataagttttctatttagggctatagtagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
20934442 |
gagttaaacactagaatgttctatttatctgtaaataaaggcgaattcttaggagtttagagtatgacagaataagttttctatttagggctatggtagg |
20934343 |
T |
|
| Q |
411 |
attcctatctgagttgtgtcggagctgggagtagttagaga |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20934342 |
attcctatctgagttgtgtcggagctgggagtagttagaga |
20934302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 164 - 436
Target Start/End: Complemental strand, 20933558 - 20933288
Alignment:
| Q |
164 |
ggtaaacctcaaacatgaagtgtttctgaaaggaaggccaaaaagacgagtgactatgattactagtgaggtgttttaagtaattagtaggtttaagtag |
263 |
Q |
| |
|
||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20933558 |
ggtaaacctcaaatatgaagcgtttatgaaaggaaggctaaaaagacgagtgactacgattactagtgaggtgttttaagtaattagtaggtttaagtag |
20933459 |
T |
|
| Q |
264 |
attattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaaggcgaattcttagg |
363 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||| |||| | ||||||||||||| ||||| ||||||||||| || |||||| | |
|
|
| T |
20933458 |
attattagtaagtgacttattaggattaaataataagaggcccattagggttatatactagaatgttctctttatttgtaaataaag--gagttcttatg |
20933361 |
T |
|
| Q |
364 |
agtttagagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
||||||||||||||| || | |||||||| || ||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
20933360 |
agtttagagtatgacagattgagttttctgttcagggctagagtaggattcctctctgagttgtgtcagagct |
20933288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 251 - 436
Target Start/End: Original strand, 30676352 - 30676544
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggat------taaataataagagttccattagagttaaacactagaatgttctatttatctgtaa |
344 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||| |||||| || |||||||||| ||||| |||| |
|
|
| T |
30676352 |
taggtttaagtagattattagtaagtggcctattaggatcagaattaaataataagaggcccattagggttaaatacaagaatgttctctttatttgtat |
30676451 |
T |
|
| Q |
345 |
ataaaggcgaattcttaggagttt-agagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
|||||| ||||||||| |||||| |||||| ||||||||||||||||| |||||||| | |||||||||||| ||||||||| ||||||||| |
|
|
| T |
30676452 |
gtaaaggggaattcttaagagttttagagtaggacggaataagttttctgtttagggccagagtaggattcctctctgagttgagtcggagct |
30676544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 436
Target Start/End: Complemental strand, 30676811 - 30676618
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggat------taaataataagagttccattagagttaaacactagaatgttctatttatctgtaa |
344 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||| |||||| ||||||||||||| ||||| |||| |
|
|
| T |
30676811 |
taggtttaagtagattattagtaagtggcctattaggatcagaattaaataataagaggcccattagggttaaatactagaatgttctctttatttgtat |
30676712 |
T |
|
| Q |
345 |
ataaaggcgaattctt-aggagttt-agagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
|||||| |||||||| | |||||| |||||| || |||||||||||||| |||||||| | |||||||||||| ||||||||| ||||||||| |
|
|
| T |
30676711 |
gtaaaggggaattctttaagagttttagagtaggatggaataagttttctgtttagggccagagtaggattcctctctgagttgagtcggagct |
30676618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 416
Target Start/End: Complemental strand, 26130725 - 26130593
Alignment:
| Q |
282 |
attaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaaggcgaattcttaggagtttagagtatgacgga |
381 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| | ||||||||||| ||||| |||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
26130725 |
attaggatttaataataagaggcccattagagttaaatattagaatgttctctttatttgtatataaagtggaatttttaggagtttagagtatgacgga |
26130626 |
T |
|
| Q |
382 |
ataagttttctatttagggctatagtaggattcct |
416 |
Q |
| |
|
| ||||| | |||||||| | |||||||||||| |
|
|
| T |
26130625 |
ttgagttt--tgtttagggccagagtaggattcct |
26130593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 18032032 - 18031943
Alignment:
| Q |
254 |
gtttaagtagattattagtaagtgactcattaggatta------aataataagagttccattagagttaaacactagaatgttctattta |
337 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||| |||||| ||||||||||||| |||| |
|
|
| T |
18032032 |
gtttaagtagattattagtaagtggcccattaggattaggattaaataataagaggcccattaaggttaaatactagaatgttctcttta |
18031943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 127 - 436
Target Start/End: Complemental strand, 22517715 - 22517393
Alignment:
| Q |
127 |
tccacatgagaaggcaactaatgataagggtattatgggtaaacctcaaacatgaagtgtttctgaaaggaaggccaaaaagacgagtgactatgattac |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||||| |||||||||||| || ||||| |||||||| | |||| |
|
|
| T |
22517715 |
tccacatgagaaggcaactaatgataagggtattataggcaaaccccaaatatgaagtgtttatgaaaggaaggctaagaagactagtgactaagtttac |
22517616 |
T |
|
| Q |
227 |
tagtgaggtgttttaagtaattagta------------ggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagt |
314 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||||||||||||| |||||| | |||||||||||||| ||||||| ||||||| || |
|
|
| T |
22517615 |
tagtgaggtattttaagtaatcagtaagcagttaattaggtttaagtagattattaataagtggcccattaggattaaatgataagaggcccattagggt |
22517516 |
T |
|
| Q |
315 |
taaacactagaatgttctatttatctgtaaataaaggcgaattcttaggag-tttagagtatgacggaataagttttctatttagggctatagtaggatt |
413 |
Q |
| |
|
|| | ||||||||||||| ||||| |||| ||||||| || |||||| ||| ||| ||||||||| || || |||||| |||||||| | ||||||||| |
|
|
| T |
22517515 |
tatatactagaatgttctctttatttgtatataaaggggagttcttatgagttttggagtatgacagattaggttttcggtttagggccagagtaggatt |
22517416 |
T |
|
| Q |
414 |
cctatctgagttgtgtcggagct |
436 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
22517415 |
cctctctgagttgtgtcggagct |
22517393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 251 - 436
Target Start/End: Complemental strand, 32632558 - 32632358
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgt-------- |
342 |
Q |
| |
|
|||||| || ||||||||||||||| ||||||||| |||||||||| |||| ||||||| |||||| ||||||||||||| ||||| ||| |
|
|
| T |
32632558 |
taggttaaaatagattattagtaagcgactcattatgattaaataactagaggcccattagggttaaatactagaatgttctctttatttgtgtgtgtat |
32632459 |
T |
|
| Q |
343 |
------aaataaaggcgaattcttaggagtt-tagagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagc |
435 |
Q |
| |
|
| |||||| |||| |||||||||| ||||||| ||||||||| |||||| |||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
32632458 |
atatatatgtaaaggagaatccttaggagttctagagtaggacggaatagattttctgtttagggccagagtaggattcctctctgagttgtgtcggagc |
32632359 |
T |
|
| Q |
436 |
t |
436 |
Q |
| |
|
| |
|
|
| T |
32632358 |
t |
32632358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 23500333 - 23500215
Alignment:
| Q |
251 |
taggtttaagtagattattagta---agtgactcattaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaata |
347 |
Q |
| |
|
|||||||||||||||||||| || |||| | |||||||||||||||||||||| ||||||||||||| || | |||||||| ||||| || | ||| |
|
|
| T |
23500333 |
taggtttaagtagattattattattaagtggcccattaggattaaataataagaggcccattagagttaa--accataatgttctctttatttgaatata |
23500236 |
T |
|
| Q |
348 |
aaggcgaattcttaggagttt |
368 |
Q |
| |
|
|||| |||||||| ||||||| |
|
|
| T |
23500235 |
aaggggaattcttgggagttt |
23500215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 20953437 - 20953496
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccatta |
310 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||| |||||||||||||||| ||||||| |
|
|
| T |
20953437 |
taggtttaattagattattagtaagtggcttgttaagattaaataataagaggtccatta |
20953496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 433
Target Start/End: Complemental strand, 56126319 - 56126200
Alignment:
| Q |
313 |
gttaaacactagaatgttctatttatctgtaaataaaggcgaattcttaggag-tttagagtatgacggaataagttttctatttagggctatagtagga |
411 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||| |||||| |||||| | || ||||||| || |||||||||| |||| |||||||||| ||||||| |
|
|
| T |
56126319 |
gttaaataatagaatgttctctttatttgtatttaaaggggaattcgtctaagttttagagcataacggaataag--ttctgtttagggctaaagtagga |
56126222 |
T |
|
| Q |
412 |
ttcctatctgagttgtgtcgga |
433 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
56126221 |
ttcctcactgagttgtgtcgga |
56126200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 37270447 - 37270371
Alignment:
| Q |
313 |
gttaaacactagaatgttctatttatctgtaaataaaggcgaattcttaggagtt-tagagtatgacggaataagttt |
389 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||| ||||||| |||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
37270447 |
gttaaataatagaatgttctctttatttgtatataaagggaaattcttatgagttgtag-gtatgacggaataagttt |
37270371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 251 - 436
Target Start/End: Original strand, 58100 - 58286
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaag |
350 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| | |||||| |||||| ||||| |||| |||||| |
|
|
| T |
58100 |
taggtttaagtagattattagtaagtggcccattaggattaaataataagaggcacattagagttacatactagattgttctctttatttgtatataaag |
58199 |
T |
|
| Q |
351 |
gcgaattcttaggag-tttagagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
| |||||||| |||| | ||||||||||| || ||| |||||| ||||| || |||||||||||||| |||||||| |||||||||| |
|
|
| T |
58200 |
gggaattcttgggagatctagagtatgacagactaaattttctgtttagcgccatagtaggattcctctctgagttatgtcggagct |
58286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 282 - 436
Target Start/End: Original strand, 33123028 - 33123182
Alignment:
| Q |
282 |
attaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaaggcgaattcttaggagtttagagtatgacgga |
381 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||| || |
|
|
| T |
33123028 |
attaggatttaataataagaggcccattagagttaaatactagaatgttctctttatttgtatataaaggggaattcttaggagtttagagtatgacaga |
33123127 |
T |
|
| Q |
382 |
ataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
| |||||||| || ||||| | |||||||||||| ||||||| ||||||||||| |
|
|
| T |
33123128 |
ttgagttttctgttcagggccagagtaggattcctctctgagtagtgtcggagct |
33123182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 251 - 434
Target Start/End: Complemental strand, 33524068 - 33523879
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggatta------aataataagagttccattagagttaaacactagaatgttctatttatctgtaa |
344 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
33524068 |
taggtttaagtagattattagtaagtggcccgttaggattaggatttaataataagaggcccattagagttaaatactagaatgttctctttatttgtat |
33523969 |
T |
|
| Q |
345 |
ataaaggcgaattcttaggagtttagagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggag |
434 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || | |||||| | |||||||| | |||||||||||| |||||||| | |||||| |
|
|
| T |
33523968 |
ataaaggggaattcttaggagtttagagtatgacagattgagttttttgtttagggccagagtaggattcctctctgagttatttcggag |
33523879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 251 - 436
Target Start/End: Complemental strand, 21212620 - 21212434
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaag |
350 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||||||||||||| ||||| || |||||||| |||| | ||||||||||| | ||||| |||| |||||| |
|
|
| T |
21212620 |
taggtttaagtagattattattaagtgtcccattaggattaaacaataaaagatccattagggttatatactagaatgttatctttatttgtatataaag |
21212521 |
T |
|
| Q |
351 |
gcgaattcttaggag-tttagagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
| | |||| | ||| ||||||||||||||||||||||||||| |||||||| | |||||||||||| ||| |||||| |||||||| |
|
|
| T |
21212520 |
gggcgttctcatgagttttagagtatgacggaataagttttctgtttagggccagagtaggattcctctctaagttgtatcggagct |
21212434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 436
Target Start/End: Original strand, 21000913 - 21001097
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaag |
350 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||||| |||||||||| || || |||| |||||| | ||||||||||| | |||||||| ||||| |
|
|
| T |
21000913 |
taggtttaagttgattatcagtaagtggttcattaggactaaataataaaaggcccgttagggttaaataatagaatgttctctctatctgtatgtaaag |
21001012 |
T |
|
| Q |
351 |
gcgaattcttaggagttt-agagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
| |||||||||||||||| |||| ||||| ||||||||||||| ||||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
21001013 |
gggaattcttaggagtttaagag-atgacagaataagttttct-gttagggccagagtaggattcctctctgagttgtgtcggagct |
21001097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 389
Target Start/End: Complemental strand, 23055839 - 23055701
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaag |
350 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||| |||| ||||||||| ||||||| |||||||| |||||| |||| ||||| |||| ||||| |
|
|
| T |
23055839 |
taggtttaagtagatcattagtaagtggcccattagggttaattaataagaggcccattagggttaaacaatagaatcttctctttatttgtatctaaag |
23055740 |
T |
|
| Q |
351 |
gcgaattcttaggagtttagagtatgacggaataagttt |
389 |
Q |
| |
|
| ||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
23055739 |
gagaattcttacgagtgatgagtatgatggaataagttt |
23055701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 389
Target Start/End: Original strand, 23055263 - 23055401
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaag |
350 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| | |||||||||||| || |||| |||||| | ||||||||||| ||||| |||| ||||| |
|
|
| T |
23055263 |
taggtttaagtagattattagtaagtgacccgctagggtaaaataataagagggccgttagggttaaataatagaatgttctctttatttgtatgtaaag |
23055362 |
T |
|
| Q |
351 |
gcgaattcttaggagtttagagtatgacggaataagttt |
389 |
Q |
| |
|
| ||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
23055363 |
gagaattcttacgagtgatgagtatgatggaataagttt |
23055401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 49348 - 49476
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaag |
350 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||| |||||||||| | || | || || ||||||||||||| ||||| |||| |||||| |
|
|
| T |
49348 |
taggtttaggtagattattagtaagtggcccattaggattagataataagaggcctgtttgggtcaacgactagaatgttctctttatttgtatataaag |
49447 |
T |
|
| Q |
351 |
gcgaattcttaggagtt-tagagtatgac |
378 |
Q |
| |
|
| |||||||| |||||| ||||||||||| |
|
|
| T |
49448 |
gggaattctttggagttctagagtatgac |
49476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 251 - 436
Target Start/End: Original strand, 16979211 - 16979400
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggatta------aataataagagttccattagagttaaacactagaatgttctatttatctgtaa |
344 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||| |||||| ||||||||||||| ||||| |||| |
|
|
| T |
16979211 |
taggtttaagtagattattagtaagtggcccattaggattatgatataataataagagactcattagggttaaatactagaatgttctctttatttgtat |
16979310 |
T |
|
| Q |
345 |
ataaaggcgaattcttaggagtttagagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
|||||| |||||||| |||||| ||| || ||||||||| ||||||| |||||||| | ||||||||||| |||||||| |||||||||| |
|
|
| T |
16979311 |
ataaagaggaattctttggagttcagaataggacggaataggttttctgtttagggccagagtaggattcc--tctgagttatgtcggagct |
16979400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 436
Target Start/End: Complemental strand, 22751892 - 22751709
Alignment:
| Q |
255 |
tttaagtagattattagtaagtgactcattaggattaaataataagagtt---ccattagagttaaacactagaatgttctat--ttatctgtaaata-- |
347 |
Q |
| |
|
|||||||||||| |||||||||| | ||||| ||||||||||||| | | ||||||| ||||| ||||||||||||| | ||||||||| ||| |
|
|
| T |
22751892 |
tttaagtagattcttagtaagtggcccattaagattaaataataataataggcccattaggattaaatactagaatgttctctctttatctgtatatata |
22751793 |
T |
|
| Q |
348 |
aaggcgaattcttaggagtttagagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
|||| |||||||| ||| |||||||| ||||||| ||||| |||||||| | |||| ||||||| ||||||||||||||||||| |
|
|
| T |
22751792 |
aaggggaattcttctgag-----agtatgacagaataagctttctgtttagggccaaagtaagattcctctctgagttgtgtcggagct |
22751709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 44333593 - 44333665
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacacta |
323 |
Q |
| |
|
|||| ||||||||| ||||| |||||| | |||||||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
44333593 |
taggattaagtagagtattactaagtggcccattaggattaaataataagaggtccattagggttaaatacta |
44333665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 22681265 - 22681320
Alignment:
| Q |
381 |
aataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
22681265 |
aataagttttctgtttagggccagagtaggattcctctctgagttgtgtcggagct |
22681320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 413
Target Start/End: Complemental strand, 31233843 - 31233673
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattag------gattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaa |
344 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||| | ||||||| || ||||| |||| |
|
|
| T |
31233843 |
taggtttaagtagattattagaaagtgatccattagctttaggattaaataataagaggctcattagagttaaatattagaatgctccctttatttgtat |
31233744 |
T |
|
| Q |
345 |
ata-aaggcgaattcttaggag-tttagagtatgacggaataagttttctatttagggctatagtaggatt |
413 |
Q |
| |
|
||| || | ||||| || |||| ||| ||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
31233743 |
atacaaagagaattttttggagttttggagtacaacggaataagttttctatttagggtcagagtaggatt |
31233673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 37805453 - 37805403
Alignment:
| Q |
252 |
aggtttaagtagattattagtaagtgactcattaggattaaataataagag |
302 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
37805453 |
aggtttgagtagattattagtaagtggctcatttggattaaataataagag |
37805403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 43791490 - 43791563
Alignment:
| Q |
128 |
ccacatgagaaggcaactaatgataagggtattatgggtaaacctcaaacatgaagtgtttctgaaaggaaggc |
201 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| ||||| ||| ||| || |||| |||||||||||| |
|
|
| T |
43791490 |
ccacatgagaatgcaactaatgataaggttattatgggaaaacccaaaatatggagggtttatgaaaggaaggc |
43791563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 9009201 - 9009126
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaa |
326 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| |||||||||| ||||| | ||||| |||||| ||||||| |
|
|
| T |
9009201 |
taggttgaagtagattattagtaagtgacccattcagattaaataaaaagaggtacattaaggttaaatactagaa |
9009126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 11972906 - 11972947
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaa |
292 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
11972906 |
taggtttaagtagattattagtaagtggcccattaggattaa |
11972947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 251 - 436
Target Start/End: Original strand, 19492160 - 19492352
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggatta------aataataagagttccattagagttaaacactagaatgttctatttatctgtaa |
344 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||| || ||| ||||||||||||| ||||| ||| |
|
|
| T |
19492160 |
taggtttaagtagattattagtaagttgctcattaggattaggattaaataataagaggcccaatagggtaaaatactagaatgttctctttatttgttt |
19492259 |
T |
|
| Q |
345 |
ataaaggcgaattcttaggagttt-agagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
|||||| ||||||| |||||||| ||| || |||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
19492260 |
ttaaaggggaattctcaggagttttagaatacaacggaacaagttttctgtttagggctagagtaggattcctctctgagttgtgtcggagct |
19492352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 36342615 - 36342545
Alignment:
| Q |
262 |
agattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttct |
332 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||||| || ||||| | |||||| | ||||||||||| |
|
|
| T |
36342615 |
agattattagtaagtggcccattagggttaaataataaaaggcccatttgggttaaataatagaatgttct |
36342545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 17981654 - 17981570
Alignment:
| Q |
282 |
attaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaaggcgaattcttaggagtt |
367 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| | |||| || ||||| ||||| |||| ||||||| || |||||| ||||| |
|
|
| T |
17981654 |
attaggattaaataataagaggcccattag-gttatatactataaagttctctttatttgtatataaaggggagttcttatgagtt |
17981570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 251 - 416
Target Start/End: Original strand, 17304896 - 17305067
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggatta------aataataagagttccattagagttaaacactagaatgttctatttatctgtaa |
344 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||| |||||| | ||||||||||| ||||| |||| |
|
|
| T |
17304896 |
taggtttaagtagattattagtaagtggctcgttaggattaggatttaataataagaggcccattagggttaaatattagaatgttctctttatttgtat |
17304995 |
T |
|
| Q |
345 |
ataaaggcgaattcttaggagtttagagtatgacggaataagttttctatttagggctatagtaggattcct |
416 |
Q |
| |
|
||||||| |||||||||| |||||| ||||||| ||||||||||||| |||||| | |||||||||||| |
|
|
| T |
17304996 |
ataaaggggaattcttagaagtttaaagtatgatagaataagttttctgtttaggatcagagtaggattcct |
17305067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 436
Target Start/End: Original strand, 19139264 - 19139465
Alignment:
| Q |
233 |
ggtgttttaagtaattagtaggt--ttaagtagattat--tagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatg |
328 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| || ||||||||| | ||| | |||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
19139264 |
ggtgttttaagtaattagtaggtcattaattaggtttaggtagtaagtggcccatcatgattaaataataagaggcccattagagttaaatactagaatg |
19139363 |
T |
|
| Q |
329 |
ttctatttatctgtaaataaaggcgaattcttaggag-tttagagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgt |
427 |
Q |
| |
|
||| ||||| || |||||| |||||||||||| |||||||| |||||||||| |||| | |||| ||||| ||||||||||| ||| |||||| |
|
|
| T |
19139364 |
atctctttatatg----taaagggaaattcttaggagttttagagttggacggaataacttttatgttta-ggctagagtaggattcc--tctcagttgt |
19139456 |
T |
|
| Q |
428 |
gtcggagct |
436 |
Q |
| |
|
||||||||| |
|
|
| T |
19139457 |
gtcggagct |
19139465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 17306177 - 17306246
Alignment:
| Q |
353 |
gaattcttaggagtttagagtatgacggaataagttttctatttagggctatagtaggattcctatctga |
422 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||||||| ||||| |
|
|
| T |
17306177 |
gaattcttaggagtttagagtatgacgaaataagttttctatttagggttagagtatgattcctctctga |
17306246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 401
Target Start/End: Original strand, 17304624 - 17304743
Alignment:
| Q |
282 |
attaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaaggcgaattcttaggagtttagagtatgacgga |
381 |
Q |
| |
|
||||||||| ||||||||||| ||||| | |||| ||||||||||| | || | ||| ||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
17304624 |
attaggatttaataataagaggctcattaaggataaatactagaatgttatcgtttttcgtatataaaggggaattcttaggagtttagagtatgacgaa |
17304723 |
T |
|
| Q |
382 |
ataagttttctatttagggc |
401 |
Q |
| |
|
||||||||| | |||||||| |
|
|
| T |
17304724 |
ataagttttttttttagggc |
17304743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 17304582 - 17304622
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggatta |
291 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
17304582 |
taggtttaagtagattattattaagtggctcattaggatta |
17304622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 436
Target Start/End: Original strand, 48294668 - 48294852
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttctatttatctgtaaataaag |
350 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||||||| | ||| ||||||| |||||| | ||| ||||||| ||||| |||| |||||| |
|
|
| T |
48294668 |
taggtttaagtagattattagtaagtgtcccattgggattaaatttt--gaggcccattagggttaaataatagtatgttctctttatttgtatataaag |
48294765 |
T |
|
| Q |
351 |
gcgaattcttaggagt-ttagagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
|||||||| ||| | |||||||| ||||||||||||||||| |||||| | | |||||||||||| | |||||| ||||||||| |
|
|
| T |
48294766 |
aggaattctttggaatattagagtaggacggaataagttttctgtttaggaccagagtaggattcctctttgagttacgtcggagct |
48294852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 436
Target Start/End: Complemental strand, 243151 - 242970
Alignment:
| Q |
251 |
taggtttaagtagattattagtaagtgactcattaggattaaataataagagttccattagagttaaacactagaatgttct----atttatctgtaaat |
346 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||| || ||||||||||||| |||||||||||| ||||||||| |||||| |||| || |
|
|
| T |
243151 |
taggtttaagcagatcattagtaagtgggccattatgactaaataataagaggcccattagagtta-------gaatgttctctttatttatttgtatat |
243059 |
T |
|
| Q |
347 |
aaaggcgaattcttaggagtt-tagagtatgacggaataagttttctatttagggctatagtaggattcctatctgagttgtgtcggagct |
436 |
Q |
| |
|
||||| | ||||||| ||||| ||||||||||||||||||||||||| |||||||| | | |||||||| || ||||||||||||||||| |
|
|
| T |
243058 |
aaaggagtattcttaagagttatagagtatgacggaataagttttctgtttagggccagattaggattctta--tgagttgtgtcggagct |
242970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 247393 - 247323
Alignment:
| Q |
322 |
tagaatgttctatttatctgtaaataaaggcgaattcttaggagtt-tagagtatgacggaataagttttc |
391 |
Q |
| |
|
||||||||||| ||||| |||| ||||||| ||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
247393 |
tagaatgttctctttatttgtatataaaggggaattcttaggagttctagagtatgaacgaagaagttttc |
247323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 26403 - 26455
Alignment:
| Q |
381 |
aataagttttctatttagggctatagtaggattcctatctgagttgtgtcggag |
434 |
Q |
| |
|
|||| ||||||| |||||| ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
26403 |
aatacgttttctgtttagg-ctagagtaggattcctctctgagttgtgtcggag |
26455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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