View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_56 (Length: 271)

Name: NF16817_low_56
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_56
NF16817_low_56
[»] chr1 (8 HSPs)
chr1 (11-271)||(16750145-16750404)
chr1 (50-195)||(25853556-25853699)
chr1 (51-184)||(47453700-47453831)
chr1 (50-195)||(10138450-10138593)
chr1 (99-195)||(11812139-11812235)
chr1 (197-267)||(47453573-47453643)
chr1 (203-262)||(10138641-10138701)
chr1 (203-261)||(25853732-25853791)
[»] chr2 (12 HSPs)
chr2 (52-271)||(25480253-25480482)
chr2 (52-271)||(25487859-25488088)
chr2 (50-195)||(17972178-17972321)
chr2 (50-195)||(30649340-30649483)
chr2 (50-195)||(30654039-30654182)
chr2 (50-195)||(9182223-9182366)
chr2 (189-262)||(30649517-30649591)
chr2 (137-195)||(28450439-28450497)
chr2 (127-181)||(30616168-30616222)
chr2 (87-187)||(27417694-27417799)
chr2 (219-262)||(17972082-17972126)
chr2 (219-262)||(30654229-30654273)
[»] chr8 (14 HSPs)
chr8 (50-195)||(4239833-4239976)
chr8 (50-195)||(23083388-23083531)
chr8 (50-195)||(17023382-17023528)
chr8 (50-195)||(17553875-17554021)
chr8 (50-195)||(40127398-40127541)
chr8 (50-187)||(38184105-38184243)
chr8 (50-195)||(8320133-8320279)
chr8 (101-195)||(25369239-25369333)
chr8 (189-268)||(34116962-34117040)
chr8 (186-268)||(17023559-17023641)
chr8 (186-268)||(17554052-17554134)
chr8 (189-262)||(40127290-40127364)
chr8 (219-268)||(38184014-38184063)
chr8 (219-262)||(4239737-4239781)
[»] chr5 (15 HSPs)
chr5 (50-195)||(36939017-36939160)
chr5 (50-195)||(39521578-39521721)
chr5 (50-195)||(36426792-36426935)
chr5 (50-195)||(559917-560060)
chr5 (50-195)||(26670426-26670572)
chr5 (50-195)||(26942023-26942169)
chr5 (50-195)||(41999856-41999999)
chr5 (70-195)||(9911792-9911915)
chr5 (189-262)||(42000033-42000107)
chr5 (197-262)||(26670614-26670680)
chr5 (197-262)||(26942211-26942277)
chr5 (189-262)||(36938909-36938983)
chr5 (197-262)||(39521763-39521829)
chr5 (197-268)||(36426977-36427050)
chr5 (219-262)||(560107-560151)
[»] chr4 (12 HSPs)
chr4 (50-195)||(33465857-33466000)
chr4 (55-195)||(37261367-37261505)
chr4 (50-195)||(31271921-31272064)
chr4 (70-187)||(12877498-12877613)
chr4 (119-195)||(39318870-39318946)
chr4 (219-271)||(32222572-32222624)
chr4 (50-148)||(19105180-19105279)
chr4 (189-268)||(19105343-19105421)
chr4 (203-263)||(31272095-31272156)
chr4 (219-271)||(15134776-15134828)
chr4 (203-261)||(37261277-37261336)
chr4 (138-172)||(41815294-41815328)
[»] chr3 (14 HSPs)
chr3 (50-195)||(3686537-3686680)
chr3 (50-195)||(18470365-18470508)
chr3 (50-195)||(23662921-23663064)
chr3 (50-195)||(8886377-8886520)
chr3 (103-194)||(38206114-38206205)
chr3 (101-193)||(24755990-24756082)
chr3 (101-193)||(24764987-24765079)
chr3 (141-195)||(12967344-12967398)
chr3 (189-262)||(3686714-3686788)
chr3 (219-271)||(12967228-12967280)
chr3 (203-263)||(23662829-23662890)
chr3 (189-249)||(18470542-18470602)
chr3 (99-154)||(12114318-12114373)
chr3 (219-262)||(8886567-8886611)
[»] scaffold0045 (1 HSPs)
scaffold0045 (50-193)||(81500-81644)
[»] scaffold0070 (2 HSPs)
scaffold0070 (101-195)||(61790-61884)
scaffold0070 (101-195)||(65992-66086)
[»] chr7 (5 HSPs)
chr7 (99-187)||(10389876-10389964)
chr7 (87-195)||(21667746-21667853)
chr7 (140-195)||(30492779-30492834)
chr7 (102-186)||(15984696-15984779)
chr7 (224-268)||(21667931-21667974)
[»] chr6 (5 HSPs)
chr6 (70-176)||(12796289-12796393)
chr6 (197-262)||(16836236-16836302)
chr6 (151-195)||(16836344-16836388)
chr6 (142-184)||(15998134-15998176)
chr6 (126-188)||(17285353-17285415)
[»] scaffold0060 (1 HSPs)
scaffold0060 (141-184)||(49542-49585)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 16750404 - 16750145
Alignment:
Q  11 gtgagatgaagatagaagaggtggaaggatatatgtgacggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttac 110  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  16750404 gtgacatgaagataaaagagatggaaggatatatgtgacggatcttcttccagtgcataaactaagttcatactcttt-agcaattcttagctttcttac 16750306  T
Q  111 ctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtgtccccactcatgtcgtgctccca 210  Q
    ||| | |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16750305 ctccttgaggttcaataacatctagtacgatgttttcataactatttctgattactggaatgtgatcagatatagtgtccccactcatgtcgtgctccca 16750206  T
Q  211 ctagaactcccattattctttatttaaaggggtaaatatttacatagaaatcaacatcgtt 271  Q
    ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16750205 ctagagcccccactattctttatttaaaggggtaaatatttacatagaaatcaacatcgtt 16750145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 25853556 - 25853699
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| | ||||||| |||||||||||||||||||||||||    
T  25853556 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctccttgaggttctataacatctgatacgatgttttcat 25853653  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  25853654 aactatttctgattacatgaatgtgatcagatatagtgcccccact 25853699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 47453831 - 47453700
Alignment:
Q  51 gatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcata 150  Q
    ||||||||||||||| |||||||||||| ||||||||| ||| ||||  |||||||||||||| ||||||||| |||||||||  ||| |||||||||||    
T  47453831 gatcttcttccaatgtataaaccaagtttatactcttt-agctattcc-agctttcttacctcctcgaggttctataacatctagtacaatgttttcata 47453734  T
Q  151 actatttctgattactggaatgtgatcagatata 184  Q
    ||||||| ||||||||| |||||||| |||||||    
T  47453733 actatttttgattactgaaatgtgataagatata 47453700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 10138450 - 10138593
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||| ||||||||| ||| ||||| ||||||| | |||| || |||||| ||||||| || ||||||||||||||    
T  10138450 ggatattcttccaatgtataaaccgagtttatactcttt-agctattct-agctttcctgcctcctcaaggttctataacatttggtacgatgttttcat 10138547  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||| ||||||||||||||| |||||||    
T  10138548 aactatttctgattacatgaatatgatcagatatagtgcccccact 10138593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 11812139 - 11812235
Alignment:
Q  99 tagctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||| | ||||||| ||| ||||| ||||||| ||||||||||||||| || ||||| ||||||||||||||||| || |||||||    
T  11812139 tagctttcttacctctttgaggttctatatcatctcatacgatattttcataactatttatgtttactagaatgtgatcagatataatgcccccact 11812235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 47453643 - 47453573
Alignment:
Q  197 atgtcgtgctcccactagaactcccattattctttatttaaaggggtaaatatttacatagaaatcaacat 267  Q
    |||||| |||||||||||  | |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47453643 atgtcgcgctcccactagcgcccccactattctttatttaaaggggtaaatatttacatagaaatcaacat 47453573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 10138641 - 10138701
Alignment:
Q  203 tgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    ||||||||||||  | |||| ||||||||| ||||||||||||||||||||||||||||||    
T  10138641 tgctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatc 10138701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 25853732 - 25853791
Alignment:
Q  203 tgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaat 261  Q
    ||||||||||||  | |||| ||||||||| |||||||||||||| ||||||||||||||    
T  25853732 tgctcccactagtgcccccactattctttagtttaaaggggtaaagatttacatagaaat 25853791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 52 - 271
Target Start/End: Complemental strand, 25480482 - 25480253
Alignment:
Q  52 atcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcataa 151  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||| ||||| ||| |||||||||| ||||||||||||||||    
T  25480482 atcttcttccaatgtataaaccaagttcatactcttt-agctattct-agctttcttacctcttcgagattctataacatctggtacgatgttttcataa 25480385  T
Q  152 ctatttctgattactggaatgtgatcagatatagtgtccccactcatgtcgtgct------------cccactagaactcccattattctttatttaaag 239  Q
    |||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||            ||||||||  | |||| ||||||| | ||||||    
T  25480384 ctatttctgattacttaaatgtgatcagatatagtgcccccactaatgtcgtgctcttactagagcccccactagtgcccccactattcttaagttaaag 25480285  T
Q  240 gggtaaatatttacatagaaatcaacatcgtt 271  Q
    ||||||||||||||||| |||||||| |||||    
T  25480284 gggtaaatatttacatataaatcaacgtcgtt 25480253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 52 - 271
Target Start/End: Complemental strand, 25488088 - 25487859
Alignment:
Q  52 atcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcataa 151  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||| ||||| ||| |||||||||| ||||||||||||||||    
T  25488088 atcttcttccaatgtataaaccaagttcatactcttt-agctattct-agctttcttacctcttcgagattctataacatctggtacgatgttttcataa 25487991  T
Q  152 ctatttctgattactggaatgtgatcagatatagtgtccccactcatgtcgtgct------------cccactagaactcccattattctttatttaaag 239  Q
    |||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||            ||||||||  | |||| ||||||| | ||||||    
T  25487990 ctatttctgattacttaaatgtgatcagatatagtgcccccactaatgtcgtgctcttactagagcccccactagtgcccccactattcttaagttaaag 25487891  T
Q  240 gggtaaatatttacatagaaatcaacatcgtt 271  Q
    ||||||||||||||||| |||||||| |||||    
T  25487890 gggtaaatatttacatataaatcaacgtcgtt 25487859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 17972321 - 17972178
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  17972321 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcctcgaggttctataacatctggtacgatgttttcat 17972224  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  17972223 aactatttctgattacacgaatgtgatcagatatagtgcccccact 17972178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 30649340 - 30649483
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  30649340 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcctcgaggttctataacatctggtacgatgttttcat 30649437  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  30649438 aactatttctgattacatgaatgtgatcagatatagtgcccccact 30649483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 30654039 - 30654182
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  30654039 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcctcgaggttctataacatctggtacgatgttttcat 30654136  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  30654137 aactatttctgattacacgaatgtgatcagatatagtgcccccact 30654182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 9182366 - 9182223
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| ||||||||| |||||||||| || ||| |||||||    
T  9182366 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcctcgaggttctataacatctggtatgatattttcat 9182269  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  9182268 aactatttctgattacatgaatgtgatcagatatagtgcccccact 9182223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 30649517 - 30649591
Alignment:
Q  189 ccccactcatgtcgtgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    ||||||| ||||||||||||||||||  | |||| ||||||||| ||||||||||||||||||||||||||||||    
T  30649517 ccccactaatgtcgtgctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatc 30649591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 28450439 - 28450497
Alignment:
Q  137 acgatgttttcataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  28450439 acgatattttcataactatttctgattaatggaatgtgatcatatatagtgcccccact 28450497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 30616168 - 30616222
Alignment:
Q  127 aacatctgatacgatgttttcataactatttctgattactggaatgtgatcagat 181  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  30616168 aacatctcctacgatgttttcataactatttctgattactcgaatgtgatcagat 30616222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 27417799 - 27417694
Alignment:
Q  87 tttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacg------atgttttcataactatttctgattactggaatgtgatcaga 180  Q
    |||||||||||||  |||||||||||| | ||||||| |||||||||||||||      ||||||| ||||||||||||||||||  ||| |||||||||    
T  27417799 tttagcaattcttc-ctttcttacctccttgaggttctataacatctgatacgcgtacaatgtttttataactatttctgattacgcgaacgtgatcaga 27417701  T
Q  181 tatagtg 187  Q
    | |||||    
T  27417700 tgtagtg 27417694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 17972126 - 17972082
Alignment:
Q  219 cccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||    
T  17972126 cccactattctttagtttcaaggggtaaatatttacatagaaatc 17972082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 30654229 - 30654273
Alignment:
Q  219 cccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||    
T  30654229 cccactattctttagtttcaaggggtaaatatttacatagaaatc 30654273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 4239976 - 4239833
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  4239976 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcctcgaggttctataacatctggtacgatgttttcat 4239879  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  4239878 aactatttctgattacacgaatgtgatcagatatagtgcccccact 4239833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 23083531 - 23083388
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  23083531 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcctcgaggttctataacatctggtacgatgttttcat 23083434  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||  |||||||    
T  23083433 aactatttctgattacatgaatgtgatcagatatagttcccccact 23083388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 17023382 - 17023528
Alignment:
Q  50 ggatcttcttccaatgcataaacca--ag-ttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgtttt 146  Q
    |||||||||||||||| ||||||||  || |||||||||||| | ||||| || ||||||||||||| ||||||||| |||||||||  ||| |||||||    
T  17023382 ggatcttcttccaatgtataaaccataagattcatactctttaa-caattatt-gctttcttacctcttcgaggttctataacatcttgtacaatgtttt 17023479  T
Q  147 cataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17023480 cataactatttctgattactggaatgtgatcagatatagtgcccccact 17023528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 17553875 - 17554021
Alignment:
Q  50 ggatcttcttccaatgcataaacca--ag-ttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgtttt 146  Q
    |||||||||||||||| ||||||||  || |||||||||||| | ||||| || ||||||||||||| ||||||||| |||||||||  ||| |||||||    
T  17553875 ggatcttcttccaatgtataaaccataagattcatactctttaa-caattatt-gctttcttacctcttcgaggttctataacatcttgtacaatgtttt 17553972  T
Q  147 cataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17553973 cataactatttctgattactggaatgtgatcagatatagtgcccccact 17554021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 40127541 - 40127398
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||  |||||||||||||| ||| ||||| ||||||| |||||| || |||||| |||||||||| ||||||||||||||    
T  40127541 ggatattcttccaatgtataaactgagttcatactcttt-agctattct-agctttcctacctcctcaaggttctataacatctggtacgatgttttcat 40127444  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  40127443 aactatttctgattacatgaatgtgatcagatatagtgcccccact 40127398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 38184243 - 38184105
Alignment:
Q  50 ggatcttcttccaatgcataaacca---agttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgtttt 146  Q
    |||||||||||||||| ||||||||   |||||||||||||| | ||||||||  |||||||| ||  ||||||||| |||||||||  ||||||| |||    
T  38184243 ggatcttcttccaatgtataaaccataaagttcatactcttt-atcaattcttt-ctttcttagcttttcgaggttctataacatctcgtacgatgattt 38184146  T
Q  147 cataactatttctgattactggaatgtgatcagatatagtg 187  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38184145 cataactatttctgattactggaatgtgatcagatatagtg 38184105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 8320279 - 8320133
Alignment:
Q  50 ggatcttcttccaatgcataaaccaa---gttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgtttt 146  Q
    |||||||||||||| | ||||||||    ||||||||||||| |||| ||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||    
T  8320279 ggatcttcttccaacgtataaaccataaggttcatactcttt-agcagttctt-gctttcttacctcttcgaggttctataacatctcatatgatgtttt 8320182  T
Q  147 cataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
     |||||||||| ||||||||  ||||||||||||||||||| |||||||    
T  8320181 tataactatttatgattactcaaatgtgatcagatatagtgcccccact 8320133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 25369333 - 25369239
Alignment:
Q  101 gctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||| ||||||||| ||||||||  ||| ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  25369333 gctttcttacctcttcgaggttctataacatcacatatgatgttttcataactatttctgattactcaaatgtgatcagatatagtgcccccact 25369239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 34116962 - 34117040
Alignment:
Q  189 ccccactcatgtcgtgctcccactagaactcccattattctttatttaaaggggtaaatatttacatagaaatcaacatc 268  Q
    ||||||| |||||||||||||||| ||   |||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  34116962 ccccactaatgtcgtgctcccact-gacgccccagtattctttatttaaaggggtaaatatgtacatagaaatcaacatc 34117040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 17023559 - 17023641
Alignment:
Q  186 tgtccccactcatgtcgtgctcccactagaactcccattattctttatttaaaggggtaaatatttacatagaaatcaacatc 268  Q
    |||||| ||| ||||||||  ||||||||  | |||| ||||||||| |||||||||||||||||| ||||||||||| ||||    
T  17023559 tgtccctactaatgtcgtgaacccactagcgcccccactattctttagttaaaggggtaaatattttcatagaaatcagcatc 17023641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 17554052 - 17554134
Alignment:
Q  186 tgtccccactcatgtcgtgctcccactagaactcccattattctttatttaaaggggtaaatatttacatagaaatcaacatc 268  Q
    |||||| ||| ||||||||  ||||||||  | |||| ||||||||| |||||||||||||||||| ||||||||||| ||||    
T  17554052 tgtccctactaatgtcgtgaacccactagcgcccccactattctttagttaaaggggtaaatattttcatagaaatcagcatc 17554134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 40127364 - 40127290
Alignment:
Q  189 ccccactcatgtcgtgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    ||||||| ||||||||||||| ||||  | |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  40127364 ccccactaatgtcgtgctcccgctagtgcccccactattctttagtttaaaggggtaaatatttacattgaaatc 40127290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 38184063 - 38184014
Alignment:
Q  219 cccattattctttatttaaaggggtaaatatttacatagaaatcaacatc 268  Q
    |||| ||||||||| |||||| |||||||||||||||||||||| |||||    
T  38184063 cccactattctttagttaaagaggtaaatatttacatagaaatcgacatc 38184014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 4239781 - 4239737
Alignment:
Q  219 cccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||    
T  4239781 cccactattctttagtttcaaggggtaaatatttacatagaaatc 4239737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 36939160 - 36939017
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  36939160 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcctcgaggttctataacatctggtacgatgttttcat 36939063  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  36939062 aactatttctgattacacgaatgtgatcagatatagtgcccccact 36939017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 39521578 - 39521721
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||  |||||||||||||| ||| ||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  39521578 ggatattcttccaatgtataaactgagttcatactcttt-agctattct-agctttcctacctcctcgaggttctataacatctggtacgatgttttcat 39521675  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  39521676 aactatttctgattacatgaatgtgatcagatatagtgcccccact 39521721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 36426792 - 36426935
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  36426792 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcctcgaggttctataacatctggtacgatgttttcat 36426889  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    |||||||| |||||||  ||||||||||| |||||||| |||||||    
T  36426890 aactatttatgattacatgaatgtgatcaaatatagtgcccccact 36426935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 559917 - 560060
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| |||||| |||| ||||||  |||||||||||||| ||| ||||| ||||||| |||||| || |||||| |||||||||| ||||||||||||||    
T  559917 ggatattcttcaaatgtataaactgagttcatactcttt-agctattct-agctttcctacctcctcaaggttctataacatctggtacgatgttttcat 560014  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  560015 aactatttctgattacacgaatgtgatcagatatagtgcccccact 560060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 26670426 - 26670572
Alignment:
Q  50 ggatcttcttccaatgcataaacca--ag-ttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgtttt 146  Q
    |||| ||||||||||| ||||||||  || |||||||||||| | |||| ||| | ||||||||||| ||||||||| |||||||||| |||||||||||    
T  26670426 ggatattcttccaatgtataaaccataagattcatactctttaa-caatgctt-gttttcttacctcttcgaggttctataacatctggtacgatgtttt 26670523  T
Q  147 cataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||||    
T  26670524 cataactatttctgattacatgaatgtgatcagatatagtgcccccact 26670572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 26942023 - 26942169
Alignment:
Q  50 ggatcttcttccaatgcataaacca--ag-ttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgtttt 146  Q
    |||| ||||||||||| ||||||||  || |||||||||||| | |||| ||| | ||||||||||| ||||||||| |||||||||| |||||||||||    
T  26942023 ggatattcttccaatgtataaaccataagattcatactctttaa-caatgctt-gttttcttacctcttcgaggttctataacatctggtacgatgtttt 26942120  T
Q  147 cataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||||    
T  26942121 cataactatttctgattacatgaatgtgatcagatatagtgcccccact 26942169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 41999856 - 41999999
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| |||||||  |||||| |||||| ||| ||||| ||||||| |||||| ||| ||||| |||||||||| ||| ||||||||||    
T  41999856 ggatattcttccaatgtataaaccgtgttcatgctcttt-agctattct-agctttcctacctcctcgtggttctataacatctggtacaatgttttcat 41999953  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  ||| |||||||||||||||| |||||||    
T  41999954 aactatttctgattacatgaaagtgatcagatatagtgcccccact 41999999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 9911792 - 9911915
Alignment:
Q  70 aaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactgga 169  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| || | |||| ||||||||| ||  ||||||||| ||||||||| |||||||| ||    
T  9911792 aaccaagttcatactcttt-agcaattct-agctttcttacctcttcaaagttctataacatctcatttgatgttttcgtaactatttatgattacttga 9911889  T
Q  170 atgtgatcagatatagtgtccccact 195  Q
    |||||||||||| ||||| |||||||    
T  9911890 atgtgatcagatgtagtgcccccact 9911915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 42000033 - 42000107
Alignment:
Q  189 ccccactcatgtcgtgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    ||||||| ||||||||||||||||||  | |||| ||||||||| ||||||||||||||||||||||||||||||    
T  42000033 ccccactaatgtcgtgctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatc 42000107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 26670614 - 26670680
Alignment:
Q  197 atgtcgtgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    |||| |||||||||||||  | |||| ||||||||| ||||||||||||||||||||||||||||||    
T  26670614 atgttgtgctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatc 26670680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 26942211 - 26942277
Alignment:
Q  197 atgtcgtgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    |||| |||||||||||||  | |||| ||||||||| ||||||||||||||||||||||||||||||    
T  26942211 atgttgtgctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatc 26942277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 36938983 - 36938909
Alignment:
Q  189 ccccactcatgtcgtgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    ||||||| ||||||||||||||||||  | |||| ||||||||| |||  |||||||||||||||||||||||||    
T  36938983 ccccactaatgtcgtgctcccactagtgcccccactattctttagtttcgaggggtaaatatttacatagaaatc 36938909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 39521763 - 39521829
Alignment:
Q  197 atgtcgtgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    |||| |||||||||||||  | |||| ||||||||| ||||||||||||||||||||||||||||||    
T  39521763 atgttgtgctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatc 39521829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 36426977 - 36427050
Alignment:
Q  197 atgtcgtgctcccactagaactcccattattctttatttaaaggggtaa--atatttacatagaaatcaacatc 268  Q
    |||| |||||||||||||  | |||| ||||||||| ||||||||||||  |||||| |||||||||| |||||    
T  36426977 atgttgtgctcccactagtgcccccactattctttagttaaaggggtaaatatatttccatagaaatcgacatc 36427050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 560107 - 560151
Alignment:
Q  219 cccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||    
T  560107 cccactattctttagtttcaaggggtaaatatttacatagaaatc 560151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 33466000 - 33465857
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||| ||||  ||| |||||||||  ||||||||||||||    
T  33466000 ggatattcttccaatgtataaaccaagttcatactctttaa-caattctt-gctttcttacctcttcgaatttctataacatctcgtacgatgttttcat 33465903  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||    
T  33465902 aactatttctgattattggaatgtgatcagatatagtgcccccact 33465857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 195
Target Start/End: Complemental strand, 37261505 - 37261367
Alignment:
Q  55 ttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcataacta 154  Q
    ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||    
T  37261505 ttcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcatcaaggttctataacatctggtacgatgttttcataacta 37261408  T
Q  155 tttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    |||||||||||  |||| ||||||||||||||| |||||||    
T  37261407 tttctgattacatgaatatgatcagatatagtgcccccact 37261367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 31271921 - 31272064
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| ||||||||| |||||| |||||||||  ||||||||||||||    
T  31271921 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcatcaaggttctataacatctagtacgatgttttcat 31272018  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    |||||||| |||||||  |||| ||||||||||||||| |||||||    
T  31272019 aactatttttgattacatgaatatgatcagatatagtgcccccact 31272064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 12877498 - 12877613
Alignment:
Q  70 aaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactgga 169  Q
    |||||||||||||||| || ||||||||| |||||||||||||| | ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  12877498 aaccaagttcatactcatt-agcaattct-agctttcttacctctttgaggttctataacatctcatatgatgttttcataactatttctgattactgga 12877595  T
Q  170 atgtgatcagatatagtg 187  Q
    || |||||||||| ||||    
T  12877596 atctgatcagatacagtg 12877613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 39318870 - 39318946
Alignment:
Q  119 ggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||| |||||||||  || |||||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  39318870 ggttctataacatctcgtatgatgttttcataactatttctgattactagaatgtgatcagatatagttcccccact 39318946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 32222624 - 32222572
Alignment:
Q  219 cccattattctttatttaaaggggtaaatatttacatagaaatcaacatcgtt 271  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  32222624 cccactattctttatttaaaggggtaaatatttacatataaatcgacatcgtt 32222572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 19105180 - 19105279
Alignment:
Q  50 ggatcttcttccaatgcataaaccaa---gttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgtttt 146  Q
    |||||||||||||||| ||||| ||    || |||||||||| |||||||||| ||||||||||||| ||||||||| |||||||||  |||||||||||    
T  19105180 ggatcttcttccaatgtataaagcataaggtccatactcttt-agcaattctt-gctttcttacctcttcgaggttctataacatcttgtacgatgtttt 19105277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 19105343 - 19105421
Alignment:
Q  189 ccccactcatgtcgtgctcccactagaactcccattattctttatttaaaggggtaaatatttacatagaaatcaacatc 268  Q
    ||||||| || |||||||||||||||  | |||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  19105343 ccccactaatttcgtgctcccactagtgc-cccactattctttagttaaaggattaaatatttacatagaaatcaacatc 19105421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 31272095 - 31272156
Alignment:
Q  203 tgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatca 263  Q
    ||||||||||||  | |||| ||||||||| |||||||||||||||||||||||||||||||    
T  31272095 tgctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatca 31272156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 15134828 - 15134776
Alignment:
Q  219 cccattattctttatttaaaggggtaaatatttacatagaaatcaacatcgtt 271  Q
    |||| |||| ||||||||||||||||  |||||||||||||||| ||||||||    
T  15134828 cccactattatttatttaaaggggtatttatttacatagaaatcgacatcgtt 15134776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 37261336 - 37261277
Alignment:
Q  203 tgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaat 261  Q
    ||||||||||||  | |||  ||||||||| |||||||||||||||||||||||||||||    
T  37261336 tgctcccactagtgcccccgctattctttagtttaaaggggtaaatatttacatagaaat 37261277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 41815294 - 41815328
Alignment:
Q  138 cgatgttttcataactatttctgattactggaatg 172  Q
    |||||||||||||||||||||||||||||| ||||    
T  41815294 cgatgttttcataactatttctgattactgaaatg 41815328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 3686537 - 3686680
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  3686537 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcctcgaggttctataacatctggtacgatgttttcat 3686634  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  3686635 aactatttctgattacacgaatgtgatcagatatagtgcccccact 3686680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 18470365 - 18470508
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| |||| |  |||||||||||||| ||| ||||| ||||||| |||||| | ||||||| |||||||||| ||||||||||||||    
T  18470365 ggatattcttccaatgtataatctgagttcatactcttt-agctattct-agctttcctacctccttgaggttctataacatctggtacgatgttttcat 18470462  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  18470463 aactatttctgattacatgaatgtgatcagatatagtgcccccact 18470508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 23663064 - 23662921
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| ||||||||| |||||| |||||||||  ||||||||||||||    
T  23663064 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcatcaaggttctataacatctagtacgatgttttcat 23662967  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    |||||||| |||||||  |||| ||||||||||||||| |||||||    
T  23662966 aactatttttgattacatgaatatgatcagatatagtgcccccact 23662921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 8886377 - 8886520
Alignment:
Q  50 ggatcttcttccaatgcataaaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcat 149  Q
    |||| ||||||||||| ||||||| |||||||||||||| ||| ||||| ||||||| |||||| ||| ||||| |||||||||| ||| ||||||||||    
T  8886377 ggatattcttccaatgtataaaccgagttcatactcttt-agctattct-agctttcctacctcctcgtggttctataacatctggtacaatgttttcat 8886474  T
Q  150 aactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    |||||||| |||||||  ||| |||||||||||||||| |||||||    
T  8886475 aactatttatgattacatgaaagtgatcagatatagtgcccccact 8886520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 38206205 - 38206114
Alignment:
Q  103 tttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtgtccccac 194  Q
    ||||||||||| | ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  38206205 tttcttacctctttgaggttctataacatcttgtacgatgttttcataactatttctgattactggaatgtgatcaaatgtagtgcccccac 38206114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 24756082 - 24755990
Alignment:
Q  101 gctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtgtcccca 193  Q
    ||||||||||||| ||||||||| ||||||||   || ||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  24756082 gctttcttacctcttcgaggttctataacatcacgtatgatgttttcataactatttctgattactgaaatgtgatcagatatactgccccca 24755990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 24765079 - 24764987
Alignment:
Q  101 gctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtgtcccca 193  Q
    ||||||||||||| ||||||||| ||||||||   || ||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  24765079 gctttcttacctcttcgaggttctataacatcacgtatgatgttttcataactatttctgattactgaaatgtgatcagatatactgccccca 24764987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 12967398 - 12967344
Alignment:
Q  141 tgttttcataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  12967398 tgttttcataactatttatgattactggaatgtgatcagatatagtgcccccact 12967344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 3686714 - 3686788
Alignment:
Q  189 ccccactcatgtcgtgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    ||||||| ||||||||||||||||||  | |||| ||||||||| ||| ||||||||||||||||||||||||||    
T  3686714 ccccactaatgtcgtgctcccactagtgcccccactattctttagtttcaaggggtaaatatttacatagaaatc 3686788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 12967280 - 12967228
Alignment:
Q  219 cccattattctttatttaaaggggtaaatatttacatagaaatcaacatcgtt 271  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  12967280 cccactattctttatttaaatgggtaaatatttatatagaaatcaacatcgtt 12967228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 23662890 - 23662829
Alignment:
Q  203 tgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatca 263  Q
    ||||||||||||  | |||| ||||||||| |||||||||||||||||||||||||||||||    
T  23662890 tgctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatca 23662829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 18470542 - 18470602
Alignment:
Q  189 ccccactcatgtcgtgctcccactagaactcccattattctttatttaaaggggtaaatat 249  Q
    ||||||| ||||||||||||||||||  | |||| ||||||||| ||||||||||||||||    
T  18470542 ccccactaatgtcgtgctcccactagtgcccccactattctttagttaaaggggtaaatat 18470602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 12114373 - 12114318
Alignment:
Q  99 tagctttcttacctcatcgaggttcaataacatctgatacgatgttttcataacta 154  Q
    ||||||| ||||||| | ||||||| ||||||||| ||||||| ||||||||||||    
T  12114373 tagctttattacctctttgaggttctataacatctcatacgatattttcataacta 12114318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 8886567 - 8886611
Alignment:
Q  219 cccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||    
T  8886567 cccactattctttagtttcaaggggtaaatatttacatagaaatc 8886611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 81500 - 81644
Alignment:
Q  50 ggatcttcttccaatgcataaaccaa---gttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgtttt 146  Q
    |||||||||||||||| ||||||||    || |||||||||| |||||||||| ||||||||||||| ||||||||| |||||||||  ||| |||||||    
T  81500 ggatcttcttccaatgtataaaccacaaggtccatactcttt-agcaattctt-gctttcttacctcttcgaggttctataacatctcgtacaatgtttt 81597  T
Q  147 cataactatttctgattactggaatgtgatcagatatagtgtcccca 193  Q
    ||||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  81598 cataactatttctaattactgaaatatgatcagatataatgtcccca 81644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 61790 - 61884
Alignment:
Q  101 gctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||| ||||||||| ||||||||  ||| ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  61790 gctttcttacctcttcgaggttctataacatcacatatgatgttttcataactatttctgattactcaaatgtgatcagatatagtgcccccact 61884  T

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Target: scaffold0070; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 65992 - 66086
Alignment:
Q  101 gctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    ||||||||||||| ||||||||| ||||||||   || ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  65992 gctttcttacctcttcgaggttctataacatcacgtatgatgttttcataactatttctgattactcaaatgtgatcagatatagtgcccccact 66086  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 10389964 - 10389876
Alignment:
Q  99 tagctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtg 187  Q
    ||||||||||||||| | ||||||| ||||||||| |||||||||||  ||||||||||||||||||||||| ||||| ||||||||||    
T  10389964 tagctttcttacctctttgaggttctataacatcttatacgatgtttagataactatttctgattactggaaagtgattagatatagtg 10389876  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 21667746 - 21667853
Alignment:
Q  87 tttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagt 186  Q
    |||||||||||||| ||||| ||| || ||||||||| |||||||||  ||| ||||  ||||||||||||||||||| || ||||||||||||||| ||    
T  21667746 tttagcaattctta-ctttcgtacttcttcgaggttctataacatctcgtacaatgtactcataactatttctgattattgaaatgtgatcagatattgt 21667844  T
Q  187 gtccccact 195  Q
    | |||||||    
T  21667845 gcccccact 21667853  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 30492779 - 30492834
Alignment:
Q  140 atgttttcataactatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    |||||||||| ||||||||||||||||||| |||||| |||  |||||||||||||    
T  30492779 atgttttcatcactatttctgattactggagtgtgattagaggtagtgtccccact 30492834  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 15984696 - 15984779
Alignment:
Q  102 ctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagt 186  Q
    |||||||||||  || |||||| ||||||||| ||||| ||||| ||||||||||| | ||||||  |||||||| |||||||||    
T  15984696 ctttcttaccttttcaaggttctataacatctcatacgttgttt-cataactattttttattactataatgtgataagatatagt 15984779  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 21667931 - 21667974
Alignment:
Q  224 tattctttatttaaaggggtaaatatttacatagaaatcaacatc 268  Q
    |||||||||||||| |||||||||||||||||||||||| |||||    
T  21667931 tattctttatttaa-ggggtaaatatttacatagaaatcgacatc 21667974  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 12796393 - 12796289
Alignment:
Q  70 aaccaagttcatactcttttagcaattcttagctttcttacctcatcgaggttcaataacatctgatacgatgttttcataactatttctgattactgga 169  Q
    ||||||||||||||||||| | ||||||||  |||||||||||| | ||||||| |||||||||  ||||||| ||||||||||||||||||||||| ||    
T  12796393 aaccaagttcatactctttaa-caattcttt-ctttcttacctctttgaggttctataacatctcctacgatgctttcataactatttctgattactcga 12796296  T
Q  170 atgtgat 176  Q
    |||||||    
T  12796295 atgtgat 12796289  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 16836302 - 16836236
Alignment:
Q  197 atgtcgtgctcccactagaactcccattattcttta-tttaaaggggtaaatatttacatagaaatc 262  Q
    |||| |||||||||||||  | |||| ||||||||| ||||||||||||||||||||||||||||||    
T  16836302 atgttgtgctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatc 16836236  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 16836388 - 16836344
Alignment:
Q  151 actatttctgattactggaatgtgatcagatatagtgtccccact 195  Q
    |||||||||||||||  |||||||||||||||||||| |||||||    
T  16836388 actatttctgattacatgaatgtgatcagatatagtgcccccact 16836344  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 15998176 - 15998134
Alignment:
Q  142 gttttcataactatttctgattactggaatgtgatcagatata 184  Q
    |||||||||  |||||||||||| |||||||||||||||||||    
T  15998176 gttttcatacttatttctgattattggaatgtgatcagatata 15998134  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 17285415 - 17285353
Alignment:
Q  126 taacatctgatacgatgttttcataactatttctgattactggaatgtgatcagatatagtgt 188  Q
    |||||| || || ||||||||||| ||||| ||||||||||||| ||||||||| | ||||||    
T  17285415 taacatttgttatgatgttttcatcactatctctgattactggagtgtgatcaggtgtagtgt 17285353  T

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Target: scaffold0060 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 49585 - 49542
Alignment:
Q  141 tgttttcataactatttctgattactggaatgtgatcagatata 184  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  49585 tgttttcataactatttctgattactgaaatgtgatcagatata 49542  T

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