View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16817_low_30 (Length: 409)
Name: NF16817_low_30
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 48470555 - 48470947
Alignment:
| Q |
1 |
gatgaaccgtataaagctgcatgaaaacgtgtgacactgtcccttttaggaagatagtaatcatatgcagcaaaatgaacccaatccaaattcttctgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48470555 |
gatgaaccgtataaagctgcatgaaaacgtgtgacactgtcccttttaggaagatagtaatcatatgcagcaaaatgaacccaatccaaattcttctgca |
48470654 |
T |
|
| Q |
101 |
ttgattcaaaaggataactaagggaatctgaagctttaagataataacctgtcatcaccaacactaattctgatcttttagtgttacttgcctcagaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48470655 |
ttgattcaaaaggataactaagggaatctgaagctttaagataataacctgtcatcaccaacactaattctgatcttttagtgttacttgcctcagaagt |
48470754 |
T |
|
| Q |
201 |
tatcgcaactcgccactctttcaaaagggttgcgaaattgacaagatctttgccctgttttggcactgcaccacataagtctatgccttgaaagtcaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48470755 |
tatcgcaactcgccactctttcaaaagggttgcgaaattgacaagatctttgccctgttttggcactgcaccacaaaagtctatgccttgaaagtcaaat |
48470854 |
T |
|
| Q |
301 |
tgtcttgctgttctgatggaggaatcaatgaaagattttgtataagaagattggtttatcaatgagttaaaaagtgaagaattttctcctcca |
393 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48470855 |
tgtcttgctgttctgatggaggaaccaatgaaagattttctataagaagattggtttatcaatgagttaaaaagtgaagaattttgtcctcca |
48470947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 48478917 - 48479309
Alignment:
| Q |
1 |
gatgaaccgtataaagctgcatgaaaacgtgtgacactgtcccttttaggaagatagtaatcatatgcagcaaaatgaacccaatccaaattcttctgca |
100 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48478917 |
gatgaaccatataaaggtgcatgaaaacgtgtgacactgtcccttttaggaagatagtaattatatgcaacaaaatgaacccaatccaaattcttctgca |
48479016 |
T |
|
| Q |
101 |
ttgattcaaaaggataactaagggaatctgaagctttaagataataacctgtcatcaccaacactaattctgatcttttagtgttacttgcctcagaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48479017 |
ttgattcaaaaggataactaagggaatctgaagctttaagataataacctgtcatcaccaacactaattctgatcttttagtgtttcttgcctcagaagt |
48479116 |
T |
|
| Q |
201 |
tatcgcaactcgccactctttcaaaagggttgcgaaattgacaagatctttgccctgttttggcactgcaccacataagtctatgccttgaaagtcaaat |
300 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
48479117 |
tattgcaattcgccactctttcaaaagggttgcgaaattaacaagatctttgccctgttttggccctgcaccacaaaagtctatgccttgaaagtcaaat |
48479216 |
T |
|
| Q |
301 |
tgtcttgctgttctgatggaggaatcaatgaaagattttgtataagaagattggtttatcaatgagttaaaaagtgaagaattttctcctcca |
393 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48479217 |
cgtcttgccgttctgatggaggaatcaatgaaagattttctataagaagattggtttatcaacgagttaaaaagtgaagaattttctcctcca |
48479309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 119 - 393
Target Start/End: Complemental strand, 48883309 - 48883035
Alignment:
| Q |
119 |
taagggaatctgaagctttaagataataacctgtcatcaccaacactaattctgatcttttagtgttacttgcctcagaagttatcgcaactcgccactc |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48883309 |
taagggaatctgaaggtttaagataataacctgtcatcagcaacactaattctgatcttttagtgttacttgcctcagaagttatcgcaactcgccactc |
48883210 |
T |
|
| Q |
219 |
tttcaaaagggttgcgaaattgacaagatctttgccctgttttggcactgcaccacataagtctatgccttgaaagtcaaattgtcttgctgttctgatg |
318 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
48883209 |
tttcaaaagggttgtgaaattgacaagaactttgccctgttttagccctgcaccacaaaagtctatgccttgaaagtcaaatcgtcttgccgttctgatg |
48883110 |
T |
|
| Q |
319 |
gaggaatcaatgaaagattttgtataagaagattggtttatcaatgagttaaaaagtgaagaattttctcctcca |
393 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
48883109 |
gaggaatcaatgaaagattttctataagaagattggtttaacaatgagttaaaaagtgaagaattttgtcctcca |
48883035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 38 - 387
Target Start/End: Original strand, 48487423 - 48487772
Alignment:
| Q |
38 |
tgtcccttttaggaagatagtaatcatatgcagcaaaatgaacccaatccaaattcttctgcattgattcaaaaggataactaagggaatctgaagcttt |
137 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48487423 |
tgtcctttttaggaagatagtaatcatatgcaacaaaatgaacccaatccaaattcttctgcattgattcaaaaggataactaaaggaatctgaagcttt |
48487522 |
T |
|
| Q |
138 |
aagataataacctgtcatcaccaacactaattctgatcttttagtgttacttgcctcagaagttatcgcaactcgccactctttcaaaagggttgcgaaa |
237 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| |||| | |||||||||| ||||| |||||||||||||| | |||| | || |||||||||||||| ||| |
|
|
| T |
48487523 |
aagataataacctgccatcaccaaaactaactctggttttttagtgtttcttgcttcagaagttatcgctattcgcaattccttcaaaagggttgccaaa |
48487622 |
T |
|
| Q |
238 |
ttgacaagatctttgccctgttttggcactgcaccacataagtctatgccttgaaagtcaaattgtcttgctgttctgatggaggaatcaatgaaagatt |
337 |
Q |
| |
|
|| |||| || ||||| || |||||| | |||| ||||||||||||||||| || | | |||||||||| ||||||| |||||||||||||||| |
|
|
| T |
48487623 |
tttgcaagttcattgccttgctttggcttaactccacgaaagtctatgccttgaaacccatagtttcttgctgttttgatggaagaatcaatgaaagatt |
48487722 |
T |
|
| Q |
338 |
ttgtataagaagattggtttatcaatgagttaaaaagtgaagaattttct |
387 |
Q |
| |
|
| | | ||||||||||||||||| |||| ||||| |||||| |||||| |
|
|
| T |
48487723 |
tcctgttagaagattggtttatcagtgaggaaaaaactgaagagttttct |
48487772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48883366 - 48883307
Alignment:
| Q |
1 |
gatgaaccgtataaagctgcatgaaaacgtgtgacactgtcccttttaggaagatagtaa |
60 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48883366 |
gatgaaccatataaaggtgcatgaaaacgtgtgacattgtcccttttaggaagatagtaa |
48883307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University