View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_35 (Length: 368)

Name: NF16817_low_35
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_35
NF16817_low_35
[»] chr3 (9 HSPs)
chr3 (1-163)||(18177624-18177785)
chr3 (161-264)||(18177427-18177530)
chr3 (1-41)||(20204925-20204965)
chr3 (1-41)||(24835072-24835112)
chr3 (1-40)||(16724876-16724915)
chr3 (1-40)||(35269852-35269891)
chr3 (265-306)||(18177398-18177439)
chr3 (1-41)||(22261768-22261808)
chr3 (1-41)||(22266691-22266731)
[»] chr4 (2 HSPs)
chr4 (1-42)||(28745641-28745682)
chr4 (1-41)||(39936187-39936227)
[»] chr6 (5 HSPs)
chr6 (1-41)||(24977772-24977812)
chr6 (1-41)||(12770774-12770814)
chr6 (1-41)||(24976341-24976381)
chr6 (1-40)||(12766760-12766799)
chr6 (1-41)||(12800106-12800146)
[»] chr5 (1 HSPs)
chr5 (1-41)||(40235004-40235044)
[»] chr2 (3 HSPs)
chr2 (1-41)||(14106067-14106107)
chr2 (1-41)||(43822076-43822116)
chr2 (1-41)||(44909831-44909871)
[»] chr1 (4 HSPs)
chr1 (1-41)||(9826456-9826496)
chr1 (1-41)||(31279279-31279319)
chr1 (1-40)||(4449635-4449674)
chr1 (1-41)||(9812060-9812100)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 18177785 - 18177624
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataattctaannnnnnnnnngtgcgtttttcattttatgtaatttacctttctatcctttgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||| || |||          ||||||||| |||||||||||||||||||||||||||||||||    
T  18177785 cataacccacaggtccctggatcgaaaccaggctctgatatttttaattttttttt-gtgcgttttccattttatgtaatttacctttctatcctttgtc 18177687  T
Q  101 tagttttccaggacatacatatagttacatgccaacgtatttatacagcaaaaatttcagata 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18177686 tagttttccaggacatacatatagttacatgccaacgtatttatacagcaaaaatttcagata 18177624  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 18177530 - 18177427
Alignment:
Q  161 atatacatatacaaccacaatgtttgagaaagtatttcactacctctcaaaaattatgtttgaaaaatttatcaatgtttgagaaatatcaataactttc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18177530 atatacatatacaaccacaatgtttgagaaagtatttcactacctctcaaaaattatgtttgaaaaatttatcaatgtttgagaaatatcaataactttt 18177431  T
Q  261 ttgt 264  Q
    ||||    
T  18177430 ttgt 18177427  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20204925 - 20204965
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20204925 cataacccacaggtccctggatcgaaaccaggctctgataa 20204965  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24835112 - 24835072
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24835112 cataacccacaggtccctggatcgaaaccaggctctgataa 24835072  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16724915 - 16724876
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16724915 cataacccacaggtccctggatcgaaaccaggctctgata 16724876  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35269891 - 35269852
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35269891 cataacccacaggtccctggatcgaaaccaggctctgata 35269852  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 18177439 - 18177398
Alignment:
Q  265 ataacttttttgttttgtaactatcaatttatttcactctct 306  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  18177439 ataacttttttgtgttgtaactatcaatttatttcactctct 18177398  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22261768 - 22261808
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  22261768 cataacccacaggtccctggatcgaaaccaggctttgataa 22261808  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22266731 - 22266691
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  22266731 cataacccacaggtccctggatcgaaaccaggctttgataa 22266691  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28745682 - 28745641
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataat 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28745682 cataacccacaggtccctggatcgaaaccaggctctgataat 28745641  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39936187 - 39936227
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39936187 cataacccacaggtccctggatcgaaaccaggctctgataa 39936227  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24977812 - 24977772
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24977812 cataacccacaggtccctggatcgaaaccaggctctgataa 24977772  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12770814 - 12770774
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  12770814 cataacccacaggtccctggattgaaaccaggctctgataa 12770774  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24976381 - 24976341
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  24976381 cataacccacaggtccctggatcgaaaccaggctttgataa 24976341  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12766799 - 12766760
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgata 40  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  12766799 cataacccataggtccctggatcgaaaccaggctctgata 12766760  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12800146 - 12800106
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  12800146 cataacctacaggtccctggatcgaaaccaggctctaataa 12800106  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40235044 - 40235004
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40235044 cataacccacaggtccctggatcgaaaccaggctctgataa 40235004  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14106107 - 14106067
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14106107 cataacccacaggtccctggatcgaaaccaggctctgataa 14106067  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43822076 - 43822116
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43822076 cataacccacaggtccctggatcgaaaccaggctctgataa 43822116  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44909831 - 44909871
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44909831 cataacccacaggtccctggatcgaaaccaggctctgataa 44909871  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9826496 - 9826456
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9826496 cataacccacaggtccctggatcgaaaccaggctctgataa 9826456  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31279319 - 31279279
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31279319 cataacccacaggtccctggatcgaaaccaggctctgataa 31279279  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4449674 - 4449635
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4449674 cataacccacaggtccctggatcgaaaccaggctctgata 4449635  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9812100 - 9812060
Alignment:
Q  1 cataacccacaggtccctggatcgaaaccaggctctgataa 41  Q
    ||||||||| ||||||||||||  |||||||||||||||||    
T  9812100 cataacccataggtccctggattaaaaccaggctctgataa 9812060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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