View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_21 (Length: 453)

Name: NF16817_low_21
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_21
NF16817_low_21
[»] chr7 (18 HSPs)
chr7 (130-448)||(16796520-16796838)
chr7 (98-217)||(16794498-16794617)
chr7 (101-217)||(8194165-8194281)
chr7 (101-217)||(46791385-46791501)
chr7 (98-217)||(40445450-40445569)
chr7 (103-217)||(47867381-47867495)
chr7 (101-217)||(45172794-45172910)
chr7 (101-217)||(1297046-1297162)
chr7 (101-217)||(43379193-43379309)
chr7 (19-96)||(16799714-16799791)
chr7 (101-214)||(40793983-40794096)
chr7 (104-198)||(20908421-20908515)
chr7 (104-206)||(8400649-8400751)
chr7 (104-155)||(42500470-42500521)
chr7 (104-158)||(617693-617747)
chr7 (104-158)||(30787602-30787656)
chr7 (104-158)||(43623079-43623133)
chr7 (104-158)||(45764442-45764496)
[»] scaffold0438 (1 HSPs)
scaffold0438 (266-440)||(13562-13734)
[»] chr8 (21 HSPs)
chr8 (266-440)||(26296084-26296256)
chr8 (266-440)||(26309341-26309513)
chr8 (266-440)||(26343401-26343573)
chr8 (101-217)||(45116307-45116423)
chr8 (101-198)||(17340070-17340167)
chr8 (104-198)||(14401676-14401772)
chr8 (101-156)||(44320921-44320976)
chr8 (101-163)||(17316520-17316582)
chr8 (181-217)||(44320978-44321014)
chr8 (104-158)||(22580966-22581020)
chr8 (104-158)||(35965689-35965743)
chr8 (104-158)||(45455439-45455493)
chr8 (104-158)||(1115835-1115889)
chr8 (104-158)||(7341142-7341196)
chr8 (104-158)||(8422800-8422854)
chr8 (104-158)||(30304554-30304608)
chr8 (104-158)||(32377852-32377906)
chr8 (104-158)||(32431809-32431863)
chr8 (108-158)||(39751972-39752022)
chr8 (104-158)||(43370830-43370884)
chr8 (104-158)||(43689115-43689169)
[»] chr5 (20 HSPs)
chr5 (101-217)||(27013554-27013670)
chr5 (98-217)||(11819273-11819392)
chr5 (101-217)||(6552849-6552965)
chr5 (101-216)||(42343551-42343666)
chr5 (95-217)||(25052792-25052914)
chr5 (107-217)||(25048464-25048574)
chr5 (101-217)||(43295281-43295390)
chr5 (104-158)||(18537280-18537334)
chr5 (104-158)||(25896045-25896099)
chr5 (104-158)||(27866789-27866843)
chr5 (104-158)||(34078843-34078897)
chr5 (117-158)||(20286585-20286626)
chr5 (104-155)||(11032399-11032450)
chr5 (104-155)||(28885355-28885406)
chr5 (104-155)||(38859137-38859188)
chr5 (104-158)||(1035494-1035548)
chr5 (104-158)||(7020824-7020878)
chr5 (104-158)||(13567046-13567100)
chr5 (105-154)||(4202887-4202936)
chr5 (117-149)||(23028520-23028552)
[»] chr4 (15 HSPs)
chr4 (101-217)||(1590894-1591009)
chr4 (99-224)||(4617761-4617886)
chr4 (101-217)||(17916247-17916363)
chr4 (101-216)||(46517320-46517435)
chr4 (101-217)||(32716354-32716469)
chr4 (98-198)||(20971409-20971509)
chr4 (147-197)||(13897689-13897739)
chr4 (104-158)||(19072601-19072655)
chr4 (115-199)||(6182750-6182834)
chr4 (104-155)||(9891085-9891136)
chr4 (104-158)||(4769193-4769247)
chr4 (104-158)||(4976818-4976872)
chr4 (104-198)||(34745981-34746075)
chr4 (104-158)||(51643442-51643496)
chr4 (117-145)||(13900411-13900439)
[»] chr3 (28 HSPs)
chr3 (101-217)||(12491147-12491263)
chr3 (101-215)||(2284944-2285058)
chr3 (101-210)||(9556673-9556782)
chr3 (101-217)||(32426671-32426787)
chr3 (101-215)||(4510336-4510450)
chr3 (105-217)||(4120679-4120791)
chr3 (101-217)||(40468094-40468210)
chr3 (101-213)||(51548422-51548534)
chr3 (101-217)||(1275274-1275390)
chr3 (101-148)||(8263798-8263845)
chr3 (101-215)||(8117649-8117763)
chr3 (104-217)||(25059826-25059939)
chr3 (117-199)||(33399611-33399693)
chr3 (104-158)||(13746665-13746719)
chr3 (104-158)||(14399618-14399672)
chr3 (104-158)||(30946586-30946640)
chr3 (104-158)||(36816460-36816514)
chr3 (104-158)||(46992190-46992244)
chr3 (104-155)||(9428780-9428831)
chr3 (107-158)||(21955182-21955233)
chr3 (104-158)||(3949806-3949860)
chr3 (104-158)||(6504899-6504953)
chr3 (104-158)||(6741950-6742004)
chr3 (104-158)||(7841959-7842013)
chr3 (104-158)||(8159927-8159981)
chr3 (104-158)||(29930431-29930485)
chr3 (104-158)||(29979585-29979639)
chr3 (104-158)||(48249811-48249865)
[»] chr1 (23 HSPs)
chr1 (101-215)||(45472412-45472526)
chr1 (104-212)||(36360410-36360518)
chr1 (101-214)||(28862950-28863063)
chr1 (101-217)||(25593728-25593844)
chr1 (107-217)||(7403684-7403794)
chr1 (101-200)||(18887524-18887624)
chr1 (117-196)||(39914013-39914092)
chr1 (104-158)||(7980156-7980210)
chr1 (104-158)||(29355632-29355686)
chr1 (104-158)||(38691883-38691937)
chr1 (104-158)||(41454900-41454954)
chr1 (104-158)||(46974227-46974281)
chr1 (104-206)||(50116659-50116761)
chr1 (104-155)||(44620050-44620101)
chr1 (104-158)||(3947405-3947459)
chr1 (104-158)||(3984176-3984230)
chr1 (104-158)||(5078998-5079052)
chr1 (104-158)||(20350519-20350573)
chr1 (104-158)||(21943308-21943362)
chr1 (104-158)||(37015977-37016031)
chr1 (104-158)||(38775059-38775113)
chr1 (104-158)||(44466645-44466699)
chr1 (117-158)||(26466214-26466255)
[»] scaffold0325 (1 HSPs)
scaffold0325 (101-217)||(3896-4012)
[»] chr6 (14 HSPs)
chr6 (101-217)||(26684914-26685029)
chr6 (120-217)||(31859553-31859650)
chr6 (95-156)||(22864860-22864921)
chr6 (166-214)||(9095253-9095301)
chr6 (228-305)||(30728553-30728630)
chr6 (104-158)||(21358291-21358345)
chr6 (104-158)||(23962273-23962327)
chr6 (104-178)||(34111586-34111660)
chr6 (104-158)||(1611695-1611749)
chr6 (104-158)||(7362242-7362296)
chr6 (104-158)||(28250959-28251013)
chr6 (104-158)||(29287892-29287946)
chr6 (104-154)||(31147385-31147435)
chr6 (117-158)||(18607072-18607113)
[»] chr2 (21 HSPs)
chr2 (104-217)||(9639122-9639235)
chr2 (101-217)||(28423360-28423476)
chr2 (101-196)||(21535249-21535344)
chr2 (104-156)||(24750721-24750773)
chr2 (104-158)||(436374-436428)
chr2 (104-158)||(3802510-3802564)
chr2 (104-158)||(7264095-7264149)
chr2 (104-158)||(11692758-11692812)
chr2 (104-158)||(12907436-12907490)
chr2 (104-146)||(24683462-24683504)
chr2 (104-158)||(27275304-27275358)
chr2 (104-158)||(41007924-41007978)
chr2 (104-158)||(43949226-43949280)
chr2 (104-158)||(45476421-45476475)
chr2 (104-155)||(39795033-39795084)
chr2 (104-158)||(212385-212439)
chr2 (104-158)||(5348230-5348284)
chr2 (104-158)||(10623398-10623452)
chr2 (117-199)||(17997075-17997157)
chr2 (104-158)||(34920726-34920780)
chr2 (104-158)||(41561075-41561129)
[»] scaffold0341 (1 HSPs)
scaffold0341 (104-158)||(16301-16355)
[»] scaffold0116 (1 HSPs)
scaffold0116 (104-158)||(12325-12379)
[»] scaffold0494 (1 HSPs)
scaffold0494 (104-158)||(1944-1998)
[»] scaffold0101 (1 HSPs)
scaffold0101 (104-158)||(33872-33926)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 130 - 448
Target Start/End: Complemental strand, 16796838 - 16796520
Alignment:
Q  130 gacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaagaaaaggaaagagtccacaacaaacatgg 229  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  16796838 gacaagaagattgtacatgacttgaccaatagttcggtgaaaccaaaaaatattttgacaaatttgaagaagaaaaggaaagagtccatgacaaatatgg 16796739  T
Q  230 aaattgatcccctcctacttctttctctcatgcggtccctcctgcactattcttgtcccttcgattaatccaacggaagagaaataaaacggtaaaaata 329  Q
    |||| |||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  16796738 aaatggatcccgtcctgcttttttccctcatgcggtccctcctgcactattcttgtcccttcgattaatccaacggaagagaaataaaactctaaaaata 16796639  T
Q  330 atggcaaaacatgttaagagagagaaacttgtgagatttgttttcttcttcaccgtcctggtgctcagaacctatctgctctccactcttctttttcatc 429  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  16796638 atggcaaaacatgttaagagagagaaatatgtgagatttgttttcttcttcaccgtcctgctgctcataacctatctgctctccacttttctttttcatc 16796539  T
Q  430 tctaacatttcatctctct 448  Q
    ||||||||||||| |||||    
T  16796538 tctaacatttcatatctct 16796520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 16794617 - 16794498
Alignment:
Q  98 ggaaccttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaa 197  Q
    ||||||||||||||  || |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16794617 ggaaccttcttgccacaagattaatggaggacgacaagaagattgtacatgacttgaccaatagtttggtgaaaccaaaaaatattttgacaaatttgaa 16794518  T
Q  198 gaagaaaaggaaagagtcca 217  Q
    ||||||||||||||||||||    
T  16794517 gaagaaaaggaaagagtcca 16794498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 8194281 - 8194165
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  8194281 accttcttgcgggaagattaatggaggacgacaagaagattgtacatgacttgagcaatagttcggtgaaaccaaaaaatattttgacaaatttgaagaa 8194182  T
Q  201 gaaaaggaaagagtcca 217  Q
    ||||||  |||||||||    
T  8194181 gaaaagacaagagtcca 8194165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 46791385 - 46791501
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||  ||| ||||||||||||||||||||||| |||||||||||    
T  46791385 accttcttgccggaagattaatggaggacgacaagaagattgtacatgacttgaccgattctttggtgaaaccaaaaaatattttgactaatttgaagaa 46791484  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||||| ||||    
T  46791485 gaaaaggaaagaatcca 46791501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 40445569 - 40445450
Alignment:
Q  98 ggaaccttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaa 197  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||  ||  ||||||||||||||||||||||| ||||||||    
T  40445569 ggaaccttcttgccggaagattaatggaggacgacaagaagattgtacatgacttgacagattcttcggtgaaaccaaaaaatattttgactaatttgaa 40445470  T
Q  198 gaagaaaaggaaagagtcca 217  Q
    ||||||||||||||||||||    
T  40445469 gaagaaaaggaaagagtcca 40445450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 47867495 - 47867381
Alignment:
Q  103 cttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaaga 202  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||||||||    
T  47867495 cttcttgccggaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgactaatttgaagaaga 47867396  T
Q  203 aaaggaaagagtcca 217  Q
    |||||||||||||||    
T  47867395 aaaggaaagagtcca 47867381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 45172910 - 45172794
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||| |||||| ||||| |||||| ||||||||||||||||||||||||||| ||  ||  |||||||||||||||||||||||||||||||||||    
T  45172910 accttcttaccggaagattaacggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgacaaatttgaagaa 45172811  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||||||||||    
T  45172810 gaaaaggaaagagtcca 45172794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 1297046 - 1297162
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||| ||||| |||||    
T  1297046 accttcttgccggaagattaatggaggacgacgagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgactaatttaaagaa 1297145  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||||||||||    
T  1297146 gaaaaggaaagagtcca 1297162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 43379309 - 43379193
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||  ||| | ||||||||||||||||||||||||||| ||  ||  |||||||||||||||||||||||||||||||||||    
T  43379309 accttcttgccggaagattaacagagtacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgacaaatttgaagaa 43379210  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||||||||||    
T  43379209 gaaaaggaaagagtcca 43379193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 16799791 - 16799714
Alignment:
Q  19 attgttcatgtatggtgatttgtaggaagatgtatatatgcccataccacctgacatcactccttccaaatctaatca 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16799791 attgttcatgtatggtgatttgtaggaagatgtatatatgcccataccacttgacatcactccttccaaatctaatca 16799714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 40793983 - 40794096
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||||| |||| |||||||||||| |||||||||||||||||||||||| || ||  ||  ||||||||||||||||||||||| |||||||||||    
T  40793983 accttcttgcaggaaaattaatggaggacgacaagaagattgtacatgacttggccgattcttcggtgaaaccaaaaaatattttgactaatttgaagaa 40794082  T
Q  201 gaaaaggaaagagt 214  Q
    ||||||||||||||    
T  40794083 gaaaaggaaagagt 40794096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 20908515 - 20908421
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaag 198  Q
    ||||||| |||| ||||| ||||||||||||||||||||| | |||||| ||||| ||||| ||| ||| ||||||||||||||| |||||||||    
T  20908515 ttcttgcaggaagattaagggaggatgacaagaagattgtgcgtgactttaccaagagtttggtgcaacaaaaaaatattttgacgaatttgaag 20908421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 8400649 - 8400751
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaagaa 203  Q
    ||||||| || | ||||| ||||||||||||||||||||||  |||||||||||| ||     ||  ||||||||||||||||| |||||||||||| ||    
T  8400649 ttcttgctggtacattaaaggaggatgacaagaagattgtaggtgacttgaccaagagcaagatgttaccaaaaaatattttgataaatttgaagaacaa 8400748  T
Q  204 aag 206  Q
    |||    
T  8400749 aag 8400751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 42500470 - 42500521
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgac 155  Q
    |||||||||| | ||||| |||||| |||||||||||||||| |||||||||    
T  42500470 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 42500521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 617747 - 617693
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  617747 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 617693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 30787602 - 30787656
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  30787602 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 30787656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 43623133 - 43623079
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  43623133 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 43623079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 45764442 - 45764496
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  45764442 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 45764496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 266 - 440
Target Start/End: Original strand, 13562 - 13734
Alignment:
Q  266 ccctcctgcactattcttgtcccttcgattaatccaacggaagagaaataaaacggtaaaaataatggcaaaacatgttaagagagagaaacttgtgaga 365  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  13562 ccctcctgcactattcttgtccctttgattaatccaatgaaaga--aataaaacggtaaaaataaaggcaaaacatgttaagagagagaaacatgtgagt 13659  T
Q  366 tttgttttcttcttcaccgtcctggtgctcagaacctatctgctctccactcttctttttcatctctaacatttc 440  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13660 tttgttttcttcttcatcgtcctgctgctcagaacctatctgctctcccctcttctttttcatctctaacatttc 13734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 266 - 440
Target Start/End: Original strand, 26296084 - 26296256
Alignment:
Q  266 ccctcctgcactattcttgtcccttcgattaatccaacggaagagaaataaaacggtaaaaataatggcaaaacatgttaagagagagaaacttgtgaga 365  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  26296084 ccctcctgcactattcttgtccctttgattaatccaatgaaaga--aataaaacggtaaaaataaaggcaaaacatgttaagagagagaaacatgtgagt 26296181  T
Q  366 tttgttttcttcttcaccgtcctggtgctcagaacctatctgctctccactcttctttttcatctctaacatttc 440  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26296182 tttgttttcttcttcatcgtcctgctgctcagaacctatctgctctcccctcttctttttcatctctaacatttc 26296256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 266 - 440
Target Start/End: Original strand, 26309341 - 26309513
Alignment:
Q  266 ccctcctgcactattcttgtcccttcgattaatccaacggaagagaaataaaacggtaaaaataatggcaaaacatgttaagagagagaaacttgtgaga 365  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  26309341 ccctcctgcactattcttgtccctttgattaatccaatgaaaga--aataaaacggtaaaaataaaggcaaaacatgttaagagagagaaacatgtgagt 26309438  T
Q  366 tttgttttcttcttcaccgtcctggtgctcagaacctatctgctctccactcttctttttcatctctaacatttc 440  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26309439 tttgttttcttcttcatcgtcctgctgctcagaacctatctgctctcccctcttctttttcatctctaacatttc 26309513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 266 - 440
Target Start/End: Original strand, 26343401 - 26343573
Alignment:
Q  266 ccctcctgcactattcttgtcccttcgattaatccaacggaagagaaataaaacggtaaaaataatggcaaaacatgttaagagagagaaacttgtgaga 365  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  26343401 ccctcctgcactattcttgtccctttgattaatccaatgaaaga--aataaaacggtaaaaataaaggcaaaacatgttaagagagagaaacatgtgagt 26343498  T
Q  366 tttgttttcttcttcaccgtcctggtgctcagaacctatctgctctccactcttctttttcatctctaacatttc 440  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26343499 tttgttttcttcttcatcgtcctgctgctcagaacctatctgctctcccctcttctttttcatctctaacatttc 26343573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 45116307 - 45116423
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||  ||  ||||||||||||| |||||||||||||||||||||    
T  45116307 accttctttccggaagattaatggaggatgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaagtattttgacaaatttgaagaa 45116406  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||| ||||||||||    
T  45116407 gaaaagaaaagagtcca 45116423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 17340070 - 17340167
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaag 198  Q
    ||||||||||  ||| |||||||||||| ||||||||||||||||||||||||||||| ||||| || ||  |||| |||||||||| ||||||||||    
T  17340070 accttcttgcaagaagattaatggaggacgacaagaagattgtacatgacttgaccaaaagtttggtaaagtcaaataatattttgagaaatttgaag 17340167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 14401772 - 14401676
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacat--gacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaag 198  Q
    ||||||| |||| ||||| ||| |||||||||||||||||||||  ||||||||||| ||||| |||  |||||||||||||||||  |||||||||    
T  14401772 ttcttgcaggaagattaagggatgatgacaagaagattgtacatatgacttgaccaagagtttggtgccaccaaaaaatattttgatgaatttgaag 14401676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 44320921 - 44320976
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgacc 156  Q
    ||||||||||||||| || || |||||| |||||||||||||||||||||||||||    
T  44320921 accttcttgccggaagataaacggaggacgacaagaagattgtacatgacttgacc 44320976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 17316520 - 17316582
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagtt 163  Q
    ||||||||||  ||| |||||||||||| |||||||||||||||| |||||||||||| ||||    
T  17316520 accttcttgcaagaagattaatggaggacgacaagaagattgtacgtgacttgaccaaaagtt 17316582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 44320978 - 44321014
Alignment:
Q  181 attttgacaaatttgaagaagaaaaggaaagagtcca 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  44320978 attttgacaaatttgaagaagaaaaggaaagagtcca 44321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 22580966 - 22581020
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  22580966 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 22581020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 35965743 - 35965689
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  35965743 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 35965689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 45455439 - 45455493
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  45455439 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 45455493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 1115835 - 1115889
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  1115835 ttcttgccggtagattaaaggaggacgacaagaagatagtacgtgacttgaccaa 1115889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 7341142 - 7341196
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  7341142 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 7341196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 8422854 - 8422800
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  8422854 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 8422800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 30304608 - 30304554
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  30304608 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 30304554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 32377906 - 32377852
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  32377906 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 32377852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 32431863 - 32431809
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  32431863 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 32431809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 39752022 - 39751972
Alignment:
Q  108 tgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  39752022 tgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 39751972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 43370830 - 43370884
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | | ||| |||||| |||||||||||||||| ||||||||||||    
T  43370830 ttcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaa 43370884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 43689169 - 43689115
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | |||||  ||||| |||||||||||||||| ||||||||||||    
T  43689169 ttcttgccggtagattaaaagaggacgacaagaagattgtacgtgacttgaccaa 43689115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 27013670 - 27013554
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||||||| || |||||||||||| ||||||||||||||||||||||||||| ||  ||  |||||||||||||||||||||||||||||||||||    
T  27013670 accttcttgccgaaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgacaaatttgaagaa 27013571  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||||||||||    
T  27013570 gaaaaggaaagagtcca 27013554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 11819273 - 11819392
Alignment:
Q  98 ggaaccttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaa 197  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| | ||  ||  |||||||||||||||||||| |||||||||||    
T  11819273 ggaaccttcttgccggaagattaatggaggacgacaagaagattgtacatgacttgatcgatttttcagtgaaaccaaaaaatattttcacaaatttgaa 11819372  T
Q  198 gaagaaaaggaaagagtcca 217  Q
    ||||||||||||||||||||    
T  11819373 gaagaaaaggaaagagtcca 11819392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 6552849 - 6552965
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||  ||  |||||| |||||||||||||||| |||||||||||    
T  6552849 accttcttgccggaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaatcaaaaaatattttgactaatttgaagaa 6552948  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||||||||||    
T  6552949 gaaaaggaaagagtcca 6552965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 42343551 - 42343666
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||  ||   |||||||||||||||||||||| |||||||||||    
T  42343551 accttcttgccggaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcgatgaaaccaaaaaatattttgactaatttgaagaa 42343650  T
Q  201 gaaaaggaaagagtcc 216  Q
    ||||||||||||||||    
T  42343651 gaaaaggaaagagtcc 42343666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 25052792 - 25052914
Alignment:
Q  95 caaggaaccttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaattt 194  Q
    ||||| |||||||||  |||| |||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||||||| ||| ||    
T  25052792 caaggcaccttcttgagggaagattaatggaggacgacaagaagattatacacgacttgatcaatagtttggtgaaaccaaaaaatattttgaaaaaatt 25052891  T
Q  195 gaagaagaaaaggaaagagtcca 217  Q
    || ||||||||||||||||||||    
T  25052892 gatgaagaaaaggaaagagtcca 25052914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 25048464 - 25048574
Alignment:
Q  107 ttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaagaaaag 206  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||   |||||||| |||||||||||| ||||||||||||||||||    
T  25048464 ttgccggaagattaatggaggacgacaagaagattgtatatgacttgaccaatagttcgttgaaaccataaaatattttgataaatttgaagaagaaaag 25048563  T
Q  207 gaaagagtcca 217  Q
    | || ||||||    
T  25048564 gcaatagtcca 25048574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 43295281 - 43295390
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||| |||||| ||  ||  |||       ||| ||||||||| |||||||||||    
T  43295281 accttcttgccggaagattaatggaggacgacaagaagattgtacatgatttgaccgattcttcggtg-------aaattattttgactaatttgaagaa 43295373  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||| ||||||||||||    
T  43295374 gaaagggaaagagtcca 43295390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 18537334 - 18537280
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  18537334 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 18537280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 25896099 - 25896045
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  25896099 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 25896045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 27866843 - 27866789
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  27866843 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 27866789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 34078843 - 34078897
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  34078843 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 34078897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 20286585 - 20286626
Alignment:
Q  117 attaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  20286585 attaaaggaggatgacaaaaagattgtacatgacttgaccaa 20286626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 11032450 - 11032399
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgac 155  Q
    |||||||||| | ||||| |||||| |||||||||||||||| |||||||||    
T  11032450 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 11032399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 28885406 - 28885355
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgac 155  Q
    |||||||||| | ||||| |||||| |||||||||||||||| |||||||||    
T  28885406 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 28885355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 38859188 - 38859137
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgac 155  Q
    |||||||||| | ||||| |||||| |||||||||||||||| |||||||||    
T  38859188 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 38859137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 1035548 - 1035494
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||| ||||||| ||||||||||||    
T  1035548 ttcttgccggtagattaaaggaggacgacaagaatattgtacgtgacttgaccaa 1035494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 7020878 - 7020824
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||  ||||||||||||    
T  7020878 ttcttgccggtagattaaaggaggacgacaagaagattgtatgtgacttgaccaa 7020824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 13567100 - 13567046
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| | |||| |||||||||||||||| ||||||||||||    
T  13567100 ttcttgccggtagattaaagaaggacgacaagaagattgtacgtgacttgaccaa 13567046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 4202936 - 4202887
Alignment:
Q  105 tcttgccggaatattaatggaggatgacaagaagattgtacatgacttga 154  Q
    ||||||||| | ||||| |||||| |||||||||||||||| ||||||||    
T  4202936 tcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttga 4202887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 23028552 - 23028520
Alignment:
Q  117 attaatggaggatgacaagaagattgtacatga 149  Q
    ||||| |||||||||||||||||||||||||||    
T  23028552 attaagggaggatgacaagaagattgtacatga 23028520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 1590894 - 1591009
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||    
T  1590894 accttcttgccggaagattaatggaggacgaca-gaagattgtacatgacttgaccaattcttcggtgaaaccaaaaaatattttgacaaatttgaagaa 1590992  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||||||||||    
T  1590993 gaaaaggaaagagtcca 1591009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 4617761 - 4617886
Alignment:
Q  99 gaaccttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaag 198  Q
    |||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||| ||   |  |||||||||||||||||||||||||||||||||    
T  4617761 gaaccttcttgctggaagattaacggaggacgacaagaagattgtacatgacttgaccgattcatcggtgaaaccaaaaaatattttgacaaatttgaag 4617860  T
Q  199 aagaaaaggaaagagtccacaacaaa 224  Q
    ||||||||||||||||||| ||||||    
T  4617861 aagaaaaggaaagagtccataacaaa 4617886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 17916247 - 17916363
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||  |||||||||||    
T  17916247 accttcttgccggaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgattaatttgaagaa 17916346  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||||||||||    
T  17916347 gaaaaggaaagagtcca 17916363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 46517435 - 46517320
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||  ||| |||||||||||| ||||||||||||||||||||||||||| ||  ||  | ||||||||||||||||||||| |||||||||||    
T  46517435 accttcttgctagaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggcgaaaccaaaaaatattttgactaatttgaagaa 46517336  T
Q  201 gaaaaggaaagagtcc 216  Q
    ||||| ||||||||||    
T  46517335 gaaaatgaaagagtcc 46517320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 32716354 - 32716469
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||| || |||||| |||||||||||| ||||| ||||||||||||||||||||| ||  ||| |||||||||||||||| |||||| |||||||||||    
T  32716354 accttattaccggaagattaatggaggacgacaaaaagattgtacatgacttgaccgattctttggtgaaaccaaaaaata-tttgactaatttgaagaa 32716452  T
Q  201 gaaaaggaaagagtcca 217  Q
    ||||| |||||||||||    
T  32716453 gaaaaagaaagagtcca 32716469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 20971509 - 20971409
Alignment:
Q  98 ggaaccttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaa 197  Q
    ||||||||||| | |||| |||||||||| | |||||| ||||||||| ||||||||| || ||||  || ||| | |||||||||||||||||||||||    
T  20971509 ggaaccttcttacgggaagattaatggagaacgacaaggagattgtacgtgacttgactaagagttcagtaaaatcgaaaaatattttgacaaatttgaa 20971410  T
Q  198 g 198  Q
    |    
T  20971409 g 20971409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 13897739 - 13897689
Alignment:
Q  147 tgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaa 197  Q
    |||||||||||| ||||| || || ||||||||||||||||||||||||||    
T  13897739 tgacttgaccaagagtttagtaaacccaaaaaatattttgacaaatttgaa 13897689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 19072655 - 19072601
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  19072655 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 19072601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 6182750 - 6182834
Alignment:
Q  115 atattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaaga 199  Q
    ||||||| ||| | ||||||||| |||||||||||||||||||| ||||| |||    ||||||||||||||  |||||| ||||    
T  6182750 atattaagggatggtgacaagaaaattgtacatgacttgaccaagagtttggtgctttcaaaaaatattttgttaaattttaaga 6182834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 9891085 - 9891136
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgac 155  Q
    |||||||||| | ||||| |||||| |||||||||||||||| |||||||||    
T  9891085 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 9891136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 4769193 - 4769247
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    ||||| |||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  4769193 ttcttaccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 4769247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 4976818 - 4976872
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | | ||| |||||| |||||||||||||||| ||||||||||||    
T  4976818 ttcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaa 4976872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 34746075 - 34745981
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaag 198  Q
    ||||||| | || ||||||||| ||||| ||||||||||| | |||||||||||| ||||  ||| ||  || ||||| |||||| |||||||||    
T  34746075 ttcttgcggaaagattaatggatgatgataagaagattgtgcgtgacttgaccaagagttcagtgcaaaaaataaatactttgacgaatttgaag 34745981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 51643496 - 51643442
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||| | | ||||| |||||| |||||||||||||||| ||||||||||||    
T  51643496 ttcttgccagtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 51643442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 13900439 - 13900411
Alignment:
Q  117 attaatggaggatgacaagaagattgtac 145  Q
    |||||||||||||||||||||||||||||    
T  13900439 attaatggaggatgacaagaagattgtac 13900411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 12491147 - 12491263
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||  ||  ||||||||||||||||||||||| |||||||||||    
T  12491147 accttcttgccggaagattaatggaggacgacaagaagattgtacacgacttgaccaattcttcggtgaaaccaaaaaatattttgactaatttgaagaa 12491246  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||||||||||    
T  12491247 gaaaaggaaagagtcca 12491263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 2285058 - 2284944
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||||||    
T  2285058 accttcttgccggaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgactaatttgaagaa 2284959  T
Q  201 gaaaaggaaagagtc 215  Q
    |||||||||||||||    
T  2284958 gaaaaggaaagagtc 2284944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 9556782 - 9556673
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||    
T  9556782 accttcttgccggaagattaatggagggcgacaagaagattgtacatgacttgaccgatagttcaatgaaaccaaaaaatattttgacaaatttgaagaa 9556683  T
Q  201 gaaaaggaaa 210  Q
    ||||||||||    
T  9556682 gaaaaggaaa 9556673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 32426671 - 32426787
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||||||    
T  32426671 accttcttaccggaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgactaatttgaagaa 32426770  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||||||||||    
T  32426771 gaaaaggaaagagtcca 32426787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 4510336 - 4510450
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||||| |||| |||||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  4510336 accttcttgcgggaagattaatggaggacgacaagaaaattatacatgacttgaccaatagttcggtgaaaccaaaaaatattttgacaaatttgaagaa 4510435  T
Q  201 gaaaaggaaagagtc 215  Q
    ||||||  |||||||    
T  4510436 gaaaagacaagagtc 4510450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 4120791 - 4120679
Alignment:
Q  105 tcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaagaaa 204  Q
    ||||| ||||| ||||| |||||| ||||||||||||||||||||||||||| ||  ||  |||||||||||||||||||||||||||||||||||||||    
T  4120791 tcttgacggaagattaacggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgacaaatttgaagaagaaa 4120692  T
Q  205 aggaaagagtcca 217  Q
    |||||||||||||    
T  4120691 aggaaagagtcca 4120679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 40468210 - 40468094
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| ||  ||  ||||||||||||||||||||||| |||||||||||    
T  40468210 accttcttgccggaagattaatggaggacgacaagaagattgtacattacttgaccgattcttcggtgaaaccaaaaaatattttgactaatttgaagaa 40468111  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||| ||||||||||||    
T  40468110 gaaagggaaagagtcca 40468094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 51548534 - 51548422
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||||||| || |||||||||||| ||||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||||||    
T  51548534 accttcttgccgaaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgactaatttgaagaa 51548435  T
Q  201 gaaaaggaaagag 213  Q
    |||||||||||||    
T  51548434 gaaaaggaaagag 51548422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 1275390 - 1275274
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| |||||    
T  1275390 accttcttgtgggaagattaatggaggacgacaagaagattgtacatgacttgaccaatagttcgatgaaaccaaaaaatattttgacaaatttaaagaa 1275291  T
Q  201 gaaaaggaaagagtcca 217  Q
     |||||  |||||||||    
T  1275290 aaaaagacaagagtcca 1275274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 8263798 - 8263845
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatg 148  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8263798 accttcttgccggaagattaatggaggatgacaagaagattgtacatg 8263845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 8117649 - 8117763
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||||| |||| ||||||| |||| |||||  ||||||||| ||| ||||| || |||   || ||||||||||||||||||||||||||||||      
T  8117649 accttcttgcaggaaaattaatgaaggacgacaaagagattgtacgtgatttgactaagagtacggtaaaaccaaaaaatattttgacaaatttgaaggg 8117748  T
Q  201 gaaaaggaaagagtc 215  Q
     ||||| ||||||||    
T  8117749 aaaaagaaaagagtc 8117763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 25059939 - 25059826
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaagaa 203  Q
    ||||||| | || ||||||| |||| |||||| ||||| ||  |||||||||||| ||||  |  |||| ||||||||||||||||||||||||||| ||    
T  25059939 ttcttgcggaaagattaatgaaggacgacaaggagattatatgtgacttgaccaagagttcggcaaaacaaaaaaatattttgacaaatttgaagaaaaa 25059840  T
Q  204 aaggaaagagtcca 217  Q
    ||  ||||||||||    
T  25059839 aataaaagagtcca 25059826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 33399611 - 33399693
Alignment:
Q  117 attaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaaga 199  Q
    ||||| |||||||| ||||||| |||||| |||||||||||| ||||| |||   |||||||||||||||  |||||||||||    
T  33399611 attaaaggaggatggcaagaagcttgtacgtgacttgaccaagagtttggtgcttccaaaaaatattttgttaaatttgaaga 33399693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 13746719 - 13746665
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  13746719 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 13746665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 14399618 - 14399672
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| | ||||||||||||||||||||| ||||||||||||    
T  14399618 ttcttgccggtagattaaagaaggatgacaagaagattgtacgtgacttgaccaa 14399672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 30946640 - 30946586
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||||||||||||||| |||| ||||||||||||    
T  30946640 ttcttgccggtagattaaaggaggatgacaagaagatcgtacgtgacttgaccaa 30946586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 36816514 - 36816460
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  36816514 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 36816460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 46992244 - 46992190
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  46992244 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 46992190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 9428831 - 9428780
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgac 155  Q
    |||||||||| | ||||| |||||| |||||||||||||||| |||||||||    
T  9428831 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 9428780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 21955233 - 21955182
Alignment:
Q  107 ttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    ||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  21955233 ttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 21955182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 3949806 - 3949860
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  3949806 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 3949860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 6504953 - 6504899
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | | ||| |||||| || ||||||||||||||||||||||||||    
T  6504953 ttcttgccggtagactaaaggaggacgaaaagaagattgtacatgacttgaccaa 6504899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 6741950 - 6742004
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  6741950 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 6742004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 7842013 - 7841959
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||| | | ||||| |||||| |||||||||||||||| ||||||||||||    
T  7842013 ttcttgcctgtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 7841959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 8159981 - 8159927
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  8159981 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 8159927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 29930431 - 29930485
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||| ||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  29930431 ttcttggcggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 29930485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 29979585 - 29979639
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||| ||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  29979585 ttcttggcggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 29979639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 48249865 - 48249811
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||| ||||| ||||||||||||    
T  48249865 ttcttgccggtagattaaaggaggacgacaagaagactgtacgtgacttgaccaa 48249811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 45472412 - 45472526
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||  ||  |||||||||||||||||||| || |||||||||||    
T  45472412 accttcttgccggaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatatttttactaatttgaagaa 45472511  T
Q  201 gaaaaggaaagagtc 215  Q
    |||||||||||||||    
T  45472512 gaaaaggaaagagtc 45472526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 36360518 - 36360410
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaagaa 203  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||||||||||||||||||    
T  36360518 ttcttgtcggaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaaatattttgacaaatttgaagaagaa 36360419  T
Q  204 aaggaaaga 212  Q
    |||||||||    
T  36360418 aaggaaaga 36360410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 28862950 - 28863063
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||  ||  |||||| |||||||||||||||| |||||||||||    
T  28862950 accttcttgccggaagattaatgaaggacgacaagaagattgtacatgacttgaccgattcttcggtgaaatcaaaaaatattttgactaatttgaagaa 28863049  T
Q  201 gaaaaggaaagagt 214  Q
    ||||||||||||||    
T  28863050 gaaaaggaaagagt 28863063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 25593728 - 25593844
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||||| ||||||||||||||||| ||||||  |||||||  |||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  25593728 accttcttgcgggaatattaatggaggacgacaaggcgattgtatgtgacttgaccaatagttcggtaaaaccaaaaaatattttgacaaatttgaagaa 25593827  T
Q  201 gaaaaggaaagagtcca 217  Q
    ||||||  |||||||||    
T  25593828 gaaaagacaagagtcca 25593844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 7403684 - 7403794
Alignment:
Q  107 ttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaagaaaag 206  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||||||| ||  ||  |||||| ||||||||| |||||| |||||||||||||||||    
T  7403684 ttgccggaagattaatggaggacgacaagaagattgtatatgacttgaccgattcttcggtgaaatcaaaaaataatttgactaatttgaagaagaaaag 7403783  T
Q  207 gaaagagtcca 217  Q
    |||||||||||    
T  7403784 gaaagagtcca 7403794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 18887624 - 18887524
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgac-aaatttgaaga 199  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||  ||  ||||||||||||||||||||||| |||||||||||    
T  18887624 accttcttgccggaagattaatggaggacgacaagaagattgtacatgacttgactgattcttcggtgaaaccaaaaaatattttgacaaaatttgaaga 18887525  T
Q  200 a 200  Q
    |    
T  18887524 a 18887524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 39914013 - 39914092
Alignment:
Q  117 attaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttga 196  Q
    ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||| ||| ||||||||||||||| |||||||    
T  39914013 attaatgaaggatgacaagaagattgtacgtgacttgaccaagagtttggtgcaacaaaaaaatattttgacgaatttga 39914092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 7980210 - 7980156
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||    
T  7980210 ttcttgccggtagattaaaggaggatgacaagaagattgtacgtgacttgaccaa 7980156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 29355686 - 29355632
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  29355686 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 29355632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 38691937 - 38691883
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  38691937 ttcttgccggtaaattaaaggaggacgacaagaagattgtacgtgacttgaccaa 38691883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 41454900 - 41454954
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  41454900 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 41454954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 46974227 - 46974281
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  46974227 ttcttgccggtacattaaaggaggacgacaagaagattgtacgtgacttgaccaa 46974281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 50116761 - 50116659
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaagaa 203  Q
    |||||||||| | ||||| |||||| |||||||||||||| | |||||||||||| ||||   ||   |||| ||||||||||| | |||||||||| ||    
T  50116761 ttcttgccggtagattaaaggaggacgacaagaagattgttcgtgacttgaccaagagttagatgcttccaagaaatattttgatacatttgaagaacaa 50116662  T
Q  204 aag 206  Q
    |||    
T  50116661 aag 50116659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 44620101 - 44620050
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgac 155  Q
    |||||||||| | ||||| |||||| |||||||||||||||| |||||||||    
T  44620101 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 44620050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 3947459 - 3947405
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  3947459 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 3947405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 3984176 - 3984230
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  3984176 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 3984230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 5078998 - 5079052
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| | |||||||||||||| ||||||||||||    
T  5078998 ttcttgccggtagattaaaggaggacggcaagaagattgtacgtgacttgaccaa 5079052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 20350519 - 20350573
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  20350519 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 20350573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 21943362 - 21943308
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    ||||| |||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  21943362 ttcttaccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 21943308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 37015977 - 37016031
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||| | ||||||||||||    
T  37015977 ttcttgccggtagattaaaggaggacgacaagaagattgtgcgtgacttgaccaa 37016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 38775113 - 38775059
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  38775113 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 38775059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 44466645 - 44466699
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  44466645 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 44466699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 26466255 - 26466214
Alignment:
Q  117 attaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||    
T  26466255 attaaaggaggatgataagaagattgtacgtgacttgaccaa 26466214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 3896 - 4012
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||| |||||| |||||||||||| |||||||||||||||||| |||||||| ||  ||  |||||||||||||||||||||||||||||||||||    
T  3896 accttcttaccggaagattaatggaggacgacaagaagattgtacataacttgaccgattcttcggtgaaaccaaaaaatattttgacaaatttgaagaa 3995  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||||||||| ||||||    
T  3996 gaaaaggaaatagtcca 4012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 26685029 - 26684914
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||||| |||| |||||||||||| ||||||| ||||||||||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||    
T  26685029 accttcttgcgggaagattaatggaggacgacaagacgattgtacatgacttgatcaatagttctg-aaaaccaaaaaatattttgacaaatttgaagaa 26684931  T
Q  201 gaaaaggaaagagtcca 217  Q
    ||||||  |||||||||    
T  26684930 gaaaagacaagagtcca 26684914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 31859553 - 31859650
Alignment:
Q  120 aatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaagaaaaggaaagagtcca 217  Q
    ||||||||| | ||||||||||||||||||||||||| ||  ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31859553 aatggaggacggcaagaagattgtacatgacttgaccgattcttcggtgaaaccaaaaactattttgacaaatttgaagaagaaaaggaaagagtcca 31859650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 22864860 - 22864921
Alignment:
Q  95 caaggaaccttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgacc 156  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  22864860 caaggcaccttcttgccggaagattaatggaggaggacaagaagattgtacatgacttgacc 22864921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 9095253 - 9095301
Alignment:
Q  166 gtgaaaccaaaaaatattttgacaaatttgaagaagaaaaggaaagagt 214  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9095253 gtgaaaccaaaaaatattttgactaatttgaagaagaaaaggaaagagt 9095301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 30728553 - 30728630
Alignment:
Q  228 ggaaattgatcccctcctacttctttctctcatgcggtccctcctgcactattcttgtcccttcgattaatccaacgg 305  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||| |||| | ||| ||| |||| |||||||||    
T  30728553 ggaaatggatcccctcctgcttttttctctcatgcggtccctcctgcattattttcgtctctttgattgatccaacgg 30728630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 21358345 - 21358291
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||  | ||||| |||||| |||||||||||||||||||||||||||||    
T  21358345 ttcttgccgatagattaaaggaggacgacaagaagattgtacatgacttgaccaa 21358291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 23962327 - 23962273
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||  | ||||| |||||| |||||||||||||||||||||||||||||    
T  23962327 ttcttgccgatagattaaaggaggacgacaagaagattgtacatgacttgaccaa 23962273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 34111660 - 34111586
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaa 178  Q
    ||||||| |||| ||||| ||| |||||| |||||||||||| |||||||||||| ||||| | | |||||||||    
T  34111660 ttcttgcaggaagattaaaggaagatgactagaagattgtacgtgacttgaccaagagtttggagcaaccaaaaa 34111586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 1611749 - 1611695
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  1611749 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 1611695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 7362242 - 7362296
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | | ||| |||||| |||||||||||||||| ||||||||||||    
T  7362242 ttcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaa 7362296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 28250959 - 28251013
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||  | ||||| |||||| |||||||||||||||| ||||||||||||    
T  28250959 ttcttgccgatagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 28251013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 29287946 - 29287892
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | | ||| |||||| |||||||||||||||| ||||||||||||    
T  29287946 ttcttgccggtagactaaaggaggacgacaagaagattgtacgtgacttgaccaa 29287892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 31147385 - 31147435
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttga 154  Q
    |||||||||| | ||||| |||| |||||||||||||||||| ||||||||    
T  31147385 ttcttgccggtagattaaaggagaatgacaagaagattgtacgtgacttga 31147435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 18607072 - 18607113
Alignment:
Q  117 attaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    ||||| |||||| |||||||||||||||| ||||||||||||    
T  18607072 attaaaggaggacgacaagaagattgtacgtgacttgaccaa 18607113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 9639235 - 9639122
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaagaa 203  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||  ||  || ||||||||||||||||| || ||||||||||||||    
T  9639235 ttcttgctggaagattaatggaggacgacaagaagattgtacatgacttgaccgattcttcggttaaaccaaaaaatattttcactaatttgaagaagaa 9639136  T
Q  204 aaggaaagagtcca 217  Q
    ||||||||||||||    
T  9639135 aaggaaagagtcca 9639122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 28423476 - 28423360
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaagaa 200  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||||||||| ||||| ||   |||||||||||| |||||||||||||||||||||    
T  28423476 accttcttgcgggaagattaatggaggacgacaagaagattgtacatgacttgagcaatatttcaatgaaaccaaaaattattttgacaaatttgaagaa 28423377  T
Q  201 gaaaaggaaagagtcca 217  Q
    |||| |  |||||||||    
T  28423376 gaaaggacaagagtcca 28423360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 21535249 - 21535344
Alignment:
Q  101 accttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttga 196  Q
    |||||||||  |||| ||||||| | || |||||||||||| |||||||||||| ||| |||| ||| ||| ||||||||||||||||||||||||    
T  21535249 accttcttgtgggaagattaatgaatgacgacaagaagattatacatgacttgatcaagagttatgtaaaaacaaaaaatattttgacaaatttga 21535344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 24750721 - 24750773
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgacc 156  Q
    |||||||||| | ||||| ||||||||||||||||||||||||||| ||||||    
T  24750721 ttcttgccggtagattaaaggaggatgacaagaagattgtacatgaattgacc 24750773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 436374 - 436428
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  436374 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 436428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 3802564 - 3802510
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  3802564 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 3802510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 7264095 - 7264149
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  7264095 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 7264149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 11692812 - 11692758
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  11692812 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 11692758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 12907490 - 12907436
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  12907490 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 12907436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 24683462 - 24683504
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtaca 146  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  24683462 ttcttgcgggaagattaatggaggatgacaagaagattgtaca 24683504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 27275358 - 27275304
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  27275358 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 27275304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 41007978 - 41007924
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  41007978 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 41007924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 43949280 - 43949226
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| | |||||||||||||||||||||||||||    
T  43949280 ttcttgccggtagattaaaggaggacggcaagaagattgtacatgacttgaccaa 43949226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 45476421 - 45476475
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  45476421 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgaccaa 45476475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 39795033 - 39795084
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgac 155  Q
    |||||||||| | ||||| |||||| |||||||||||||||| |||||||||    
T  39795033 ttcttgccggtagattaaaggaggacgacaagaagattgtacgtgacttgac 39795084  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 212439 - 212385
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  212439 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 212385  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 5348230 - 5348284
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  5348230 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 5348284  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 10623452 - 10623398
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  10623452 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 10623398  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 17997157 - 17997075
Alignment:
Q  117 attaatggaggatgacaagaagattgtacatgacttgaccaatagttttgtgaaaccaaaaaatattttgacaaatttgaaga 199  Q
    ||||| ||||||||| ||||||||||||| |||||||||||| ||    |||   |||| ||||||||||| |||||||||||    
T  17997157 attaaaggaggatgataagaagattgtacgtgacttgaccaagagcaaggtgcttccaagaaatattttgataaatttgaaga 17997075  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 34920780 - 34920726
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    ||||| |||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  34920780 ttcttaccggtaaattaaaggaggacgacaagaagattgtacgtgacttgaccaa 34920726  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 41561075 - 41561129
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  41561075 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 41561129  T

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Target: scaffold0341 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 16355 - 16301
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| |||||||||||||||| ||||||||||||    
T  16355 ttcttgccggtagattaaaggaggaagacaagaagattgtacgtgacttgaccaa 16301  T

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Target: scaffold0116 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 12325 - 12379
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    ||||| |||| | |||||||||||| |||||||||||||||| ||||||||||||    
T  12325 ttctttccggtagattaatggaggacgacaagaagattgtacgtgacttgaccaa 12379  T

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Target: scaffold0494 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 1944 - 1998
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  1944 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 1998  T

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Target: scaffold0101 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 33872 - 33926
Alignment:
Q  104 ttcttgccggaatattaatggaggatgacaagaagattgtacatgacttgaccaa 158  Q
    |||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||    
T  33872 ttcttgccggtagattaaaggaggacgacaagaagatcgtacgtgacttgaccaa 33926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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