View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16817_low_48 (Length: 311)
Name: NF16817_low_48
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 55908013 - 55907727
Alignment:
| Q |
9 |
gacatcatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatatta |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55908013 |
gacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcgtctatatta |
55907914 |
T |
|
| Q |
109 |
taataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907913 |
taataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattac |
55907814 |
T |
|
| Q |
209 |
tactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaac |
295 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55907813 |
tactactgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaac |
55907727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 547943 - 548019
Alignment:
| Q |
219 |
gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaac |
295 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| ||| ||||| |||||| |||||| |||||||||||| |
|
|
| T |
547943 |
gtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaac |
548019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 547773 - 547908
Alignment:
| Q |
40 |
aacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagct |
139 |
Q |
| |
|
||||||| || |||||| |||||||||||| | | ||| || || ||||| | ||||||| ||||| |||| ||| || | ||||||||||||||||| |
|
|
| T |
547773 |
aacatcacaaactcttcgagaaactcacaactttgacacaagtgaaaaagcaatgagtcatttatatagtaatgaccagataaattaaccttgcggagct |
547872 |
T |
|
| Q |
140 |
taggaagcaccattgccatagtctttacccaaacat |
175 |
Q |
| |
|
|||||||| | ||| ||||| |||||||| ||||| |
|
|
| T |
547873 |
taggaagcgctgttgacatagcctttaccccaacat |
547908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 1527472 - 1527362
Alignment:
| Q |
37 |
ttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcgga |
136 |
Q |
| |
|
|||||||||| || ||||| |||||| ||||||| ||||| || |||||||| ||||||||| | || | || ||| ||||||||||||||| ||| |
|
|
| T |
1527472 |
ttcaacatcaaaatctcttgaagaaatacacaatttttacacaagtgcaaaagcaacgagtcatttgcatagtgatgaccagagagattaaccttgtgga |
1527373 |
T |
|
| Q |
137 |
gcttaggaagc |
147 |
Q |
| |
|
||||||||||| |
|
|
| T |
1527372 |
gcttaggaagc |
1527362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 3437755 - 3437708
Alignment:
| Q |
212 |
tactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaa |
259 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
3437755 |
tactaaggtcaagtacttcaagtaaagggaagcaatcagagataagaa |
3437708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 1036949 - 1036663
Alignment:
| Q |
9 |
gacatcatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatatta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1036949 |
gacatcatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcgtctatatta |
1036850 |
T |
|
| Q |
109 |
taataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036849 |
taataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattac |
1036750 |
T |
|
| Q |
209 |
tactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaac |
295 |
Q |
| |
|
||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||||||||||| |
|
|
| T |
1036749 |
tactattgaagtcaagttcttcaaggaaaggaaagcaatcagaaataagaacaagatcattgttacatatagaagcaatgttggaac |
1036663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 17627281 - 17627169
Alignment:
| Q |
48 |
aacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagcttaggaagc |
147 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || ||||||||| | |||||| ||||| |||| || || | ||| | ||||||||||||||||||| |
|
|
| T |
17627281 |
aacctcttcgagaaactcacaatttttacacaagtgcaaaagtaatgagtcacttatatcgtaatgacgagataaatttatcttgcggagcttaggaagc |
17627182 |
T |
|
| Q |
148 |
accattgccatag |
160 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
17627181 |
accattgacatag |
17627169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 44244814 - 44244857
Alignment:
| Q |
34 |
catttcaacatcataacctcttcaagaaactcacaattcttaca |
77 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44244814 |
catttcaacatcctaacctcttcaagaaactcacaattcttaca |
44244857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University