View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_41 (Length: 340)
Name: NF16817_low_41
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 56484441 - 56484748
Alignment:
| Q |
16 |
attgacttattattgttaacttgatgtgtataaaactgcaacccaaatttacatataagtgacccttgcctaccgtaaaagtaaaaactgatacaggaaa |
115 |
Q |
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| T |
56484441 |
attgacttattattgttaacttgatgtgtataaaactgcaacccaaatttacatataagtgaccttttcctaccgtaaaagtaaaaactgatacaggaaa |
56484540 |
T |
|
| Q |
116 |
gctactctccttgtaattatggggtataacaggtgaaatctggcgacaaactatttttaatgctggatcaggttctgcatttgagcagtagagatgatca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56484541 |
gctactctccttgtaattatggggtataacaggtgaaatctggcgacaaactatttttaatgctggatcaggttctgcatttgagcagtagagatgatca |
56484640 |
T |
|
| Q |
216 |
ttataagagatatgatacagtataaatatcatagtggccttgaaagtattccaattagcctggcttaccctcatgtactgtccatgccctcgggtataat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56484641 |
ttataagagatatgatacagtataaatatcatagtggacttgaaagtattccaattagcctggcttaccctcatgtactgtccatgccctcgggtataat |
56484740 |
T |
|
| Q |
316 |
gcatgata |
323 |
Q |
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|||||||| |
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| T |
56484741 |
gcatgata |
56484748 |
T |
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