View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16817_low_55 (Length: 272)
Name: NF16817_low_55
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_55 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 30889731 - 30889476
Alignment:
| Q |
1 |
gtaattatgtattcttctatagtggttgcttcgcctccaggattcattccctcagctagcaaagccaattctcctatagatcaaagtaaaatacaattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30889731 |
gtaattatgtattcttctatagtggttgcttcgcctccaggattcattccctcagctagcaaagccaattctcctatagatcaaagtaaaatacaattca |
30889632 |
T |
|
| Q |
101 |
gtatccatgttagcctcatgaaaataatgtcggaaacaataatgaggcctgttttgacgaacaacttaattaagcattcacaatataactgtttatgtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30889631 |
gtatccatgttagcctcatgaaaataatgtcggaaacaataatgaggcctgttttgacgaacaacttaattaagcattcacaatataactgcttatgtat |
30889532 |
T |
|
| Q |
201 |
aaactatccgtataacagatgaataaacgaagacagatagtccagctatttatttt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30889531 |
aaactatccgtataacagatgaataaacgaagacagatagtccagctatttatttt |
30889476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University