View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_4 (Length: 758)

Name: NF16817_low_4
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_4
NF16817_low_4
[»] chr8 (1 HSPs)
chr8 (18-746)||(41301591-41302337)


Alignment Details
Target: chr8 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 746
Target Start/End: Original strand, 41301591 - 41302337
Alignment:
Q  18 agttaagcatcctaagtcatgaaccaaatacacattaattgagcataaagaaatgggacgtgagagtatatataattctataacttagaaaccagtcata 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301591 agttaagcatcctaagtcatgaaccaaatacacattaattgcgcataaagaaatgggacgtgagagtatatataattctataacttagaaaccagtcata 41301690  T
Q  118 aatctcttccacggcgaacaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataannnnnnnng-atttattcaaacac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  41301691 aatctcttccacggcgaacaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataattatttatttatttattcaaacac 41301790  T
Q  217 aattgtatatgtagttcagaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301791 aattgtatatgtagttcagaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcat 41301890  T
Q  317 atatggttttgtctaatatgcataagtaagaagatcttgcatcatacacaaatgtctttttcaccattgaattaataaggcgcatcacatcatatctaat 416  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  41301891 atatggttttgtctaatatgcataagtaagaagatcttacatcatatacaaatatcttttttaccattgaattaataaggcgcatcacatcatatctaat 41301990  T
Q  417 tattttaatgatccaatgataaatagtttgtgcataatgtaagaccatc-tatctcatttatgcatcatataattggcctccaaaaatatgta------- 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||           
T  41301991 tattttaatgatccaatgataaatagtttgtgcataatgtaagaccttcgtatctcatttatgcatcatataattggcctccaaaaatatgtattactat 41302090  T
Q  509 ttaagctggnnnnnnnnnatatgaaatcttatatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttatat 608  Q
    |||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41302091 ttaagctgg-gtttttttatatgaaatcttatatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttatat 41302189  T
Q  609 aatcatgatgagattcttgaaagaaagaaagttccactataagaaaaacac----------ccgattactcccaaaatttaaaatatttcttttttggga 698  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  41302190 aatcatgatgagactcttgaaagaaagaaagttccactataagaaaaacacaactggttttccgattactcccaaaatttaaaatatttcttttttggga 41302289  T
Q  699 agtattaaatttattttcctgccctatttttctacgggttacccccta 746  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41302290 agtattaaatttattttcctgccctatttttctacgggttacccccta 41302337  T

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