View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_5 (Length: 738)

Name: NF16817_low_5
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_5
NF16817_low_5
[»] chr8 (1 HSPs)
chr8 (18-725)||(41301591-41302314)


Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 18 - 725
Target Start/End: Original strand, 41301591 - 41302314
Alignment:
Q  18 agttaagcatcctaagtcatgaaccaaatacacattaattgagcataaagaaatgggacgtgagagtatatataattctataacttagaaaccagtcata 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301591 agttaagcatcctaagtcatgaaccaaatacacattaattgcgcataaagaaatgggacgtgagagtatatataattctataacttagaaaccagtcata 41301690  T
Q  118 aatctcttccacggcgaacaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataannnnnnnng-atttattcaaacac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  41301691 aatctcttccacggcgaacaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataattatttatttatttattcaaacac 41301790  T
Q  217 aattgtatatgtagttcagaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301791 aattgtatatgtagttcagaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcat 41301890  T
Q  317 atatggttttgtctaatatgcataagtaagaagatcttgcatcatacacaaatgtctttttcaccattgaattaataaggcgcatcacatcatatctaat 416  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  41301891 atatggttttgtctaatatgcataagtaagaagatcttacatcatatacaaatatcttttttaccattgaattaataaggcgcatcacatcatatctaat 41301990  T
Q  417 tattttaatgatccaatgataaatagtttgtgcataatgtaagaccatc-tatctcatttatgcatcatataattggcctccaaaaatatgta------- 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||           
T  41301991 tattttaatgatccaatgataaatagtttgtgcataatgtaagaccttcgtatctcatttatgcatcatataattggcctccaaaaatatgtattactat 41302090  T
Q  509 ttaagctggnnnnnnnnnnnatatgaaatcttatatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttat 608  Q
    |||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41302091 ttaagctgg---gtttttttatatgaaatcttatatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttat 41302187  T
Q  609 ataatcatgatgagattcttgaaagaaagaaagttccactataagaaaaacac----------ccgattactcccaaaatttaaaatatttcttttttgg 698  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  41302188 ataatcatgatgagactcttgaaagaaagaaagttccactataagaaaaacacaactggttttccgattactcccaaaatttaaaatatttcttttttgg 41302287  T
Q  699 gaagtattaaatttattttcctgccct 725  Q
    |||||||||||||||||||||||||||    
T  41302288 gaagtattaaatttattttcctgccct 41302314  T

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