View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_29 (Length: 415)
Name: NF16817_low_29
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 1364630 - 1365018
Alignment:
| Q |
11 |
aagcaaaggaagccgtagaagtcaatggctacctcattccaaaaggtgcacaaattttcgttaatgtgtgggctattggtagagaccctaaagtatggga |
110 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
1364630 |
aagcaaaggaagacgtagaagtcaatggctacctcattccaaaaggtgcacaaattttcgttaatgtgtgggctattggtagagatccaaaagtatggga |
1364729 |
T |
|
| Q |
111 |
caatccaaatttattttcgccagagaggtttttaggaacaaagcttgatatcaagggacaaaattttcagctcacgccgtttggcagtggaaggcgaata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1364730 |
caatccaaatttattttcgccagagaggtttttaggaacaaagcttgatatcaagggacaaaattttcagctcacgccgtttggcagtggaaggcgaata |
1364829 |
T |
|
| Q |
211 |
tgtcccggcttacctttggctatgaggatgttgcacatgatgttgggatcattactaatttcttttgattggaagctagaaaatggtatgaaacctgaag |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1364830 |
tgtcccggcttgcctttggctatgaggatgttgcacatgatgttgggatcattactaatttcttttgattggaagctagaaaatggtatgaaacctgaag |
1364929 |
T |
|
| Q |
311 |
aaatagacatggaagatgcaatacaaggacttgccttgagaaaatgtgaatccttgagagttattccaaccaaaatcagtaattaaatt |
399 |
Q |
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| T |
1364930 |
aaatagacatggaagatgcaatacaaggacttgccttgagaaaatgtgaatccttgagagttattccaaccaaaatcagtaattaaatt |
1365018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 1406794 - 1406406
Alignment:
| Q |
11 |
aagcaaaggaagccgtagaagtcaatggctacctcattccaaaaggtgcacaaattttcgttaatgtgtgggctattggtagagaccctaaagtatggga |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
1406794 |
aagcaaaggaagacgtagaagtcaatggctacctcattccaaaaggtgcacaaattttcgttaatgtgtgggctattggtagagatccaaaagtatggga |
1406695 |
T |
|
| Q |
111 |
caatccaaatttattttcgccagagaggtttttaggaacaaagcttgatatcaagggacaaaattttcagctcacgccgtttggcagtggaaggcgaata |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1406694 |
caatccaaatttattttcgccaaagaggtttttaggaacaaagcttgatatcaagggacaaaattttcagctcacgccgtttggcagtggaaggcgaata |
1406595 |
T |
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| Q |
211 |
tgtcccggcttacctttggctatgaggatgttgcacatgatgttgggatcattactaatttcttttgattggaagctagaaaatggtatgaaacctgaag |
310 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1406594 |
tgtcccggcttgcctttggctatgaggatgttgcacatgatgttgggatcattactaatttcttttgattggaagctagaaaatgatatgaaacctgaag |
1406495 |
T |
|
| Q |
311 |
aaatagacatggaagatgcaatacaaggacttgccttgagaaaatgtgaatccttgagagttattccaaccaaaatcagtaattaaatt |
399 |
Q |
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| T |
1406494 |
aaatagacatggaagatgcaatacaaggacttgccttgagaaaatgtgaatccttgagagttattccaaccaaaatcagtaattaaatt |
1406406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 1370319 - 1370707
Alignment:
| Q |
11 |
aagcaaaggaagccgtagaagtcaatggctacctcattccaaaaggtgcacaaattttcgttaatgtgtgggctattggtagagaccctaaagtatggga |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| |||| ||||||||| ||||||||||| |||||||||||||||||||| |||| ||||| |
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| T |
1370319 |
aagcaaaggaagatgtagaagtcaatggctacaccattccgaaagatgcacaaatcttcgttaatgtatgggctattggtagagacccagaagtgtggga |
1370418 |
T |
|
| Q |
111 |
caatccaaatttattttcgccagagaggtttttaggaacaaagcttgatatcaagggacaaaattttcagctcacgccgtttggcagtggaaggcgaata |
210 |
Q |
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|
||||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
1370419 |
caatccatatttattttcaccagagaggtttttgggaacaaagctcgatatcaagggacaaaattttcagctcacgccgtttggcagtggcagacgaatt |
1370518 |
T |
|
| Q |
211 |
tgtcccggcttacctttggctatgaggatgttgcacatgatgttgggatcattactaatttcttttgattggaagctagaaaatggtatgaaacctgaag |
310 |
Q |
| |
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|||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1370519 |
tgtcccggtttgccattagctatgaggatgttgcacatgatgttgggatcattactaatttcttttgattggaagctagaaaatgatatgaaacctgaag |
1370618 |
T |
|
| Q |
311 |
aaatagacatggaagatgcaatacaaggacttgccttgagaaaatgtgaatccttgagagttattccaaccaaaatcagtaattaaatt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1370619 |
aaatagacatggaagatgcaatacaaggacttgccttgagaaaatgtgaatccttgagagttattccaaccaaaatcagtaattaaatt |
1370707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 24484293 - 24484193
Alignment:
| Q |
79 |
tgggctattggtagagaccctaaagtatgggacaatccaaatttattttcgccagagaggtttttaggaacaaagcttgatatcaagggacaaaattttc |
178 |
Q |
| |
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||||| ||||| ||| ||||||| | ||||| ||||||||||||||||| || |||||||||| || || | || || |||||||||||||||||| |
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| T |
24484293 |
tgggccattggaagaaaccctaatatttgggataatccaaatttattttcacctcagaggtttttgggttcagaaattaatttcaagggacaaaattttc |
24484194 |
T |
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| Q |
179 |
a |
179 |
Q |
| |
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| |
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|
| T |
24484193 |
a |
24484193 |
T |
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