View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_52 (Length: 282)

Name: NF16817_low_52
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_52
NF16817_low_52
[»] chr5 (3 HSPs)
chr5 (19-188)||(1224956-1225122)
chr5 (206-267)||(1225110-1225171)
chr5 (46-132)||(10327601-10327686)
[»] chr4 (2 HSPs)
chr4 (73-267)||(80082-80278)
chr4 (19-58)||(80044-80083)
[»] chr7 (3 HSPs)
chr7 (19-132)||(49034699-49034812)
chr7 (203-267)||(49034598-49034662)
chr7 (152-188)||(49034647-49034683)
[»] chr3 (2 HSPs)
chr3 (53-188)||(15822769-15822901)
chr3 (203-267)||(15822720-15822784)
[»] chr8 (2 HSPs)
chr8 (148-188)||(22563734-22563774)
chr8 (230-265)||(22563779-22563814)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 1224956 - 1225122
Alignment:
Q  19 ttgtaattccattcgcattgtaggggaatgtacagtacacgcctctttttatagacaagttgctttccgttcttcacgaaattttcgatgtgggacataa 118  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1224956 ttgtaattccattcccattgtaggtgaatgtacagtacacgcctctttttatagacaagttgctttccgttcttcacgaaattttcgatgtgggacataa 1225055  T
Q  119 aattgcaagcttaannnnnnnnnnnnnnngaacaagcaagcttaaaactttcaagtgtatggattatgtt 188  Q
    ||||||||||||||               ||||||||||||||||||||||||||| |||||||||||||    
T  1225056 aattgcaagcttaa---tattttttttttgaacaagcaagcttaaaactttcaagtatatggattatgtt 1225122  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 1225110 - 1225171
Alignment:
Q  206 tatggattatgttatatactccacttgctatatcgatatataaaaaactttaggtgaggatt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1225110 tatggattatgttatatactccacttgctatatcgatatataaaaaactttaggtgaggatt 1225171  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 10327601 - 10327686
Alignment:
Q  46 atgtacagtacacgcctctttttatagacaagttgctttccgttcttcacgaaattttcgatgtgggacataaaattgcaagcttaa 132  Q
    |||||| ||||||||||||||||||||   | |||||||  || |||||| ||| || |||||||||||| | ||||||||||||||    
T  10327601 atgtactgtacacgcctctttttataggttacttgcttt-tgtccttcacaaaacttccgatgtgggacacacaattgcaagcttaa 10327686  T

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Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 73 - 267
Target Start/End: Original strand, 80082 - 80278
Alignment:
Q  73 acaagttgctttccgttcttcacgaaattttcgatgtgggacataaaattgcaagcttaannnnnnnnnnnnnnngaacaagcaagcttaaaactttcaa 172  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||    
T  80082 acaagttgctttccattcttcacgaaattttcgatgtgggacataaaattgcaagcttaa-tttttattttttttgaacaagcaagcttaaaactttcaa 80180  T
Q  173 gtgtatggattatgttcctt---cnnnnnnnnngtgtatggattatgttatatactccacttgctatatcgatatataaaaaactttaggtgaggatt 267  Q
    ||||||||||||||||||||             ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  80181 gtgtatggattatgttccttaaaaaaaaaaaaagtgtatggattatgttatatactccacttactatattgatatataaaaaattttaggtgaggatt 80278  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 80044 - 80083
Alignment:
Q  19 ttgtaattccattcgcattgtaggggaatgtacagtacac 58  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  80044 ttgtaattccattcgcattgtaggtgaatgtacagtacac 80083  T

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Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 49034812 - 49034699
Alignment:
Q  19 ttgtaattccattcgcattgtaggggaatgtacagtacacgcctctttttatagacaagttgctttccgttcttcacgaaattttcgatgtgggacataa 118  Q
    |||||||||||||| |||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  49034812 ttgtaattccattcccattttaggtgaatgtactgtacacgtctctttttatagacaagttgctttccgtttttcccgaaattttcgatgtgggacataa 49034713  T
Q  119 aattgcaagcttaa 132  Q
    ||||||||||||||    
T  49034712 aattgcaagcttaa 49034699  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 49034662 - 49034598
Alignment:
Q  203 gtgtatggattatgttatatactccacttgctatatcgatatataaaaaactttaggtgaggatt 267  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49034662 gtgtatgaattatgttatatactccagttgctatatcgatatataaaaaactttaggtgaggatt 49034598  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 49034683 - 49034647
Alignment:
Q  152 aagcaagcttaaaactttcaagtgtatggattatgtt 188  Q
    |||||||||||||||||||||||||||| ||||||||    
T  49034683 aagcaagcttaaaactttcaagtgtatgaattatgtt 49034647  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 15822901 - 15822769
Alignment:
Q  53 gtacacgcctctttttatagacaagttgctttccgttcttcacgaaattttcgatgtgggacataaaattgcaagcttaannnnnnnnnnnnnnngaaca 152  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                ||||    
T  15822901 gtacacgcctctttttatagataagttgttttccgttcttcacgaaattttcgatgtgggacataaaattgcaagcttaatttttttttttta---aaca 15822805  T
Q  153 agcaagcttaaaactttcaagtgtatggattatgtt 188  Q
    ||||||||||||||||||||||||||||||||||||    
T  15822804 agcaagcttaaaactttcaagtgtatggattatgtt 15822769  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 15822784 - 15822720
Alignment:
Q  203 gtgtatggattatgttatatactccacttgctatatcgatatataaaaaactttaggtgaggatt 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15822784 gtgtatggattatgttatatactccacttgctatatcgatatataaaaaactttaggtgaggatt 15822720  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 22563734 - 22563774
Alignment:
Q  148 gaacaagcaagcttaaaactttcaagtgtatggattatgtt 188  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  22563734 gaacaagcaagcttaaaactttcaagtatatggattatgtt 22563774  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 22563779 - 22563814
Alignment:
Q  230 ttgctatatcgatatataaaaaactttaggtgagga 265  Q
    ||||||||||||||||||||||||||||||||||||    
T  22563779 ttgctatatcgatatataaaaaactttaggtgagga 22563814  T

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