View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_53 (Length: 279)
Name: NF16817_low_53
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 6428573 - 6428829
Alignment:
| Q |
3 |
tatttagtaactataactttctgatctcatgttattatatgtgctgcacatgctttgctatgaagtttgtaaaagcttaagaacacaactccatgttcat |
102 |
Q |
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| T |
6428573 |
tatttagtaactataactttctgatctcatgttattatatgtgctgcacatgctttgctatgaagtttgtaaaagcttaagaacacaactccatgttcat |
6428672 |
T |
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| Q |
103 |
tgtcctaactagtttgttttcaggtttttatattggtcataagcatggttttcagtatcttgtgatacatgtgagtcgtaccccgattcgattct-aact |
201 |
Q |
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| T |
6428673 |
tgtcctaactagtttgttttcaggtttttatattggtcataagcatggttttcagtatcttgtgatacatgtgagtcataccccgattcgattctaaact |
6428772 |
T |
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| Q |
202 |
gaacccagtcgatacgaatctctagtgttaatctatttgaacatgtatttcatatca |
258 |
Q |
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| T |
6428773 |
gaacccagtcgatacgaatctctagtgttaatctatttgaacatgtatttcatatca |
6428829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 6421227 - 6421338
Alignment:
| Q |
3 |
tatttagtaactataactttctgatctcatgttattatatgtgctgcacatgctttgctatgaagtttgtaaaagcttaagaacacaactccatgttcat |
102 |
Q |
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| T |
6421227 |
tatttagtatctataactttctgatgtcatggtttt---tgtgctgcacatgctatgctatgaagtttgtaaaagcttaagaagataactccatgttcat |
6421323 |
T |
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| Q |
103 |
tgtcctaactagttt |
117 |
Q |
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| T |
6421324 |
tgcgcaaactagttt |
6421338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 6367357 - 6367425
Alignment:
| Q |
3 |
tatttagtaactataactttctgatctcatgttattatatgtgctgcacatgctttgctatgaagtttgtaa |
74 |
Q |
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| T |
6367357 |
tatttagtaactataactttctgatgtcatggtttt---tgtgctgcacatgctttgctatgaagtttgtaa |
6367425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 6373034 - 6373075
Alignment:
| Q |
44 |
tgctgcacatgctttgctatgaagtttgtaaaagcttaagaa |
85 |
Q |
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| T |
6373034 |
tgctgcacatgctttactatgaagattgtaaaagcttaagaa |
6373075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 6380905 - 6381004
Alignment:
| Q |
17 |
aactttctgatctcatgttattatatgtgctgcacatgctttgctatgaagtttgtaaaagcttaagaacacaactccatgttcattgtcctaactagtt |
116 |
Q |
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| T |
6380905 |
aactttctgatgtcatggt-ttctttgtgctacacatgcttcggtatgatgtttgcaaaagcttaagaagataatttcatgttcattgtgcaaactagtt |
6381003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 6359809 - 6359864
Alignment:
| Q |
102 |
ttgtcctaactagtttgttttcaggtttttatattggtcataagcatggttttcag |
157 |
Q |
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| T |
6359809 |
ttgtccaaactagtttgttttcctgtatttacattggtcataagcatggttatcag |
6359864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 6359745 - 6359812
Alignment:
| Q |
3 |
tatttagtaactataactttctgatctcatgttattatatgtgctgcacatgctttgctatgaagtttgt |
72 |
Q |
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| T |
6359745 |
tatttagtaactataactttctgctgtcatg--cttttttgtgctgcacatgctttgctataaactttgt |
6359812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 30864067 - 30863976
Alignment:
| Q |
156 |
agtatcttgtgatacatgtgagtcgtaccccgattcgattctaac-tgaacccagtcgatacgaatctctagtgttaatctatttgaacatg |
246 |
Q |
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| T |
30864067 |
agtatcttacgatacatgtgagtcgtatctcgattcaatactaaaatgaactcaatcgatacaaatctctagtgtgtatctatttggacatg |
30863976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 30035335 - 30035436
Alignment:
| Q |
146 |
catggttttcagtatcttgtgatacatgtgagtcgtaccccgattcgattc-taactgaacccagtcgatacgaatctctagtgttaatctatttgaaca |
244 |
Q |
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| T |
30035335 |
catggttatcagtatcttatgatacatgtgagtcgtatctcaattcaatacttaattgaattcaatcgatacaaatctcaagtgtatatctatttggaca |
30035434 |
T |
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| Q |
245 |
tg |
246 |
Q |
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|| |
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| T |
30035435 |
tg |
30035436 |
T |
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