View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_34 (Length: 372)
Name: NF16817_low_34
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 36 - 294
Target Start/End: Original strand, 34021448 - 34021706
Alignment:
| Q |
36 |
atttatatgggaaattaataactgttgaattttgtgtaaccaattatgttcttaaattccatgaacaagaattaaggagcaatatatgatgatctttaaa |
135 |
Q |
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| T |
34021448 |
atttatatgggaaattaataactgttgaattttatgtaaccaattatgtttttaaattccatgaacaagaattaaggagcaatataagatgatctttaaa |
34021547 |
T |
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| Q |
136 |
tttgttgatcgagtggagtataatgttcgaaaagttattgatttgagtcccataccctaaacttttattaacnnnnnnntaacattagatctttattccc |
235 |
Q |
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| T |
34021548 |
tttgttgatcgagtggagtctaatgttcgaaaagttattgatttgagtcccataccctaaacttttattaacaaaaaaataacattatatctttattccc |
34021647 |
T |
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| Q |
236 |
aacacttatatgatctaagtatatatattcttgccttttgcatcaggcatggtggtgat |
294 |
Q |
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| T |
34021648 |
aacacttatatgatctaagtatatatattcttgccttttgcatcaggcatggtgatgat |
34021706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 34021706 - 34021746
Alignment:
| Q |
312 |
tgatgatgagtgactctctgccccactatttcatttacagt |
352 |
Q |
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| T |
34021706 |
tgatgatgagtgactctctgccccaccctttcatttacagt |
34021746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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