View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_19 (Length: 465)
Name: NF16817_low_19
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 10340002 - 10339552
Alignment:
| Q |
1 |
atccaaccatgtcataaagagttgatttcattcaaagagcttcattcatctaactagtattattcctcagatggaattagtacaaaaacgcttcaaattc |
100 |
Q |
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| T |
10340002 |
atccaaccatgtcataaagagttgatttcattcaaagagcttcattcatctaactagtattattcctcagatggaattagtacaaaaacgcttcaaattc |
10339903 |
T |
|
| Q |
101 |
tcatgctatatgtatatgagcttttcctttccacaatttagatttacctaaccctacgaagtgctaagtaagcaactaatctataaccaaacaacatcaa |
200 |
Q |
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| T |
10339902 |
tcatgctatatgtatatgagcttttcctttccacaatttagatttacctaaccctacgaagtgctaagtaagcaactaatctataaccaaacaacatcaa |
10339803 |
T |
|
| Q |
201 |
ggccatgatgaacacatcaacccacatatgattcaatcccattgatttaattggaggaaagtccataaccttgcacaactctccctttgaacattcatag |
300 |
Q |
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| T |
10339802 |
ggccatgatgaacacatcaacccacatatgattcaatcccattgatttaattggaggaaagtccataaccttgcacaactctccctttgaacattcatag |
10339703 |
T |
|
| Q |
301 |
taatcattttcattgtattgaacaccaagaagaagcttgtaacagtagtagctatagcttaagtacttaagccaaactatgaaaggtggaatctgttgta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10339702 |
taatcattttcattgtattgaacaccaagaagaagcttgtaacagtagtagctatagcttaagtacttaagccaaactatgaaaggtggaatctgttgta |
10339603 |
T |
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| Q |
401 |
tatagtatcctccagcaatgagaaaaacaagtgttgtcacagaagctagtg |
451 |
Q |
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| T |
10339602 |
tatagtatcctccagcaatgagaaaaacaagtgttgtcacagaagctagtg |
10339552 |
T |
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