View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_38 (Length: 345)
Name: NF16817_low_38
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 12061602 - 12061382
Alignment:
| Q |
1 |
aattcgatttttaaaattcctcttttctaacggataacgaataaataatgtgtgctaataataagttttaattttacaagacccttaatttttatgtgat |
100 |
Q |
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| T |
12061602 |
aattcgatttttaaaattcctcttttataaccggtaacgaataaataatgtgtgctaataataagttttaattttacaagagccttaatttttatgtcat |
12061503 |
T |
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| Q |
101 |
tatctcacttacggttcaannnnnnnnaaggaaattattgtaacttgtaatatatttataaagactaaaaacagtatataacccaaaatgtaatttttgc |
200 |
Q |
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| T |
12061502 |
tatctcacttacagttcaattttttttaaggaaattattgtaatttgtagtatatttataaagactaaaaacagtatataacccaaaatgtaatttttgc |
12061403 |
T |
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| Q |
201 |
tcttaaataaaatataaaaca |
221 |
Q |
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||||||||||||||||||||| |
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| T |
12061402 |
tcttaaataaaatataaaaca |
12061382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 212 - 330
Target Start/End: Complemental strand, 12061358 - 12061240
Alignment:
| Q |
212 |
atataaaacagacttaaatagatattaatgactagttttacttaccaacgatattttgactcttgaaaaacagaaccaaccggtattcaaaatctgaaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12061358 |
atataaaacagacttaaatagatattaatgactagttttacttaccaacgatattttgactcttgaaaaacagaaccaaccggtattcaaaatctgaaca |
12061259 |
T |
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| Q |
312 |
aatcatacagtcaaaaaat |
330 |
Q |
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| T |
12061258 |
aatcatacagtcaaaaaat |
12061240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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