View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_47 (Length: 313)

Name: NF16817_low_47
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_47
NF16817_low_47
[»] chr2 (2 HSPs)
chr2 (13-301)||(43923921-43924210)
chr2 (73-122)||(7959635-7959684)
[»] chr5 (6 HSPs)
chr5 (73-196)||(19242396-19242531)
chr5 (133-198)||(12560129-12560195)
chr5 (73-196)||(9211391-9211526)
chr5 (133-196)||(9369959-9370023)
chr5 (82-123)||(12556973-12557014)
chr5 (149-196)||(38783816-38783864)
[»] chr3 (12 HSPs)
chr3 (73-196)||(26640710-26640845)
chr3 (61-196)||(20798762-20798910)
chr3 (133-196)||(9450694-9450758)
chr3 (133-196)||(17724543-17724607)
chr3 (133-196)||(19025772-19025836)
chr3 (133-196)||(28838474-28838538)
chr3 (73-124)||(28838403-28838454)
chr3 (73-123)||(9450779-9450829)
chr3 (73-123)||(17724628-17724678)
chr3 (73-123)||(19025857-19025907)
chr3 (82-124)||(28830447-28830489)
chr3 (133-196)||(28830509-28830573)
[»] chr1 (4 HSPs)
chr1 (133-196)||(35923230-35923294)
chr1 (150-196)||(1466767-1466814)
chr1 (73-124)||(1466851-1466902)
chr1 (73-123)||(35923315-35923365)
[»] chr7 (6 HSPs)
chr7 (133-196)||(19538846-19538910)
chr7 (73-124)||(19545426-19545477)
chr7 (133-175)||(19551984-19552026)
chr7 (82-124)||(47228607-47228649)
chr7 (87-124)||(47465706-47465743)
chr7 (133-196)||(19545497-19545561)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 43923921 - 43924210
Alignment:
Q  13 atgaacacatgtacttatcatgcttaccnnnnnnnnagagcgagttgcgcgcgaacgcaacccc-actggaacaaattataatgtaggctccaccatttg 111  Q
    ||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||    
T  43923921 atgaacacatgtacttatcatgcttaccttttttttagagcgagttgcgcgcgaacgcaaaccctactggaacaaattataatgtaggctccaccacttg 43924020  T
Q  112 agtagaccttagattagaacccaatgaaggtcacttgcctaggtcatgggccttcttgatcaccattgaccccattcaggtaagtgacttatcatgctta 211  Q
    ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43924021 agtagaccttaaactagaacccaatgaaggtcacttgcctaggccatgggccttcttgatcaccattgaccccattcaggtaagtgacttatcatgctta 43924120  T
Q  212 ctttatgcttttaccgctggcctaatgaaatgtctatgttatatttgtaaaaaatgtaatatatattgtattactttgttagtaatttat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43924121 ctttatgcttttaccgctggcctaatgaaatgtctatgttatatttgtaaaaaatgtaatatatattgtattactttgttagtaatttat 43924210  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 7959635 - 7959684
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagacctta 122  Q
    |||||| | |||||||||| |||||||||||||||||||  |||||||||    
T  7959635 ccccacagcaacaaattatgatgtaggctccaccatttggatagacctta 7959684  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 19242396 - 19242531
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagaccttagattagaaccc-----------aatgaaggtcacttgcctaggtcatggg 161  Q
    |||| ||| |||||||||| ||||||||||||||| ||| |||||||||||| ||| ||||           |||| |||||||||||||||| ||||||    
T  19242396 ccccgctgcaacaaattatgatgtaggctccaccacttgggtagaccttagactagcacccctcctaagtgcaatggaggtcacttgcctaggccatggg 19242495  T
Q  162 ccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    |||||||||||| ||||||||||||| |||||||||    
T  19242496 ccttcttgatcacccattgaccccatccaggtaagt 19242531  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 12560195 - 12560129
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagtga 198  Q
    ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  12560195 caatggaggtcacttgcctaggccatgggccttcttgatcacccattgaccccatccaggtaagtga 12560129  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 9211391 - 9211526
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagaccttagattagaacc-----------caatgaaggtcacttgcctaggtcatggg 161  Q
    |||||| | |||||||||| ||||||||||||||| ||| |||||||||||  ||| |||           |||||||||||||||||||||| ||||||    
T  9211391 ccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagcacctcttcaaagtgcaatgaaggtcacttgcctaggccatggg 9211490  T
Q  162 ccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    ||||| |||||| ||||||||||||| |||||||||    
T  9211491 ccttcctgatcacccattgaccccatccaggtaagt 9211526  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 9370023 - 9369959
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||    
T  9370023 caatgaaggtcacttgcctaggccatgggcctttttgatcacccattgaccccatccaggtaagt 9369959  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 12557014 - 12556973
Alignment:
Q  82 aacaaattataatgtaggctccaccatttgagtagaccttag 123  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  12557014 aacaaattatgatgtaggctccaccacttgagtagaccttag 12556973  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 38783864 - 38783816
Alignment:
Q  149 cctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    |||||| ||||| |||||||||||| ||||||||||||| |||||||||    
T  38783864 cctaggccatggaccttcttgatcatccattgaccccatccaggtaagt 38783816  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 196
Target Start/End: Complemental strand, 26640845 - 26640710
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagaccttagattagaaccc-----------aatgaaggtcacttgcctaggtcatggg 161  Q
    |||||||| |||||||||| ||||||| ||||||| ||| |||||||||||| ||| ||||           |||| |||||||||| ||||| ||||||    
T  26640845 ccccactgcaacaaattatgatgtaggttccaccacttgggtagaccttagactagcacccctcctaagtgcaatggaggtcacttgtctaggccatggg 26640746  T
Q  162 ccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    |||||||||||| |||| |||||||| |||||||||    
T  26640745 ccttcttgatcacccatcgaccccatccaggtaagt 26640710  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 20798762 - 20798910
Alignment:
Q  61 gcgcgaacgcaa-ccccactggaacaaattataatgtaggctccaccatttgagtagaccttagattagaacc-----------caatgaaggtcacttg 148  Q
    |||||||||||| |||| ||| |||||||||| ||||||||||||||| ||| |||||||||||  ||| |||           ||||| ||||||||||    
T  20798762 gcgcgaacgcaagccccgctgcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagcacctttcctaagtgcaatggaggtcacttg 20798861  T
Q  149 cctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    |||||| ||||  | |||||||||| ||||||||||||| |||||||||    
T  20798862 cctaggccatgaacattcttgatcacccattgaccccatccaggtaagt 20798910  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 9450758 - 9450694
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    ||||| ||||||| | |||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  9450758 caatggaggtcaccttcctaggccatgggccttcttgatcacccattgaccccatccaggtaagt 9450694  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 17724607 - 17724543
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    ||||| ||||||| | |||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  17724607 caatggaggtcaccttcctaggccatgggccttcttgatcacccattgaccccatccaggtaagt 17724543  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 19025836 - 19025772
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    ||||| ||||||| | |||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  19025836 caatggaggtcaccttcctaggccatgggccttcttgatcacccattgaccccatccaggtaagt 19025772  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 28838474 - 28838538
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    ||||| ||||||| | |||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  28838474 caatggaggtcaccttcctaggccatgggccttcttgatcacccattgaccccatccaggtaagt 28838538  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 28838403 - 28838454
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagaccttaga 124  Q
    |||||| | |||||||||| ||||||||||||||| ||| ||||||||||||    
T  28838403 ccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaga 28838454  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 9450829 - 9450779
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagaccttag 123  Q
    |||||| | |||||||||| ||||||||||||||| ||| |||||||||||    
T  9450829 ccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttag 9450779  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 17724678 - 17724628
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagaccttag 123  Q
    |||||| | |||||||||| ||||||||||||||| ||| |||||||||||    
T  17724678 ccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttag 17724628  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 19025907 - 19025857
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagaccttag 123  Q
    |||||| | |||||||||| ||||||||||||||| ||| |||||||||||    
T  19025907 ccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttag 19025857  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 28830447 - 28830489
Alignment:
Q  82 aacaaattataatgtaggctccaccatttgagtagaccttaga 124  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||    
T  28830447 aacaaattatgatgtaggctccaccacttgggtagaccttaga 28830489  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 28830509 - 28830573
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    ||||| ||||||| |  ||||| ||||| |||||||||||| ||||||||||||| |||||||||    
T  28830509 caatggaggtcacctttctaggccatggaccttcttgatcatccattgaccccatccaggtaagt 28830573  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 35923294 - 35923230
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    ||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||||    
T  35923294 caatggaggtcacttgcctaggccatgggccttcatgatcacccattgaccccatccaggtaagt 35923230  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 1466814 - 1466767
Alignment:
Q  150 ctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  1466814 ctaggccatgggccttcttgatcacccattgaccccatccaggtaagt 1466767  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 1466902 - 1466851
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagaccttaga 124  Q
    |||||| | |||||||||| ||||||||||||||| ||| ||||||||||||    
T  1466902 ccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaga 1466851  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 35923365 - 35923315
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagaccttag 123  Q
    |||||| | |||||||||| ||||||||||||||| ||| |||||||||||    
T  35923365 ccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttag 35923315  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 19538846 - 19538910
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatca-ccattgaccccattcaggtaagt 196  Q
    ||||| ||||||||| |||||| ||||||||||| |||||| ||||||||||||| |||||||||    
T  19538846 caatggaggtcactttcctaggccatgggccttcgtgatcacccattgaccccatccaggtaagt 19538910  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 19545426 - 19545477
Alignment:
Q  73 ccccactggaacaaattataatgtaggctccaccatttgagtagaccttaga 124  Q
    |||||| | |||||||||| ||||||||||||||| ||| ||||||||||||    
T  19545426 ccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaga 19545477  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 19551984 - 19552026
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatcacc 175  Q
    ||||| |||||||| | ||||||||||||||||||||||||||    
T  19551984 caatggaggtcactcgtctaggtcatgggccttcttgatcacc 19552026  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 47228649 - 47228607
Alignment:
Q  82 aacaaattataatgtaggctccaccatttgagtagaccttaga 124  Q
    |||||||||||||||||||||||||| |||  |||||||||||    
T  47228649 aacaaattataatgtaggctccaccacttggatagaccttaga 47228607  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 47465706 - 47465743
Alignment:
Q  87 attataatgtaggctccaccatttgagtagaccttaga 124  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  47465706 attatgatgtaggctccaccacttgagtagaccttaga 47465743  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 19545497 - 19545561
Alignment:
Q  133 caatgaaggtcacttgcctaggtcatgggccttcttgatcacc-attgaccccattcaggtaagt 196  Q
    ||||| |||||||||  ||||| ||| ||||||| |||||||| ||||||||||| |||||||||    
T  19545497 caatggaggtcacttttctaggccataggccttcatgatcacccattgaccccatccaggtaagt 19545561  T

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