View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_2 (Length: 805)

Name: NF16817_low_2
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_2
NF16817_low_2
[»] chr4 (1 HSPs)
chr4 (30-499)||(28885034-28885503)
[»] chr5 (3 HSPs)
chr5 (508-789)||(37184507-37184790)
chr5 (637-697)||(37889578-37889638)
chr5 (734-778)||(37889512-37889556)
[»] chr2 (3 HSPs)
chr2 (511-557)||(43150379-43150425)
chr2 (503-553)||(12542142-12542192)
chr2 (594-635)||(34236415-34236457)
[»] chr6 (1 HSPs)
chr6 (579-635)||(16266742-16266799)
[»] chr7 (6 HSPs)
chr7 (510-635)||(42951420-42951546)
chr7 (498-553)||(42951204-42951259)
chr7 (503-553)||(3292717-3292767)
chr7 (503-548)||(1382436-1382481)
chr7 (503-548)||(1388541-1388586)
chr7 (499-552)||(38974409-38974462)
[»] chr1 (2 HSPs)
chr1 (568-635)||(5108620-5108688)
chr1 (498-553)||(926702-926757)
[»] chr8 (1 HSPs)
chr8 (503-549)||(22570231-22570276)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 30 - 499
Target Start/End: Original strand, 28885034 - 28885503
Alignment:
Q  30 gtaatgaatcaattttgcaaagattaattccatttaaaatataactattcaaacgcgcaactaaacttacactgagaactacaagcatctgtattgtctt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28885034 gtaatgaatcaattttgcaaagattaattccatttaaaatataactattcaaacgcgcaactaaacttacactgagaactacaagtatctgtattgtctt 28885133  T
Q  130 aactcaaattatatgttgattgatacttgttttgaaagctgtagctatataattgtatttgctgtgttgtaagaaaagagataataggcgaaggtatatg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28885134 aactcaaattatatgttgattgatacttgttttgaaagctgtagctatataattgtatttgctgtgttgtaagaaaagagataataggcgaaggtatatg 28885233  T
Q  230 nnnnnnnaattgacagagtggaggaggataggggggtgtattgaccgctttcgccgcagccgttgagtggaccatagggaagctacacggtgaaggtgtc 329  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28885234 tttttttaattgacagagtggaggaggataggggggtgtattgaccgctttcgccgcagccgttgagtggaccatagggaagctacacggtgaaggtgtc 28885333  T
Q  330 cttcgaatcttcgattgttttagagtgtgtggagagcatttagcgtaaaacaaaaccaaagtcttggtacaagtgagggtacacaccatcaagatattat 429  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28885334 cttcgaatcttcgattgtttaaggttgtgtggagagcatttagcgtaaaacaaaaccaaagtcttggtacaagtgagggtacacaccatcaagatactat 28885433  T
Q  430 ccaataccaattaaactcaatattattatcatatacacatattttatattttgttacctaatttttaatt 499  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28885434 ccaataccaattaaactcaatattattatcttatacacatattttatattttgttacctaatttttaatt 28885503  T

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Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 508 - 789
Target Start/End: Complemental strand, 37184790 - 37184507
Alignment:
Q  508 tgcacttttggccccctaactttgcactagttgtgattttggcccctattnnnnnnnnnn---ccacatttcaaccccccaagtttcatcccttttgcaa 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||| ||||||||||||||||||||    
T  37184790 tgcacttttggccccctaactttgcactagttgtgattttggcccctattaaaaaaaaaaaagccacatttcaaccccctaagtttcatcccttttgcaa 37184691  T
Q  605 tttcaattttgttcattcaaaatcaaccattgaagctgttttgtttattttcatctatctaaagctaacagataagaaatgttataaaatgactaacacc 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37184690 tttcaattttgttcattcaaaatcaaccattgaagctgttttgtttattttcatctatctaaagctaacagataagaaatgttataaaatgac-aacacc 37184592  T
Q  705 ttatgggatatgaaaaatcaaagttgagtaaaaatggagaaaacgagagatgagaacaaattaccttgtataatgacgatgaact 789  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37184591 ttatgggatatgaaaaatgagagttgagtaaaaatggagaaaacgagagatgagaacaaattaccttgtatgatgacgatgaact 37184507  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 637 - 697
Target Start/End: Complemental strand, 37889638 - 37889578
Alignment:
Q  637 aagctgttttgtttattttcatctatctaaagctaacagataagaaatgttataaaatgac 697  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||| ||||| |||||||||||    
T  37889638 aagctcttttgtttattttcatctatctaaagctatcaggtaacaaatgatataaaatgac 37889578  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 734 - 778
Target Start/End: Complemental strand, 37889556 - 37889512
Alignment:
Q  734 aaaaatggagaaaacgagagatgagaacaaattaccttgtataat 778  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  37889556 aaaaatggagaaaacgagatatgaaaacaaattaccttgtataat 37889512  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 43150379 - 43150425
Alignment:
Q  511 acttttggccccctaactttgcactagttgtgattttggcccctatt 557  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||    
T  43150379 acttttggccccctaactttgcactagttgcgattttagcccctatt 43150425  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 553
Target Start/End: Original strand, 12542142 - 12542192
Alignment:
Q  503 ttaaatgcacttttggccccctaactttgcactagttgtgattttggcccc 553  Q
    |||| |||||||||||||||||| |||| ||  ||||||||||||||||||    
T  12542142 ttaattgcacttttggccccctatcttttcaaaagttgtgattttggcccc 12542192  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 34236415 - 34236457
Alignment:
Q  594 cccttttgcaa-tttcaattttgttcattcaaaatcaaccatt 635  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  34236415 cccttttgcaactttcaattttgatcattcaaaatcaaccatt 34236457  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 579 - 635
Target Start/End: Original strand, 16266742 - 16266799
Alignment:
Q  579 ccccccaagtttcatcccttttgcaa-tttcaattttgttcattcaaaatcaaccatt 635  Q
    ||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  16266742 ccccctaagtttcttcccttttgcaactttcaattttgatcattcaaaatcaaccatt 16266799  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 635
Target Start/End: Complemental strand, 42951546 - 42951420
Alignment:
Q  510 cacttttggccccctaactttgcactagttgtgattttg-gcccctattnnnnnnnnnnccacatttcaaccccccaagtttcatcccttttgcaa-ttt 607  Q
    ||||||||||||||||||||||||| ||||| |||||||  ||||||||           |||||  || ||||| |||||||  ||||||||||| |||    
T  42951546 cacttttggccccctaactttgcaccagttgcgattttgaccccctattaaaaaaaaaaacacatcccagccccctaagtttc-ccccttttgcaacttt 42951448  T
Q  608 caattttgttcattcaaaatcaaccatt 635  Q
    |||||||| |||||||||||||||||||    
T  42951447 caattttgatcattcaaaatcaaccatt 42951420  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 553
Target Start/End: Original strand, 42951204 - 42951259
Alignment:
Q  498 ttggtttaaatgcacttttggccccctaactttgcactagttgtgattttggcccc 553  Q
    |||| ||||| | |||||||||||||||| ||||||||||||| ||| ||||||||    
T  42951204 ttggcttaaacgtacttttggccccctaagtttgcactagttgcgatattggcccc 42951259  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 553
Target Start/End: Original strand, 3292717 - 3292767
Alignment:
Q  503 ttaaatgcacttttggccccctaactttgcactagttgtgattttggcccc 553  Q
    ||||| ||||||||||||||||||||||||  |||||| ||||||| ||||    
T  3292717 ttaaacgcacttttggccccctaactttgccatagttgcgattttgacccc 3292767  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 548
Target Start/End: Complemental strand, 1382481 - 1382436
Alignment:
Q  503 ttaaatgcacttttggccccctaactttgcactagttgtgattttg 548  Q
    |||||||| |||||| | |||||||||||||||||||| |||||||    
T  1382481 ttaaatgcgcttttgcctccctaactttgcactagttgcgattttg 1382436  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 548
Target Start/End: Complemental strand, 1388586 - 1388541
Alignment:
Q  503 ttaaatgcacttttggccccctaactttgcactagttgtgattttg 548  Q
    |||||||| |||||| | |||||||||||||||||||| |||||||    
T  1388586 ttaaatgcgcttttgcctccctaactttgcactagttgcgattttg 1388541  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 552
Target Start/End: Original strand, 38974409 - 38974462
Alignment:
Q  499 tggtttaaatgcacttttggccccctaactttgcactagttgtgattttggccc 552  Q
    |||||||| |||| ||||||||||||| |||| ||  |||||||||||||||||    
T  38974409 tggtttaattgcatttttggccccctatcttttcaaaagttgtgattttggccc 38974462  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 568 - 635
Target Start/End: Complemental strand, 5108688 - 5108620
Alignment:
Q  568 ccacatttcaaccccccaagtttcatcccttttgcaa-tttcaattttgttcattcaaaatcaaccatt 635  Q
    ||||||||||  |||| ||||||| | |||||||||| ||||||||||| ||||||| |||||||||||    
T  5108688 ccacatttcagtcccctaagtttccttccttttgcaactttcaattttgatcattcataatcaaccatt 5108620  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 553
Target Start/End: Complemental strand, 926757 - 926702
Alignment:
Q  498 ttggtttaaatgcacttttggccccctaactttgcactagttgtgattttggcccc 553  Q
    ||||||||||| || |||||||||| |||||||||| |||||| |||||| |||||    
T  926757 ttggtttaaatacatttttggccccttaactttgcattagttgcgatttttgcccc 926702  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 549
Target Start/End: Complemental strand, 22570276 - 22570231
Alignment:
Q  503 ttaaatgcacttttggccccctaactttgcactagttgtgattttgg 549  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  22570276 ttaaatgcacttttgacccc-taactttgcactagttgcgattttgg 22570231  T

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