View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_44 (Length: 325)

Name: NF16817_low_44
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_44
NF16817_low_44
[»] chr8 (3 HSPs)
chr8 (9-308)||(44945482-44945781)
chr8 (11-308)||(44943830-44944127)
chr8 (42-144)||(44940692-44940794)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 44945482 - 44945781
Alignment:
Q  9 acatcatcactctcctttctaaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaac 108  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44945482 acatcatcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaac 44945581  T
Q  109 aagtaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaa 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||||    
T  44945582 aagcaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaggagtaactagcgcgattcaa 44945681  T
Q  209 tgtcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44945682 tgtcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattg 44945781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 44943830 - 44944127
Alignment:
Q  11 atcatcactctcctttctaaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaa 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44943830 atcatcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaacaa 44943929  T
Q  111 gtaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaatg 210  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44943930 gcaaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaagagtgactagcacgattcaatg 44944029  T
Q  211 tcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattg 308  Q
    |||||||||||||||||||||||||||||||||||| |||||| || ||| |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  44944030 tcttagcaatatattccatatatgcctttttatctcggagtgtaggtgcggtgattaaaaaactgacatgacaatagcaccttatagactgaacattg 44944127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 44940692 - 44940794
Alignment:
Q  42 tgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaagtaaacattggtataggcccataaatccata 141  Q
    ||||||||||||||||||  ||| ||||||||||| ||||||||| | || ||||| || ||  ||||| ||||||| ||||| ||||||||||||||||    
T  44940692 tgaagatcccttgtgatttgagtggttgtatccaagaagtacaaaataaatgatgtgaagcaagaacaaataaacatgggtatgggcccataaatccata 44940791  T
Q  142 gga 144  Q
    |||    
T  44940792 gga 44940794  T

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