View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16817_low_57 (Length: 271)
Name: NF16817_low_57
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_57 |
 | |
|
| [»] scaffold0070 (2 HSPs) |
| | |
|
| [»] scaffold0746 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 22)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 260
Target Start/End: Complemental strand, 25380061 - 25379804
Alignment:
| Q |
3 |
attacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatagag |
102 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25380061 |
attacttcagacccatatgatatgttggctaataattggtcaacctcctcttctgtatgcaattgggttggtgtaacttgtgatgagcgacacaatagag |
25379962 |
T |
|
| Q |
103 |
tccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaatag |
202 |
Q |
| |
|
|||| |||||||| || | |||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
25379961 |
tccatagtttgatcctccaaaacatgagtcttagaggtaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctaaaaaataatag |
25379862 |
T |
|
| Q |
203 |
cttcggtggtcagtttcctaaagagttatgccagttgcatagattaaagattcttcat |
260 |
Q |
| |
|
|||||||||||||||||||| ||| |||| | ||||| |||||||| |||||||| |
|
|
| T |
25379861 |
cttcggtggtcagtttcctacggaggtatgtcggttgcgccgattaaaggttcttcat |
25379804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 260
Target Start/End: Complemental strand, 25331441 - 25331184
Alignment:
| Q |
3 |
attacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatagag |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||| || ||||| |
|
|
| T |
25331441 |
attacttcagacccctatgatatgttgtctaataattggtcaacatcctcttctgtatgtaattgggctggtgtaacttgtgatgagcggcatggtagag |
25331342 |
T |
|
| Q |
103 |
tccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaatag |
202 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
25331341 |
tccacagtttgattctccaaaacatgagtcttagaggcaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctaaaaaataatag |
25331242 |
T |
|
| Q |
203 |
cttcggtggtcagtttcctaaagagttatgccagttgcatagattaaagattcttcat |
260 |
Q |
| |
|
|||||||||||||||||||| |||| |||| | ||||| |||||||| |||||||| |
|
|
| T |
25331241 |
cttcggtggtcagtttcctacagaggtatgtcggttgcgccgattaaaggttcttcat |
25331184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 25731051 - 25730792
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
25731051 |
taattacttcagacccttatgatgtgttggctaataattggtcaacttcctcttctgtatgcaattgggttggtgtaacttgtgatgagcgacacggtag |
25730952 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| ||| |
|
|
| T |
25730951 |
agtccacagtttgattctcctaaatatgtgtcttagaggtaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctcaaaaacaat |
25730852 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagagttatgccagttgcatagattaaagattcttcat |
260 |
Q |
| |
|
||||||||||||||| |||||| |||||||| | ||||| ||||||||||||||||| |
|
|
| T |
25730851 |
agcttcggtggtcagcttcctacagagttatttcggttgcgccgattaaagattcttcat |
25730792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 3 - 260
Target Start/End: Complemental strand, 25470218 - 25469961
Alignment:
| Q |
3 |
attacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatagag |
102 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
25470218 |
attacttcagacccttatgatatcttgtctaagaattggtcaacctcctcttctgtatgcaattgggttggtgtaacttgtgatgagcgacacggaagag |
25470119 |
T |
|
| Q |
103 |
tccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaatag |
202 |
Q |
| |
|
||| ||||||||||| |||||||||||||||| ||| |||||||| |||||||||| |||||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
25470118 |
tccgtagtttgattctccgaaacatgagtcttaaaggtaccgtttctccaaacttggggaatctgtcatttcttgttatacttgacctaaaaaataatag |
25470019 |
T |
|
| Q |
203 |
cttcggtggtcagtttcctaaagagttatgccagttgcatagattaaagattcttcat |
260 |
Q |
| |
|
||||||||||||||||| || |||| |||| | ||||| |||||||| |||||||| |
|
|
| T |
25470018 |
cttcggtggtcagtttcttacagaggtatgtcggttgcgccgattaaaggttcttcat |
25469961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 25711228 - 25710969
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| ||||| ||| ||| |
|
|
| T |
25711228 |
taattacttcagacccttatgatatgttgtctaataattggtcaactgcatcttctgtatgcaattgggttggtgtaacttgtgacgagcgtcacggtag |
25711129 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||||| ||||||||||| | ||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| ||| |
|
|
| T |
25711128 |
agtccaaagtttgattctccaaaatatgagtcttagaggtaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctcaaaaacaat |
25711029 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagagttatgccagttgcatagattaaagattcttcat |
260 |
Q |
| |
|
||||||||||||||| |||||| |||||||| | ||||| ||||||||||||||||| |
|
|
| T |
25711028 |
agcttcggtggtcagcttcctacagagttatatcggttgcgccgattaaagattcttcat |
25710969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 25433819 - 25433588
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||| ||| ||| |
|
|
| T |
25433819 |
taattacttcagacccttatgatgtgttggctaataattggtcaacctcatcttccgtatgcaattggattggtgtaacttgtgatgagcggcacggtag |
25433720 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
||| |||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||| |
|
|
| T |
25433719 |
agttcacagtttgattctccgaaacatgagtcaaggaggtaccgtttccccaaacttggggaatctgtccttccttgttatacttgacctaaaaaacaat |
25433620 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagagttatg |
232 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
25433619 |
agattcggtggtcagtttcctaaagagttatg |
25433588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 25688589 - 25688330
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||||||||| || |
|
|
| T |
25688589 |
taattacttcagacccctatgatatgttggctaataattggtcaacatcctcttctgtatgtagttgggttggtgtaacttgtgatgagcgacacggaag |
25688490 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||||| ||||| ||||| | |||||||||||||||||| | |||||||||||||||| |||| | ||||| || |||||||||||||| |||| ||| |
|
|
| T |
25688489 |
agtccatagtttaattctccaaaacatgagtcttagaggtattgtttccccaaacttggggaatatgtccttcctagttatacttgacctcaaaaacaat |
25688390 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagagttatgccagttgcatagattaaagattcttcat |
260 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||| | ||||| | |||||||| |
|
|
| T |
25688389 |
agcttcagtggtcagtttcctaaagagttatgccggttgcacaaattaagggttcttcat |
25688330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 25599628 - 25599370
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||| |
|
|
| T |
25599628 |
taattacttcagacccctatgatatgttggctaataattggtcaacctcctcttctgtatgcacttgggctggtgtaacttgtgatgagcgacatggtag |
25599529 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||| | | |||| | || || |||||||| |||||||| |||| |||| |
|
|
| T |
25599528 |
agtccatagtttgattctccgagacatgagtcttagaggtaccgtttccccaaacatagggaatttgtcattccttgttatgcttgaccttaaaaataat |
25599429 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagagttatgccagttgcatagattaaagattcttca |
259 |
Q |
| |
|
||||||||||||||||||| || ||||||||| | |||| |||||||||||||||| |
|
|
| T |
25599428 |
agcttcggtggtcagtttcttagagagttatgtcgcttgcgccgattaaagattcttca |
25599370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 25408131 - 25407902
Alignment:
| Q |
3 |
attacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatagag |
102 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25408131 |
attacttcagacccttatgatatcttgtctaagaattggtcaacctcctcttttgtatgcaattgggttggtgtcacttgtgatgagcgacacggaagag |
25408032 |
T |
|
| Q |
103 |
tccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaatag |
202 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||| | ||||||||||||||| | |||| | |||||| |||||||||||||| |||||| |||||| |
|
|
| T |
25408031 |
tccatagtttgattctccgaaacatgagtcttaaaggtatcgtttccccaaacttagggaatttgtccttttttgttatacttgacataaaaaataatag |
25407932 |
T |
|
| Q |
203 |
cttcggtggtcagtttcctaaagagttatg |
232 |
Q |
| |
|
||| |||||||||||||||| |||| |||| |
|
|
| T |
25407931 |
ctttggtggtcagtttcctatagaggtatg |
25407902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 25486252 - 25485997
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| || |
|
|
| T |
25486252 |
taattacttcagacccctatgatatgttggctaataattggtcaacctcctcttctgtgtgcagttgggttggtgtcacttgtgatgagcgtcacggaag |
25486153 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
||| | ||||||||||| |||||||||||||||||||| || ||||||||||| || | |||| | ||||||||||||||||||||||| |||| ||| |
|
|
| T |
25486152 |
agtatatagtttgattctccgaaacatgagtcttagaggtactgtttccccaaatttagggaatatgtcctttcttgttatacttgacctcaaaaacaat |
25486053 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagagttatgccagttgcatagattaaagattct |
256 |
Q |
| |
|
|| ||||||||||| |||||| |||||||||| | ||||| | |||||||| |||| |
|
|
| T |
25486052 |
agtttcggtggtcaatttcctcaagagttatgtcggttgcgtcgattaaaggttct |
25485997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25428663 - 25428437
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| || |
|
|
| T |
25428663 |
taattacttcagacccctatgatatgttgtctaataattggtcaacatcctcttctgtatgcacttgggttggtgtcacttgcgatgagcgacacaacag |
25428564 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||| || |||||||||||| ||| |||| | || || |||||||||||| | || | ||| |
|
|
| T |
25428563 |
agtccatagtttgattctccgaaacatgagtcttagaggtactgtttccccaaacctggggaatttgtcgttccttgttatacttaatctctcccgcaat |
25428464 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagag |
227 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
25428463 |
agcttcagtggtcagtttcctaaagag |
25428437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 24916925 - 24917155
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| ||| |
|
|
| T |
24916925 |
taattacttcagacccctatggtacgttggctaataattggtcaacctcctcttccgtatgcacttgggttggtgtaacttgtgatgagcgacacggtag |
24917024 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
||| | ||||||||||| ||| |||||| ||||||||| ||||||||||||||||||| |||| | ||||| ||||||||||||||||| |||| ||| |
|
|
| T |
24917025 |
agtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttatacttgacctcaaaaacaat |
24917123 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagagttatg |
232 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |
|
|
| T |
24917124 |
agcttcggtggtcagcttcctacagagttatg |
24917155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25826089 - 25825863
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| || |
|
|
| T |
25826089 |
taattacttcagacccctatgatatgttgtctaataattggtcaacatcctcttctgtatgcacttgggttggtgtcgcttgtgatgagcgacacaacag |
25825990 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||||| ||||||| ||| | |||||||||||||||||| | |||||||||||| ||| |||| | || || |||||||||||| |||| || ||| |
|
|
| T |
25825989 |
agtccatagtttgaatctccaaaacatgagtcttagaggtattgtttccccaaacctggggaatttgtcgttccttgttatacttaacctctccagcaat |
25825890 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagag |
227 |
Q |
| |
|
|| ||| ||||||||||||||||||| |
|
|
| T |
25825889 |
agattcaatggtcagtttcctaaagag |
25825863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24890210 - 24890436
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
24890210 |
taattacttcagacccctatgatatgttgtctaataattggtcaacatcctctcctgtatgcacttgggttggtgtcacttgtgatgagcgacacaacag |
24890309 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||||| ||||||| ||| | ||||||||||||||||| | |||||||||||| ||| |||| | || || |||||||||||| |||| || ||| |
|
|
| T |
24890310 |
agtccatagtttgaatctccataacatgagtcttagaggtattgtttccccaaacctggggaatttgtcgttccttgttatacttaacctctccagcaat |
24890409 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagag |
227 |
Q |
| |
|
|||||| |||||||||| |||||||| |
|
|
| T |
24890410 |
agcttcaatggtcagttttctaaagag |
24890436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25501402 - 25501176
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
25501402 |
taattacttcagacccctatgatatgttgtctaataattggtcaacatcctctcatgtatgcacttgggttggtgtcacttgtgatgagcgacacaacag |
25501303 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||||| ||||||| ||| | ||||||||||||||||| | |||||||||||| ||| |||| | || || |||||||||||| |||| || ||| |
|
|
| T |
25501302 |
agtccatagtttgaatctccataacatgagtcttagaggtattgtttccccaaacctggggaatttgtcgttccttgttatacttaacctctccagcaat |
25501203 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagag |
227 |
Q |
| |
|
|||||| |||||||||| |||||||| |
|
|
| T |
25501202 |
agcttcaatggtcagttttctaaagag |
25501176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 25687465 - 25687271
Alignment:
| Q |
56 |
tgtatgcaattgggttggtgtcacttgtgatgagcgacacaatagagtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaac |
155 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||| || ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
25687465 |
tgtatgcaattgggttggtgcaacttgtgacgggcgatacggtagagtccacagtttgattctacgaaacatgagtcttagaggtaccgtttcgccaaac |
25687366 |
T |
|
| Q |
156 |
ttggcgaatctatcctttcttgttatacttgacctaaaaagtaatagcttcggtggtcagtttcctaaagagttatgccagttgcatagattaaa |
250 |
Q |
| |
|
||| |||||| ||| |||| ||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
25687365 |
ttgaggaatctgtccattctagttatacttgacctaaaaaataatagcttcagttgtcagtttcctaaagagttatgccggttgcacatattaaa |
25687271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25635677 - 25635451
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| | |||| |||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25635677 |
taattacttcagacccctatgatattttgtctaataattggtcaactacatcttatgtatgtagttgggttggtgtcacttgtgatgagcgacacaatag |
25635578 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||| ||||||||| | ||||||||| ||| ||||||| |||| |||||| ||| |||| | || || |||||||||||| |||| ||| |
|
|
| T |
25635577 |
agtcaacagtttgaaaatatcaaacatgagacttggaggcactatttctccaaacctggggaatttgtcgttccttgttatacttaacctctcccacaat |
25635478 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagag |
227 |
Q |
| |
|
|| ||| |||||||||||||||||||| |
|
|
| T |
25635477 |
agtttcagtggtcagtttcctaaagag |
25635451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 25738408 - 25738278
Alignment:
| Q |
130 |
gtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaatagcttcggtggtcagtttcctaaagagtt |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||| |
|
|
| T |
25738408 |
gtcttagaggtaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctcaaaaacaatagcttcggtggtcagcttcctacagagtt |
25738309 |
T |
|
| Q |
230 |
atgccagttgcatagattaaagattcttcat |
260 |
Q |
| |
|
||| | ||||| ||||||||||||||||| |
|
|
| T |
25738308 |
atgtcggttgcgccgattaaagattcttcat |
25738278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 23262306 - 23262149
Alignment:
| Q |
33 |
aataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatagagtccacagtttgattcttcgaaacatgagtc |
132 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||| |||||||| || |||||| |||||| |||||||||| ||| ||||||| ||| |
|
|
| T |
23262306 |
aataattggtcaaccacctcttcagtatgcagttgggttggtgtaacttgtgacgaccgacacggtagagttcacagtttgaatctcacaaacatgggtc |
23262207 |
T |
|
| Q |
133 |
ttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacct |
190 |
Q |
| |
|
||||||| || |||||||||||||||| ||||||||| || ||||||| ||||||||| |
|
|
| T |
23262206 |
ttagaggtactgtttccccaaacttggggaatctatctttccttgttaaacttgacct |
23262149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 22880502 - 22880731
Alignment:
| Q |
3 |
attacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatagag |
102 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||||||| |||||| || |||||| |||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
22880502 |
attacttcagatccctatgatattttggctaataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacacaatagag |
22880601 |
T |
|
| Q |
103 |
tccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaatag |
202 |
Q |
| |
|
|| | |||||| ||| |||||||| |||||||| || ||||||| | | | | |||| | || |||||||||||||||||||| | | ||||| |
|
|
| T |
22880602 |
tctatggtttgaatctcacaaacatgaaccttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctccacaacaatag |
22880701 |
T |
|
| Q |
203 |
cttcggtggtcagtttcctaaagagttatg |
232 |
Q |
| |
|
||| |||||||| | ||||||||| |||| |
|
|
| T |
22880702 |
ctttggtggtcaaatgcctaaagagatatg |
22880731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 25330593 - 25330529
Alignment:
| Q |
168 |
tcctttcttgttatacttgacctaaaaagtaatagcttcggtggtcagtttcctaaagagttatg |
232 |
Q |
| |
|
||||| |||||||| |||||||| |||| |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
25330593 |
tccttccttgttatgcttgacctgaaaaacaatagcttcgatggttagtttcctaaagagttatg |
25330529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 24891636 - 24891707
Alignment:
| Q |
161 |
gaatctatcctttcttgttatacttgacctaaaaagtaatagcttcggtggtcagtttcctaaagagttatg |
232 |
Q |
| |
|
|||||| || || ||||||| ||||||| |||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
24891636 |
gaatctgtcattccttgttaagcttgacccgaaaaacaatagcttcgatggtcagtttcctaaagagttatg |
24891707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 25384 - 25615
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||| ||| |
|
|
| T |
25384 |
taattacttcagacccttatgatgtgttggctaataattggtcaacctcctcttccgtatgcaattggattggtgtaacttgtgatgagcggcacggtag |
25483 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| |||| | ||||| ||||||||||||||||| |||| ||| |
|
|
| T |
25484 |
agtccacagtttgattctccgaaacatgagtcttagaggtaccgtttccccaaatttggggaatatgtccttccttgttatacttgacctcaaaaacaat |
25583 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagagttatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25584 |
agcttcggtggtcagtttcctaaagagttatg |
25615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 41077 - 41326
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| || |||||||| || |||| |||| |||||||||||||||||||||||||| || |
|
|
| T |
41077 |
taattacttcagacccctatgatatgttggctaataattggtccacatcctcttcagtgtgcagttgg-ttggtgtcacttgtgatgagcgacacggaag |
41175 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||| ||| || |||| ||| |||||| |||||| || || ||| ||||||| ||| | ||| |
|
|
| T |
41176 |
agtccatagtttgattctctgaaacatgaatcttataggtactgttttccctgacttggggaatctttcgttccttattatactagacatctcccacaat |
41275 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagagttatgccagttgcatagattaaag |
251 |
Q |
| |
|
||||||||||| |||||||| |||||| |||| | ||||||| ||||||| |
|
|
| T |
41276 |
agcttcggtggccagtttcccaaagagatatgtcggttgcatcaattaaag |
41326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 10332350 - 10332091
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
10332350 |
taattacttcagacccctatgatatgctgactaataattggtcaacctcctcatcggtatgcaattgggttggtgttgtttgtgatgagcgacatggtag |
10332251 |
T |
|
| Q |
101 |
agtccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgacctaaaaagtaat |
200 |
Q |
| |
|
|||| ||||||||||||| | ||||||||| |||||||||| | ||||||||||||||| ||| | ||||||||||||| ||||||||| |||| |||| |
|
|
| T |
10332250 |
agtctacagtttgattctccaaaacatgaggcttagaggcaacatttccccaaacttggggaacttgtcctttcttgttacacttgaccttaaaaataat |
10332151 |
T |
|
| Q |
201 |
agcttcggtggtcagtttcctaaagagttatgccagttgcatagattaaagattcttcat |
260 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| | ||||| |||||||| |||||||| |
|
|
| T |
10332150 |
agctttggtggtcagttacctaaagagttatttcggttgcgccgattaaagtttcttcat |
10332091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 23394149 - 23394334
Alignment:
| Q |
3 |
attacttcagacccctatgatatgttgtctaataattggtcaacctcctcttctgtatgcaattgggttggtgtcacttgtgatgagcgacacaatagag |
102 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
23394149 |
attacttcagaccccaatgatatgttagctaataattggtcaacctcctcttctgtatgcagttgggttggtgtcacttgtgatgagagacaccatagag |
23394248 |
T |
|
| Q |
103 |
tccacagtttgattcttcgaaacatgagtcttagaggcaccgtttccccaaacttggcgaatctatcctttcttgttatacttgac |
188 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||| || || |||| ||||| |||| |||||| || || ||||||||||||||| |
|
|
| T |
23394249 |
tccacagcttgactctccgaaacatgagtcttagtggtacaatttctccaaagttggggaatctgtctttccttgttatacttgac |
23394334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0746 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0746
Description:
Target: scaffold0746; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4490 - 4445
Alignment:
| Q |
1 |
taattacttcagacccctatgatatgttgtctaataattggtcaac |
46 |
Q |
| |
|
|||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
4490 |
taattacttcagacccttatgatgtgttggctaataattggtcaac |
4445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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