View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_27 (Length: 417)
Name: NF16817_low_27
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 417
Target Start/End: Original strand, 28207445 - 28207850
Alignment:
| Q |
12 |
caaaggagtcaaacaacaaagatgatgaggtcctaccaaagaattatgaagttgaacaagaaattgaccctcatgaggcatttgatttcaatgatattat |
111 |
Q |
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| T |
28207445 |
caaaggagtcaaacaacaaagatgatgaggtcctaccaaagaattatgaagttgaacaagaaattgaccctcatgaggcatttgatttcaatgatattat |
28207544 |
T |
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| Q |
112 |
aatgcaagattctgaattagattttggtaatattcaattgtggccctctttgcctcaaaatggtattccaaaagtttaatttacaaaccaatagtttgaa |
211 |
Q |
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| T |
28207545 |
aatgcaagattctgaattagattttggtaatattcaattgtggccctctttgcctcaaaatggtattccaaaagtttaatttacaaaccaatagtttgaa |
28207644 |
T |
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| Q |
212 |
aaaagtttatatgagattcatgaatttgtgatacttagtatgtatactgacgttggcaaattaatcaaggtcattaggtatctttgatgtatgatggatt |
311 |
Q |
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| T |
28207645 |
aaaagtttatatgagattcatgaatttgtgatacttagtaggtatactgacattggcaaattaatcaaggtcattaggtatctttgatgtatgatggatt |
28207744 |
T |
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| Q |
312 |
tcatatgtatacttttgaaaagtgttgttagagtagatggtagcttgaagaacaagcatcaaatatgcatcaataaataattctttcttccttcaatttt |
411 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |
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| T |
28207745 |
tcatatgtatacttttgaaaagtgttgttagattagattgtagcttgaagaacaagcatgaaatatgcatcaataaataatactttcttccttcattttt |
28207844 |
T |
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| Q |
412 |
agtact |
417 |
Q |
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| T |
28207845 |
agtact |
28207850 |
T |
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