View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_36 (Length: 363)

Name: NF16817_low_36
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_36
NF16817_low_36
[»] chr1 (2 HSPs)
chr1 (4-363)||(7100852-7101205)
chr1 (213-363)||(7580238-7580388)
[»] chr5 (15 HSPs)
chr5 (199-361)||(17984338-17984500)
chr5 (202-348)||(30437259-30437405)
chr5 (270-363)||(29873620-29873713)
chr5 (274-363)||(29854757-29854846)
chr5 (213-363)||(30520135-30520285)
chr5 (213-363)||(30560475-30560625)
chr5 (210-355)||(30675795-30675940)
chr5 (239-343)||(30476841-30476945)
chr5 (210-355)||(30484855-30485000)
chr5 (210-355)||(30751100-30751245)
chr5 (272-343)||(17417237-17417308)
chr5 (219-362)||(30240909-30241052)
chr5 (210-355)||(30061826-30061971)
chr5 (274-337)||(30329412-30329475)
chr5 (270-355)||(30337092-30337177)
[»] chr4 (3 HSPs)
chr4 (215-357)||(13618042-13618182)
chr4 (210-355)||(20295089-20295234)
chr4 (237-343)||(52353427-52353533)
[»] chr3 (1 HSPs)
chr3 (250-343)||(25292494-25292587)
[»] chr7 (1 HSPs)
chr7 (272-312)||(26708814-26708854)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 7101205 - 7100852
Alignment:
Q  4 tcaacctgtaaacttcgtatcacctacatacttccacattgagcaacagctacttgcttgctcaattcaactcatatttcatcctcaactcaaaccagta 103  Q
    |||||||||||||||||||||||||||||||||| ||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101205 tcaacctgtaaacttcgtatcacctacatacttcgac------caacagctacttgcttgctcaattcaactcatatttcatcctcaactcaaaccagta 7101112  T
Q  104 catactttcccatatttaatctcatttatcaccactcatatttcgtcctcaactcataatcttatcacctacatactttcccattctgnnnnnnntgact 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  7101111 catactttcccatatttaatctcatttatcaccactcatatttcgtcctcaactcataatcttatcacctacatactttcccattctgaaaaaaatgact 7101012  T
Q  204 gatgccttgcttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaa 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101011 gatgccttgcttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaa 7100912  T
Q  304 ccaccttagaacttattaaggctgttcttgaagacgctgaaaagaagcaattaacagacc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100911 ccaccttagaacttattaaggctgttcttgaagacgctgaaaagaagcaattaacagacc 7100852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 213 - 363
Target Start/End: Original strand, 7580238 - 7580388
Alignment:
Q  213 cttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccaccttag 312  Q
    |||| |||||||||| | |||||||  |||||  || ||||||||||| ||||||||| ||||||||||||||||||| |||| |||||||  |||||||    
T  7580238 cttggtgttgtgtttcacaacctgatgtctctggttcaaaacgaattttcaactctatttggaatcaagtcaaaggctcaaaagctatcaagaaccttag 7580337  T
Q  313 aacttattaaggctgttcttgaagacgctgaaaagaagcaattaacagacc 363  Q
    |||| || |||||||||||| ||||||||||||||||||||||||| ||||    
T  7580338 aactgatcaaggctgttcttcaagacgctgaaaagaagcaattaactgacc 7580388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 199 - 361
Target Start/End: Complemental strand, 17984500 - 17984338
Alignment:
Q  199 tgactgatgccttgcttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaact 298  Q
    ||||||| ||||| |||  |||||||||| |||||||| |   ||||  | |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  17984500 tgactgacgccttacttcgtgttgtgtttaagaacctggcgcttcttgctcaaaatgaatttgcaactctatctgcaatcaagtcaaaggctgaaaaact 17984401  T
Q  299 atcaaccaccttagaacttattaaggctgttcttgaagacgctgaaaagaagcaattaacaga 361  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||    
T  17984400 atcaaccaccttagaacttattaatgctgttctcgaagacgctgaaaagaagcatttgacaga 17984338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 348
Target Start/End: Complemental strand, 30437405 - 30437259
Alignment:
Q  202 ctgatgccttgcttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatc 301  Q
    ||||| |||| ||||  ||||||||||||||  ||| |||||| ||| |||| |||||| | ||| | |||||||||||||||||||||||||| |||||    
T  30437405 ctgatccctttcttggagttgtgtttgagaatttgatatctctgcttcaaaatgaattttctactatttctggaatcaagtcaaaggctgaaaacctatc 30437306  T
Q  302 aaccaccttagaacttattaaggctgttcttgaagacgctgaaaaga 348  Q
    |||||||||||     || ||||||||||||||||| ||||||||||    
T  30437305 aaccaccttagttgacatcaaggctgttcttgaagatgctgaaaaga 30437259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 29873713 - 29873620
Alignment:
Q  270 tctggaatcaagtcaaaggctgaaaaactatcaaccaccttagaacttattaaggctgttcttgaagacgctgaaaagaagcaattaacagacc 363  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  | || ||||||||||||||||| ||||||||||| ||| | |||||||    
T  29873713 tctggtatcaagtcaaaggctgaaaaactatcaaccaccttagatttgatcaaggctgttcttgaagatgctgaaaagaaacaagtcacagacc 29873620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 29854846 - 29854757
Alignment:
Q  274 gaatcaagtcaaaggctgaaaaactatcaaccaccttagaacttattaaggctgttcttgaagacgctgaaaagaagcaattaacagacc 363  Q
    ||||||||||||||||||||||||||||||||||||||||  | || || |||||||||||||| ||||||||||| ||| | |||||||    
T  29854846 gaatcaagtcaaaggctgaaaaactatcaaccaccttagatttgatcaatgctgttcttgaagatgctgaaaagaaacaagtcacagacc 29854757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 363
Target Start/End: Original strand, 30520135 - 30520285
Alignment:
Q  213 cttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccaccttag 312  Q
    |||| |||||||||||| || ||   ||||||| || |||| |||||||||||  | |||||||||||||| ||||||  ||| ||||||||||||||||    
T  30520135 cttggtgttgtgtttgaaaatctactatctcttgttcaaaatgaatttgcaaccatttctggaatcaagtccaaggctctaaagctatcaaccaccttag 30520234  T
Q  313 aacttattaaggctgttcttgaagacgctgaaaagaagcaattaacagacc 363  Q
    |  | || ||||| ||||||||||| ||||| ||||| ||| |||||||||    
T  30520235 atttgatcaaggccgttcttgaagatgctgagaagaaacaaataacagacc 30520285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 363
Target Start/End: Original strand, 30560475 - 30560625
Alignment:
Q  213 cttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccaccttag 312  Q
    |||| |||||||||||| || ||   ||||||| || |||| |||||||||||  | |||||||||||||| ||||||  ||| ||||||||||||||||    
T  30560475 cttggtgttgtgtttgaaaatctactatctcttgttcaaaatgaatttgcaaccatttctggaatcaagtccaaggctctaaagctatcaaccaccttag 30560574  T
Q  313 aacttattaaggctgttcttgaagacgctgaaaagaagcaattaacagacc 363  Q
    |  | || ||||| ||||||||||| ||||| ||||| ||| |||||||||    
T  30560575 atttgatcaaggccgttcttgaagatgctgagaagaaacaaataacagacc 30560625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 210 - 355
Target Start/End: Original strand, 30675795 - 30675940
Alignment:
Q  210 ttgcttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccacct 309  Q
    |||||||  ||||||||||| ||  |||| ||||| ||| |||| |||||| ||||  | ||||||||||||||||||| | |||| ||||||| || ||    
T  30675795 ttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttcaaccatttctggaatcaagtcaaaggttcaaaagctatcaaacaact 30675894  T
Q  310 tagaacttattaaggctgttcttgaagacgctgaaaagaagcaatt 355  Q
    |||  |  || ||||||||||||||||| ||||| ||||| |||||    
T  30675895 tagttcacatcaaggctgttcttgaagatgctgagaagaaacaatt 30675940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 30476945 - 30476841
Alignment:
Q  239 atctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccaccttagaacttattaaggctgttcttgaagac 338  Q
    ||||||| || |||| |||||||||||  | ||||||||||  ||||||||||||||  | ||||||||||| || || || |||||||||||||||||     
T  30476945 atctcttgttcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgaaaagttgtcaaccaccttggatctgatcaaggctgttcttgaagat 30476846  T
Q  339 gctga 343  Q
    |||||    
T  30476845 gctga 30476841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 355
Target Start/End: Complemental strand, 30485000 - 30484855
Alignment:
Q  210 ttgcttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccacct 309  Q
    |||||||  |||||||| || ||  |||||||||| ||| |||| |||||| ||||  | ||||||||||||||||||||| |||| ||||||  || ||    
T  30485000 ttgcttggagttgtgttcgaaaatttgacatctctccttcaaaatgaattttcaaccatttctggaatcaagtcaaaggctcaaaagctatcagacaact 30484901  T
Q  310 tagaacttattaaggctgttcttgaagacgctgaaaagaagcaatt 355  Q
    |||  |  || || |||||||||||||| ||||| ||||| |||||    
T  30484900 tagttcacatcaaagctgttcttgaagatgctgagaagaaacaatt 30484855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 355
Target Start/End: Complemental strand, 30751245 - 30751100
Alignment:
Q  210 ttgcttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccacct 309  Q
    |||||||  ||||||||||| ||  |||| ||||| ||| |||| |||||| ||||  | |||||||| |||||||||||| |||| ||||||  || ||    
T  30751245 ttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttcaaccatttctggaattaagtcaaaggctcaaaagctatcagacaact 30751146  T
Q  310 tagaacttattaaggctgttcttgaagacgctgaaaagaagcaatt 355  Q
    |||  |  || ||||||||||||||||| ||||| ||||| |||||    
T  30751145 tagttcgcatcaaggctgttcttgaagatgctgagaagaaacaatt 30751100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 17417237 - 17417308
Alignment:
Q  272 tggaatcaagtcaaaggctgaaaaactatcaaccaccttagaacttattaaggctgttcttgaagacgctga 343  Q
    |||||| ||||||||||  ||||| |||||||||||||| || || || ||||||||||||||||| |||||    
T  17417237 tggaattaagtcaaaggtcgaaaagctatcaaccaccttggatctgatcaaggctgttcttgaagatgctga 17417308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 362
Target Start/End: Original strand, 30240909 - 30241052
Alignment:
Q  219 gttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccaccttagaactta 318  Q
    ||||||||||| ||| |||  ||||| ||  |||| |||||||||||  | ||||||||||||||||||||| |||| || |||  |||||||||  | |    
T  30240909 gttgtgtttgataacttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatga 30241008  T
Q  319 ttaaggctgttcttgaagacgctgaaaagaagcaattaacagac 362  Q
    | || || ||||||||||| ||||| ||||| ||| | ||||||    
T  30241009 tcaaagccgttcttgaagatgctgagaagaaacaagtcacagac 30241052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 355
Target Start/End: Complemental strand, 30061971 - 30061826
Alignment:
Q  210 ttgcttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccacct 309  Q
    |||||||  ||||||||||| ||  ||||  |||| ||| |||| |||||| ||||  | |||||||| |||||||||| | |||| ||||||| || ||    
T  30061971 ttgcttggagttgtgtttgaaaatttgacggctctccttcaaaatgaattttcaaccatttctggaattaagtcaaaggttcaaaagctatcaaacaact 30061872  T
Q  310 tagaacttattaaggctgttcttgaagacgctgaaaagaagcaatt 355  Q
    |||  |  || ||||||||||||||||| ||||| ||||| |||||    
T  30061871 tagttcacatcaaggctgttcttgaagatgctgagaagaaacaatt 30061826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 30329412 - 30329475
Alignment:
Q  274 gaatcaagtcaaaggctgaaaaactatcaaccaccttagaacttattaaggctgttcttgaaga 337  Q
    |||||||||  || ||| |||| ||||||||||||||||| ||||| |||| ||||||||||||    
T  30329412 gaatcaagtttaatgctcaaaagctatcaaccaccttagatcttatcaaggttgttcttgaaga 30329475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 30337092 - 30337177
Alignment:
Q  270 tctggaatcaagtcaaaggctgaaaaactatcaaccaccttagaacttattaaggctgttcttgaagacgctgaaaagaagcaatt 355  Q
    |||||||| |||||||||||| |||| ||||||  || |||||  |  || ||||||||||||||||| ||||| ||||| |||||    
T  30337092 tctggaattaagtcaaaggctcaaaagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaatt 30337177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 357
Target Start/End: Complemental strand, 13618182 - 13618042
Alignment:
Q  215 tgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccaccttagaa 314  Q
    ||||||| ||||||||| |||||  | ||| |||||||||||||||| |||||||| |||||||| | |||||||| |||| ||||||||  |||| |||    
T  13618182 tgatgttttgtttgagagcctgaggtttctacttaaaaacgaatttgtaactctatttggaatcatgccaaaggctcaaaagctatcaac--ccttggaa 13618085  T
Q  315 cttattaaggctgttcttgaagacgctgaaaagaagcaattaa 357  Q
    || ||||||| ||||||||||||| ||||||||||||||||||    
T  13618084 ctgattaaggttgttcttgaagacactgaaaagaagcaattaa 13618042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 355
Target Start/End: Original strand, 20295089 - 20295234
Alignment:
Q  210 ttgcttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccacct 309  Q
    |||||||  ||||||| ||| ||  |||| ||||| ||| |||| |||||||||||  | |||||||||| ||||||||||  ||| ||||||  || ||    
T  20295089 ttgcttggagttgtgtctgaaaatttgacgtctctccttcaaaatgaatttgcaaccatttctggaatcaggtcaaaggctcgaaagctatcagacaact 20295188  T
Q  310 tagaacttattaaggctgttcttgaagacgctgaaaagaagcaatt 355  Q
    |||  |  || ||||||||||||||||| ||||| ||||| |||||    
T  20295189 tagttcacatcaaggctgttcttgaagatgctgagaagaaacaatt 20295234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 52353533 - 52353427
Alignment:
Q  237 acatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccaccttagaacttattaaggctgttcttgaag 336  Q
    |||||||| ||| |||| |||||| | ||  |||||  |||||||||||| |||||||| || |||| ||| ||||| || || ||||| ||||||||||    
T  52353533 acatctctacttcaaaatgaattttccaccgtatcttcaatcaagtcaaaagctgaaaacctgtcaaacacgttagatctcatcaaggcagttcttgaag 52353434  T
Q  337 acgctga 343  Q
    | |||||    
T  52353433 atgctga 52353427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 25292494 - 25292587
Alignment:
Q  250 aaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccaccttagaacttattaaggctgttcttgaagacgctga 343  Q
    |||| |||||||||||  | ||| ||||||||||||| |||||||| ||||||| |||||| || || ||  |||||||||||||||| |||||    
T  25292494 aaaatgaatttgcaaccatttctagaatcaagtcaaaagctgaaaagctatcaatcaccttggatctgatataggctgttcttgaagatgctga 25292587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 26708854 - 26708814
Alignment:
Q  272 tggaatcaagtcaaaggctgaaaaactatcaaccaccttag 312  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  26708854 tggaatcaagtcaaaggctgaaaacctatcaaccaccttag 26708814  T

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