View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_58 (Length: 267)

Name: NF16817_low_58
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_58
NF16817_low_58
[»] chr7 (18 HSPs)
chr7 (64-258)||(47157953-47158148)
chr7 (78-190)||(26826558-26826671)
chr7 (75-170)||(43664635-43664730)
chr7 (75-171)||(298478-298574)
chr7 (75-186)||(25472567-25472679)
chr7 (66-170)||(1999990-2000094)
chr7 (102-186)||(25191665-25191749)
chr7 (104-190)||(26827566-26827653)
chr7 (66-171)||(47085506-47085612)
chr7 (75-171)||(30139646-30139743)
chr7 (110-186)||(11341647-11341723)
chr7 (75-170)||(15000051-15000147)
chr7 (89-186)||(30825386-30825484)
chr7 (66-190)||(32450924-32451048)
chr7 (109-165)||(39857253-39857309)
chr7 (215-258)||(26826698-26826741)
chr7 (70-171)||(25970611-25970713)
chr7 (206-258)||(43664543-43664596)
[»] chr3 (21 HSPs)
chr3 (64-258)||(30810879-30811073)
chr3 (75-190)||(45488907-45489023)
chr3 (75-190)||(45150781-45150897)
chr3 (66-171)||(50392639-50392745)
chr3 (75-190)||(28182553-28182670)
chr3 (75-171)||(39251660-39251757)
chr3 (75-177)||(53687189-53687292)
chr3 (75-258)||(42274700-42274888)
chr3 (66-171)||(44610646-44610750)
chr3 (75-190)||(11263874-11263990)
chr3 (75-190)||(48181252-48181369)
chr3 (75-171)||(51229910-51230007)
chr3 (106-190)||(40237482-40237565)
chr3 (105-258)||(44328866-44329014)
chr3 (89-171)||(28883887-28883969)
chr3 (75-186)||(48254306-48254418)
chr3 (206-258)||(50392551-50392603)
chr3 (75-129)||(51407647-51407701)
chr3 (126-171)||(33330110-33330155)
chr3 (213-258)||(51407808-51407853)
chr3 (214-258)||(48254231-48254275)
[»] chr5 (13 HSPs)
chr5 (64-258)||(10900303-10900498)
chr5 (75-258)||(41741949-41742136)
chr5 (67-258)||(40979593-40979783)
chr5 (75-186)||(11018232-11018344)
chr5 (75-258)||(31905614-31905802)
chr5 (66-171)||(33387518-33387624)
chr5 (75-190)||(41039935-41040051)
chr5 (89-154)||(2526471-2526536)
chr5 (66-137)||(25256667-25256739)
chr5 (66-137)||(25320458-25320530)
chr5 (75-190)||(8958302-8958418)
chr5 (212-258)||(19356790-19356836)
chr5 (75-123)||(53534-53582)
[»] chr8 (14 HSPs)
chr8 (64-258)||(2025684-2025880)
chr8 (66-186)||(13015852-13015973)
chr8 (75-258)||(22936298-22936484)
chr8 (66-171)||(3590244-3590349)
chr8 (89-190)||(35802143-35802245)
chr8 (64-184)||(37683943-37684064)
chr8 (75-258)||(45276131-45276317)
chr8 (76-190)||(35164180-35164295)
chr8 (75-190)||(36821425-36821542)
chr8 (133-258)||(924267-924396)
chr8 (212-258)||(8416977-8417023)
chr8 (66-131)||(33165965-33166031)
chr8 (78-165)||(8416849-8416937)
chr8 (111-170)||(7637448-7637507)
[»] chr4 (20 HSPs)
chr4 (64-258)||(50523600-50523798)
chr4 (97-186)||(5937696-5937786)
chr4 (75-190)||(45105989-45106105)
chr4 (64-258)||(39732981-39733179)
chr4 (99-165)||(28911786-28911852)
chr4 (78-186)||(29385847-29385956)
chr4 (75-190)||(49723963-49724079)
chr4 (75-159)||(51677281-51677365)
chr4 (75-186)||(53663438-53663550)
chr4 (66-171)||(16202916-16203022)
chr4 (75-164)||(8510341-8510430)
chr4 (75-190)||(22606158-22606275)
chr4 (75-186)||(28963671-28963783)
chr4 (75-177)||(48407135-48407238)
chr4 (75-171)||(30418211-30418308)
chr4 (75-190)||(38767974-38768090)
chr4 (105-190)||(53403915-53404001)
chr4 (206-258)||(53663366-53663418)
chr4 (214-258)||(28963596-28963640)
chr4 (206-258)||(49724098-49724150)
[»] chr1 (24 HSPs)
chr1 (66-186)||(41512317-41512439)
chr1 (75-190)||(50031012-50031129)
chr1 (75-171)||(47655705-47655802)
chr1 (64-245)||(42137445-42137628)
chr1 (77-190)||(44740330-44740444)
chr1 (77-258)||(13509667-13509853)
chr1 (66-186)||(45179504-45179625)
chr1 (75-190)||(46033476-46033592)
chr1 (66-159)||(11829247-11829341)
chr1 (75-153)||(4485020-4485099)
chr1 (75-153)||(6706313-6706392)
chr1 (66-171)||(1762391-1762496)
chr1 (64-135)||(24075693-24075766)
chr1 (75-122)||(27416747-27416794)
chr1 (212-258)||(7385552-7385598)
chr1 (212-258)||(24075828-24075874)
chr1 (213-258)||(47655615-47655660)
chr1 (75-190)||(11050899-11051015)
chr1 (64-178)||(20473615-20473731)
chr1 (64-178)||(20557822-20557938)
chr1 (206-258)||(49430951-49431003)
chr1 (212-258)||(4484961-4485007)
chr1 (220-258)||(6706450-6706488)
chr1 (212-258)||(50031154-50031200)
[»] chr2 (12 HSPs)
chr2 (64-258)||(44002818-44003015)
chr2 (75-258)||(43342004-43342191)
chr2 (100-190)||(19860450-19860541)
chr2 (75-130)||(35458044-35458099)
chr2 (75-178)||(37640572-37640676)
chr2 (64-153)||(12015692-12015782)
chr2 (75-190)||(7473701-7473817)
chr2 (109-258)||(17481005-17481158)
chr2 (71-153)||(37996896-37996979)
chr2 (212-258)||(35457914-35457960)
chr2 (90-171)||(43695161-43695242)
chr2 (75-119)||(32497081-32497125)
[»] scaffold0097 (1 HSPs)
scaffold0097 (75-190)||(32861-32977)
[»] chr6 (4 HSPs)
chr6 (66-190)||(27825172-27825298)
chr6 (75-190)||(10683338-10683454)
chr6 (89-154)||(4146997-4147062)
chr6 (66-150)||(30134316-30134401)
[»] scaffold0808 (1 HSPs)
scaffold0808 (75-258)||(4271-4458)
[»] scaffold0006 (1 HSPs)
scaffold0006 (75-258)||(91719-91906)
[»] scaffold0069 (1 HSPs)
scaffold0069 (75-258)||(16994-17181)
[»] scaffold0068 (2 HSPs)
scaffold0068 (75-177)||(37879-37982)
scaffold0068 (212-258)||(38028-38074)
[»] scaffold0184 (1 HSPs)
scaffold0184 (140-186)||(9560-9606)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 64 - 258
Target Start/End: Complemental strand, 47158148 - 47157953
Alignment:
Q  64 gctttgtatttatttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaatt 163  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47158148 gctttgtatttatttgatgaaccatatttaattagaaaacttaacgaaccaaattagctccagaaaatatttatgatcatgagttaccaaggtttgaatt 47158049  T
Q  164 ttcctttatggtgtttccattcagattaaccgtannnnnnnnac-cttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||||||||||||||||||||||||||| |||        || ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47158048 ttcctttatggtgtttccattcagattaactgtattttttttacgcttgcttttatgctatattttaacatttttggcaactagctctagtattat 47157953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 26826558 - 26826671
Alignment:
Q  78 tgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcctttatggtg 176  Q
    ||||||| || ||||||| |||||| ||||||||||||||||||||| | ||||| |||||| ||||||||||||||  |||||||||||||||| ||||    
T  26826558 tgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcatgagttaccaaattttgaattttcctttacggtg 26826657  T
Q  177 tttccattcagatt 190  Q
    |   ||||||||||    
T  26826658 tccacattcagatt 26826671  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 43664730 - 43664635
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattttccttt 170  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||  ||||| |||||| ||| |||||| |||| |||| ||||||||||    
T  43664730 atttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagcccccaaaaatgtttatggtcacgagttatcaagttttggattttccttt 43664635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 298574 - 298478
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattttccttta 171  Q
    |||||||||| || ||||||| | |||||||||| | |||||||||| |||||||||||||||| |||||||||| |||| |||| ||||| |||||    
T  298574 atttgatgaaccaaatttaatcaaaaaatttaacaatccaaattagctccagaaaatatttatggtcatgagttatcaagttttggatttttcttta 298478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 25472679 - 25472567
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||| ||||| |  |||||||||| ||||| |    
T  25472679 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatatttatggtaatgacttacccaattttgaatttttctttagg 25472580  T
Q  174 gtgtttccattca 186  Q
    ||||  |||||||    
T  25472579 gtgtccccattca 25472567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 2000094 - 1999990
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||||||||| ||||| ||| || ||||||| | |||||||||||||||||||||| |||| |||||||||||| |||||||||| |||| |||| ||||    
T  2000094 tttgtatttaatttgacgaagcaaatttaatcaaaaaatttaacgaaccaaattag-cccaaaaaatatttatggtcatgagttatcaagttttgtattt 1999996  T
Q  165 tccttt 170  Q
    | ||||    
T  1999995 ttcttt 1999990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 25191749 - 25191665
Alignment:
Q  102 atttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattca 186  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||| ||||   ||||||||| ||||| ||| ||||||||||    
T  25191749 atttaacgaaccaaattaaccccaaaaaatatttatgatcaagagttgccaaatattgaatttttctttacggtttttccattca 25191665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 26827653 - 26827566
Alignment:
Q  104 ttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattcagatt 190  Q
    ||||||||||||||||||||  ||||| | |||||| ||||||||||||||  |||||||||||||||| |||||  |||||||||||    
T  26827653 ttaacgaaccaaattagccctcgaaaaatgtttatggtcatgagttaccaaattttgaattttcctttacggtgtccccattcagatt 26827566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 47085612 - 47085506
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||||||||| ||||||||| || ||||||| | ||||||||  ||||||||||| || || |||||||||||| ||||||||||||||  |||| ||||    
T  47085612 tttgtatttaatttgatgaaccaaatttaatcaaaaaatttatggaaccaaattaacctcataaaatatttatggtcatgagttaccaaattttggattt 47085513  T
Q  165 tccttta 171  Q
    | |||||    
T  47085512 ttcttta 47085506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 30139743 - 30139646
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttccttta 171  Q
    ||||||| || || |||||||||||||| ||||||||||||||||||||| | ||||| |||| | |||||| |||||||  |||||||||| |||||    
T  30139743 atttgataaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttacggtcatgacttaccaaattttgaatttttcttta 30139646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 11341647 - 11341723
Alignment:
Q  110 aaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattca 186  Q
    |||||||||||||||| |||||||||||| |||||| |||| ||| ||||  |||||||||| ||||||||| ||||    
T  11341647 aaccaaattagccccataaaatatttatggtcatgatttacaaagatttgtgttttcctttacggtgtttccgttca 11341723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 15000051 - 15000147
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttccttt 170  Q
    |||||||||| || ||||||| |||||| |||| ||||| |||||||||| ||||| | |||||| ||||||||||||||  |||| ||||||||||    
T  15000051 atttgatgaaccaaatttaatcagaaaacttaaagaacctaattagcccctgaaaaatgtttatggtcatgagttaccaaattttggattttccttt 15000147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 30825386 - 30825484
Alignment:
Q  89 atttaattagaaaatttaacgaaccaaattagccccaga-aaatatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattca 186  Q
    ||||||| |||||| ||||| |||||||||| |||| || |||| |||||| ||||||||||||||  ||||||||||| |||| |||||  |||||||    
T  30825386 atttaatcagaaaacttaaccaaccaaattatcccccgataaatgtttatggtcatgagttaccaaattttgaattttcttttacggtgtccccattca 30825484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 32450924 - 32451048
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||||||||| ||||||||| || ||||||| | ||||||||||||||||||||| ||||| ||| |||||||| |||   |||| |||  |||| ||||    
T  32450924 tttgtatttaatttgatgaaccaaatttaataa-aaaatttaacgaaccaaattatccccaaaaattatttatgttcaaatgttatcaaattttggattt 32451022  T
Q  165 tcctttatggtgtttccattcagatt 190  Q
    | || || ||| ||||||||||||||    
T  32451023 ttctctacggtttttccattcagatt 32451048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 39857253 - 39857309
Alignment:
Q  109 gaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaatttt 165  Q
    |||||||||||||| || ||||||||||||| ||||||||| |||| |||| |||||    
T  39857253 gaaccaaattagccacataaaatatttatgaacatgagttatcaagttttggatttt 39857309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 26826698 - 26826741
Alignment:
Q  215 ttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||| ||||||||||| ||||||||||||||| ||||||||||||    
T  26826698 ttacgctatattttatcatttttggcaactaactctagtattat 26826741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 25970611 - 25970713
Alignment:
Q  70 tatttatttgatgaatcatatttaattagaaaatttaacgaaccaaattagccc-cagaaaatatttatgatcatgagttaccaaggtttgaattttcct 168  Q
    |||| |||||||||| || ||||||| |||||| ||||   | ||||||||||  || |||||||||||| |||||| |||||||  |||| ||||||||    
T  25970611 tattaatttgatgaaccaaatttaatgagaaaacttaatagatcaaattagccatcaaaaaatatttatggtcatgaattaccaaattttggattttcct 25970710  T
Q  169 tta 171  Q
    |||    
T  25970711 tta 25970713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 43664596 - 43664543
Alignment:
Q  206 accttacttttatgctatattttaa-catttttggcaactagctctagtattat 258  Q
    ||||| ||||||||||||||||| | |||||||| |||||| ||||||||||||    
T  43664596 acctttcttttatgctatatttttatcatttttgacaactaactctagtattat 43664543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 258
Target Start/End: Original strand, 30810879 - 30811073
Alignment:
Q  64 gctttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaa 161  Q
    |||||||||||| ||||||||| || ||||||| |||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||| |||| |    
T  30810879 gctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggtcatgagttaccaagttttgga 30810978  T
Q  162 ttttcctttatggtgtttccattcagattaaccgtannnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||||||| |||||||||||||| | | || |||        | ||| |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  30810979 ttttcctttacggtgtttccattcaaaattactgta--ttatttaactttcttttacgctatattttatcatttttggcaactaactctagtattat 30811073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 45489023 - 45488907
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagcc-ccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || |||||| |||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||| |||| ||||| ||||| |    
T  45489023 atttgatgaaccaaatttaactagaaaatttaacgaaccaaattaacctccagaaaatatttatggttatgagttaccaagttttggatttttctttacg 45488924  T
Q  174 gtgtttccattcagatt 190  Q
    | |||||||||||||||    
T  45488923 gcgtttccattcagatt 45488907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 45150781 - 45150897
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    ||||||||||  | ||||||| |||||| |||| |||||||||||||||| ||||| | |||||| |||||| |||||||  ||||||||||||||||||    
T  45150781 atttgatgaacaaaatttaatcagaaaacttaatgaaccaaattagcccccgaaaaatgtttatggtcatgaattaccaaattttgaattttcctttatg 45150880  T
Q  174 gtgtttccattcagatt 190  Q
    ||||  |||||||||||    
T  45150881 gtgtccccattcagatt 45150897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 50392745 - 50392639
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattag-ccccagaaaatatttatgatcatgagttaccaaggtttgaatt 163  Q
    |||||||||| ||||||||| || ||||||| |||||| ||||||||||||||||| ||||| |||||||||||| | ||||||||||||| |||| |||    
T  50392745 tttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggt-atgagttaccaagttttggatt 50392647  T
Q  164 ttccttta 171  Q
    ||||||||    
T  50392646 ttccttta 50392639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 28182553 - 28182670
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttacc-aaggtttgaattttcctttat 172  Q
    |||||||||| || ||||||| |||| | ||||||||||||||||||||| | |||||||||||| ||||||||| || ||  ||||||||||||||||     
T  28182553 atttgatgaaccaaatttaatcagaagacttaacgaaccaaattagcccccgaaaaatatttatggtcatgagttgccaaatttttgaattttcctttac 28182652  T
Q  173 ggtgtttccattcagatt 190  Q
    ||| | ||||||||||||    
T  28182653 ggtatctccattcagatt 28182670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 39251660 - 39251757
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttccttta 171  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||||| | ||||| |||||| |||||| |||||||  |||||||||| |||||    
T  39251660 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcatgacttaccaaattttgaatttttcttta 39251757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 53687292 - 53687189
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagcc-ccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||  || ||| ||| |||||| ||||| ||||||||||||| ||| ||||| ||||||||||||||||| |||| |||||||||||||||| |    
T  53687292 atttgatgagccaaattaaataagaaaacttaaccaaccaaattagcctccaaaaaatgtttatgatcatgagttatcaagttttgaattttcctttacg 53687193  T
Q  174 gtgt 177  Q
    ||||    
T  53687192 gtgt 53687189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 42274700 - 42274888
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcc-tttat 172  Q
    |||||||||| || |||| || |||||| ||| ||||||||||||||||| | ||||| |||||  ||||||||||||||  |||||||||||| ||||     
T  42274700 atttgatgaaccaaatttgatcagaaaacttatcgaaccaaattagcccccgaaaaatgtttatagtcatgagttaccaaattttgaattttccttttac 42274799  T
Q  173 ggtgtttccattcagattaaccgta---nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||  ||||||||||| || |||           ||||| |||||| ||||||||||| |||||||| |||||| ||||||||||||    
T  42274800 ggtgtccccattcagatttactgtactttttcttttacctttcttttacgctatattttatcatttttgacaactaactctagtattat 42274888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 44610750 - 44610646
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||||||||| ||||||||| || ||||||| | ||||| ||||||| ||||||||| ||| |||||||||||| | ||||||||||||| |||||||||    
T  44610750 tttgtatttaatttgatgaaccaaatttaatca-aaaatctaacgaatcaaattagctccataaaatatttatggt-atgagttaccaagttttgaattt 44610653  T
Q  165 tccttta 171  Q
    | |||||    
T  44610652 ttcttta 44610646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 11263874 - 11263990
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    ||||||||||  | ||| ||| |||||| |||| |||||||||||||||  ||||| | |||||| |||||||||| |||  |||||||||||||||| |    
T  11263874 atttgatgaacaaaattcaatcagaaaacttaatgaaccaaattagccctcgaaaaatgtttatggtcatgagttatcaaattttgaattttcctttacg 11263973  T
Q  174 gtgtttccattcagatt 190  Q
    ||||  |||||||||||    
T  11263974 gtgtccccattcagatt 11263990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 48181252 - 48181369
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc--agaaaatatttatgatcatgagttaccaaggtttgaattttcctttat 172  Q
    |||| ||||| || ||||||| |||||| ||||||| |||||||||||||  | ||||| |||||| ||||||||||||||  |||  |||||||||||     
T  48181252 atttcatgaaccaaatttaatcagaaaacttaacgagccaaattagcccccgaaaaaatgtttatggtcatgagttaccaaattttagattttcctttac 48181351  T
Q  173 ggtgtttccattcagatt 190  Q
    | |||  |||||||||||    
T  48181352 gctgtccccattcagatt 48181369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 51229910 - 51230007
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaata-tttatgatcatgagttaccaaggtttgaattttccttta 171  Q
    ||||||||||||| ||||||| |||||| |||||  |||||||||||||| ||||| | |||||  |||||||||| |||  |||| |||||||||||    
T  51229910 atttgatgaatcaaatttaataagaaaacttaaccgaccaaattagcccccgaaaaaagtttatcgtcatgagttatcaaattttggattttccttta 51230007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 40237482 - 40237565
Alignment:
Q  106 aacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattcagatt 190  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||  ||||| ||||  |||| ||| ||||| ||||||||    
T  40237482 aacgaaccaaattagccccataaaatatttatgaatatgagttaccaaattttgagtttt-ttttacggtatttccgttcagatt 40237565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 258
Target Start/End: Original strand, 44328866 - 44329014
Alignment:
Q  105 taacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattcagattaaccgtannnnnnn 204  Q
    ||||||||||||||||||| | |||||||||||| ||| ||||||||||| |||  |||||  |||| ||| ||||| |||||||| || |||           
T  44328866 taacgaaccaaattagcccaaaaaaatatttatggtcaggagttaccaagttttagatttt-ttttacggtttttccgttcagatttactgtattttttt 44328964  T
Q  205 naccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
        || ||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  44328965 t---tttcttttatgctata-tttatcatttttggcaactagctctattattat 44329014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 28883887 - 28883969
Alignment:
Q  89 atttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattttccttta 171  Q
    ||||||| | || |||||||||||||||||||||||| |||||||||||| |||  | |||||||| |||  ||||| |||||    
T  28883887 atttaatcaaaatatttaacgaaccaaattagccccaaaaaatatttatggtcaacaattaccaagttttagatttttcttta 28883969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 48254418 - 48254306
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || |||||||||||||| |||| |||  ||||||||||  | ||||| |||||| |||||| ||| |||  |||||||||| ||||| |    
T  48254418 atttgatgaaccaaatttaattagaaaacttaaggaattaaattagcccttgaaaaatgtttatggtcatgacttatcaaattttgaatttttctttacg 48254319  T
Q  174 gtgtttccattca 186  Q
    ||||  |||||||    
T  48254318 gtgtccccattca 48254306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 50392603 - 50392551
Alignment:
Q  206 accttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||||| |||||| ||| ||||||| ||||||||||||||| ||||||||||||    
T  50392603 acctttcttttacgctctattttatcatttttggcaactaactctagtattat 50392551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 51407647 - 51407701
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaa 129  Q
    |||||||||| |  ||||||| ||||||||||||||| |||||||||||| ||||    
T  51407647 atttgatgaaccgaatttaatcagaaaatttaacgaaacaaattagcccccgaaa 51407701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 33330155 - 33330110
Alignment:
Q  126 gaaaatatttatgatcatgagttaccaaggtttgaattttccttta 171  Q
    ||||||||||||| ||||||||||||||| |||| ||||| |||||    
T  33330155 gaaaatatttatggtcatgagttaccaagttttggatttttcttta 33330110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 51407808 - 51407853
Alignment:
Q  213 ttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||||| ||| ||||||| ||||||||||||||| ||||||||||||    
T  51407808 ttttacgctgtattttatcatttttggcaactaactctagtattat 51407853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 48254275 - 48254231
Alignment:
Q  214 tttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||| ||||||||||| ||||||||||||||| ||||| ||||||    
T  48254275 tttacgctatattttatcatttttggcaactaactctactattat 48254231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 258
Target Start/End: Original strand, 10900303 - 10900498
Alignment:
Q  64 gctttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaat 162  Q
    |||||||||||| ||||||||| || ||||||| |||||| |||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||| ||    
T  10900303 gctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagccccataaaagatttatggtcatgagttaccaagttttggat 10900402  T
Q  163 tttcctttatggtgtttccattcagattaaccgtannnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||||||  |||||||| |||| ||| || |||        ||||| |||||| |||||||||||  |||||||||||||| ||| | ||||||    
T  10900403 tttcctttacagtgtttcctttcaaatttactgtattttttttacctttcttttacgctatattttattatttttggcaactaactccaatattat 10900498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 258
Target Start/End: Complemental strand, 41742136 - 41741949
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagc-cccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || |||||||||||||| |||||||||||||||||| |||| |||||||||||| |||||| |||||||  ||| |||||| ||||| |    
T  41742136 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatatttatggtcatgacttaccaaattttaaatttttctttacg 41742037  T
Q  174 gtgtttccattcagattaaccgta---nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||| |||||||||||| || |||           || || |||||| ||||||||||| ||||||||||||||| |||| |||||||    
T  41742036 gtgtctccattcagatttacagtattttttcttttacatttcttttacgctatattttatcatttttggcaactaactcttgtattat 41741949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 258
Target Start/End: Original strand, 40979593 - 40979783
Alignment:
Q  67 ttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaatttt 165  Q
    ||||||||| ||||||||| || ||||||| ||||||  |||| |||||||||| ||||| |||||||||||| |||  | |||||||| |||| |||||    
T  40979593 ttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaattacccccataaaatatttatggtca--aattaccaagttttggatttt 40979690  T
Q  166 cctttatggtgtttccattcagattaaccgtannnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||| ||||||||| |||| ||| || |||        ||||| |||||| ||| ||||||  ||||||||||||||| ||||||||||||    
T  40979691 cctttacggtgtttcctttcaaatttactgtattttttttacctttcttttacgctctattttttcatttttggcaactaactctagtattat 40979783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 11018344 - 11018232
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || ||||||| | |||| ||| ||||||||||||||||| | |||||||||||| ||||||| ||||||| |||| ||||||||||| |    
T  11018344 atttgatgaaccaaatttaatcaaaaaacttagcgaaccaaattagcccctgtaaaatatttatggtcatgagctaccaagttttggattttcctttacg 11018245  T
Q  174 gtgtttccattca 186  Q
    ||||  |||||||    
T  11018244 gtgtccccattca 11018232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 31905614 - 31905802
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagc-cccagaaaatatttatgatcat-gagttaccaaggtttgaattttcctttat 172  Q
    |||||||||| || |||||||||||||| |||||||||||||||||| |||| |||||||||||| |||| || |||| ||  |||||||||| |||||     
T  31905614 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatatttatggtcatagacttacaaaattttgaatttttctttac 31905713  T
Q  173 ggtgtttccattcagattaaccgta---nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||  | ||||||||| ||  ||           || || |||||||||||||||||| ||||||||||||||| | ||||||||||    
T  31905714 ggtgtccctattcagatttacaatattttttcttttacatttcttttatgctatattttatcatttttggcaactaaccctagtattat 31905802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 33387624 - 33387518
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||||||||| ||||||||| || ||||||| | |||| |||| |||| ||||||||| ||||||||||||||| ||||||||||| ||| |||| ||||    
T  33387624 tttgtatttaatttgatgaaccaaatttaatcaaaaaaattaatgaactaaattagcctcagaaaatatttatggtcatgagttactaagttttggattt 33387525  T
Q  165 tccttta 171  Q
    | |||||    
T  33387524 ttcttta 33387518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 41040051 - 41039935
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    ||||||||||  | ||||||| |||||| ||| | || |||||||||||| ||||| | |||||| ||||||||||||||  |||||||||||||||| |    
T  41040051 atttgatgaacaaaatttaatcagaaaacttagcaaatcaaattagcccccgaaaaatgtttatggtcatgagttaccaaattttgaattttcctttacg 41039952  T
Q  174 gtgtttccattcagatt 190  Q
    ||||  |||||||||||    
T  41039951 gtgtccccattcagatt 41039935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 2526471 - 2526536
Alignment:
Q  89 atttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaag 154  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||| |  ||||||||||||||    
T  2526471 atttaatcaaaaaatttaacgaaccaaattagccccataaaatatttacggacatgagttaccaag 2526536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 25256739 - 25256667
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttat 137  Q
    |||||||||| ||||||||| || ||||||| | ||||| |||||||||||||||||| ||||||||||||||    
T  25256739 tttgtatttaatttgatgaaccaaatttaatcaaaaaatataacgaaccaaattagcctcagaaaatatttat 25256667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 25320530 - 25320458
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttat 137  Q
    |||||||||| ||||||||| || ||||||| | ||||| |||||||||||||||||| ||||||||||||||    
T  25320530 tttgtatttaatttgatgaaccaaatttaatcaaaaaatataacgaaccaaattagcctcagaaaatatttat 25320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 8958418 - 8958302
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || ||||||| || ||| ||||| |||||||||| |||| | ||||| |||||| |||||| |||||| | |||| ||||||||||| |    
T  8958418 atttgatgaaccaaatttaatcaggaaacttaaccaaccaaattaacccccataaaatgtttatggtcatgaattaccatgttttggattttcctttacg 8958319  T
Q  174 gtgtttccattcagatt 190  Q
    || |  |||||||||||    
T  8958318 gtatccccattcagatt 8958302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 19356790 - 19356836
Alignment:
Q  212 cttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  19356790 cttttacgctatattttatcatttttggcaactaactctagtattat 19356836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 53582 - 53534
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccc 123  Q
    |||||||||| |  |||||||||||||| ||||||||||||||||||||    
T  53582 atttgatgaaccgaatttaattagaaaacttaacgaaccaaattagccc 53534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 258
Target Start/End: Original strand, 2025684 - 2025880
Alignment:
Q  64 gctttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaa 161  Q
    |||||||||||| ||||||||| || ||||||| | |||| ||||||||| ||||||||||| | ||||||||| || ||||||||||||||| |||| |    
T  2025684 gctttgtatttaatttgatgaaccaaatttaatcataaaacttaacgaactaaattagcccccataaaatatttgtggtcatgagttaccaagttttgga 2025783  T
Q  162 ttttcctttatggtgtttccattcagattaaccgtannnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||||||| ||||||||  |||| ||| || |||        ||||| |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  2025784 ttttcctttacggtgtttcatttcaaatttactgtatttattttacctttcttttacgctatattttatcatttttggcaactaactctagtattat 2025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 13015852 - 13015973
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||||||||| |||||||||||| ||||||| | ||||||||||||| ||||||||| | | |||||||||||| ||| ||||||||||| |||||||||    
T  13015852 tttgtatttaatttgatgaatcaaatttaatcaaaaaatttaacgaatcaaattagcacaaaaaaatatttatggtcaagagttaccaagttttgaattt 13015951  T
Q  165 tcctttatggtgtttccattca 186  Q
    | ||||| ||| ||||| ||||    
T  13015952 ttctttacggtttttccgttca 13015973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 258
Target Start/End: Complemental strand, 22936484 - 22936298
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatgg 174  Q
    |||||||||| || |||||||||||||| |||||||||||||||||||||  |||||||||||| || ||| |||||||  |||||||||| ||||| ||    
T  22936484 atttgatgaaccaaatttaattagaaaagttaacgaaccaaattagcccccaaaaatatttatggtcgtgacttaccaaattttgaatttttctttacgg 22936385  T
Q  175 tgtttccattcagattaaccgta---nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||  ||||||| ||| || |||           || || | |||| ||||||||||| ||||||||||||||| ||||||||||||    
T  22936384 tgtccccattcaaatttactgtattttttcttttacatttcatttacgctatattttatcatttttggcaactaactctagtattat 22936298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 3590244 - 3590349
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||||||||| ||||||||| || ||||||| | |||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||| |||| ||||    
T  3590244 tttgtatttaatttgatgaaccaaatttaataaaaaaatt-aacgaactaaattagcctcagaaaatatttatggtcatgagttaccaagttttggattt 3590342  T
Q  165 tccttta 171  Q
    | |||||    
T  3590343 ttcttta 3590349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 35802245 - 35802143
Alignment:
Q  89 atttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattcag 187  Q
    ||||||| |||||| ||||| ||||||||||||||| ||||| | |||||| ||||||||||||||  |||||||||||||||| | |||  ||||||||    
T  35802245 atttaatcagaaaacttaacaaaccaaattagcccccgaaaaatgtttatggtcatgagttaccaaattttgaattttcctttacgatgtccccattcag 35802146  T
Q  188 att 190  Q
    |||    
T  35802145 att 35802143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 37684064 - 37683943
Alignment:
Q  64 gctttgtattt-atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaat 162  Q
    ||||||||||| |||||||||| || |||| ||   ||||||| ||||||||||||||||| | |||||||| |||||||||| | |||||| ||||| |    
T  37684064 gctttgtatttgatttgatgaaccaaatttgatctaaaaatttgacgaaccaaattagccctataaaatattaatgatcatgattcaccaagctttgagt 37683965  T
Q  163 tttcctttatggtgtttccatt 184  Q
    ||||| ||| ||||||| ||||    
T  37683964 tttccattaaggtgttttcatt 37683943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 258
Target Start/End: Complemental strand, 45276317 - 45276131
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagc-cccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || |||||||||||||| |||||||||||||||||| |||| ||||| |||| | |||||| ||||| |  |||||||||| ||||| |    
T  45276317 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatgttta-ggtcatgacttaccgaattttgaatttttctttacg 45276219  T
Q  174 gtgtttccattcagattaaccgta---nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||||  ||||||||||| || |||           || || |||||| |||||| |||| ||||||||||||||| ||||||||||||    
T  45276218 gtgtccccattcagatttacagtattttttcttttacatttcttttacgctatactttatcatttttggcaactaactctagtattat 45276131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 35164295 - 35164180
Alignment:
Q  76 tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccaga-aaatatttatgatcatgagttaccaaggtttgaattttcctttatgg 174  Q
    ||||||||| || ||||||| |||||| ||||| ||||||||||||| | || |||| |||||| ||||||||||||||  |||| |||||| |||| ||    
T  35164295 tttgatgaaccaaatttaatcagaaaacttaaccaaccaaattagcctccgataaatgtttatggtcatgagttaccaaattttggattttcttttacgg 35164196  T
Q  175 tgtttccattcagatt 190  Q
    |||  |||||||||||    
T  35164195 tgtccccattcagatt 35164180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 36821542 - 36821425
Alignment:
Q  75 atttgatgaatcatatttaattagaaaat-ttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttat 172  Q
    |||||||||| || ||||||| | ||||  ||| ||||||||||||||||| ||||| |||| ||| | ||||||||||||| |||| |||||||| ||     
T  36821542 atttgatgaaccaaatttaatcaaaaaaacttagcgaaccaaattagcccccgaaaaatattaatggttatgagttaccaagttttggattttcctctac 36821443  T
Q  173 ggtgtttccattcagatt 190  Q
    ||||| ||||||||||||    
T  36821442 ggtgtctccattcagatt 36821425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 924267 - 924396
Alignment:
Q  133 tttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattcagattaaccgtannnnnnnn----accttacttttatgctatatttt 228  Q
    |||||| ||||||||||| ||| ||||||||||||||| |||||||||| |||||||  || |||            ||||| |||||| ||||||||||    
T  924267 tttatggtcatgagttactaagttttgaattttcctttgtggtgtttccgttcagatatactgtattttttttttttacctttcttttacgctatatttt 924366  T
Q  229 aacatttttggcaactagctctagtattat 258  Q
    | |||||||| |||||| ||||||||||||    
T  924367 atcatttttgacaactaactctagtattat 924396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 8416977 - 8417023
Alignment:
Q  212 cttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  8416977 cttttacgctatattttatcatttttggcaactaactctagtattat 8417023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 33165965 - 33166031
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaat 131  Q
    |||||||||| ||||| ||| || ||||||| | ||||||||||||||||||||||||||| |||||    
T  33165965 tttgtatttaatttgaggaaacaaatttaatcaaaaaatttaacgaaccaaattagccccataaaat 33166031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 8416849 - 8416937
Alignment:
Q  78 tgatgaatcatatttaattagaaaatttaacgaaccaaattagc-cccagaaaatatttatgatcatgagttaccaaggtttgaatttt 165  Q
    ||||||| || | |||||||||||| || ||||||||||||||| |||  ||||| |||||| |||||| |||||||  ||||||||||    
T  8416849 tgatgaaccaaaattaattagaaaacttcacgaaccaaattagcacccgaaaaatgtttatggtcatgacttaccaaattttgaatttt 8416937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 7637448 - 7637507
Alignment:
Q  111 accaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattttccttt 170  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||  |||  ||||||||||    
T  7637448 accaaattagccccaaaaaatatttatggtcatgagctaccaaattttagattttccttt 7637507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 258
Target Start/End: Complemental strand, 50523798 - 50523600
Alignment:
Q  64 gctttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattag-ccccagaaaatatttatgatcatgagttaccaaggtttgaa 161  Q
    |||||||||||| ||||||||| || ||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||  |||  |    
T  50523798 gctttgtatttaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagcccccataaaatatttatggtcatgagttaccaaattttaga 50523699  T
Q  162 ttttcctttatggtgtttccattcagattaaccgta--nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||||| |||| ||||||||| |||| ||| || |||          ||||| |||||| ||||||||||| ||||||||||||||| ||||| ||||||    
T  50523698 ttttcatttacggtgtttcctttcaaatttactgtattttttttttacctttcttttacgctatattttatcatttttggcaactaactctattattat 50523600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 5937786 - 5937696
Alignment:
Q  97 agaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattca 186  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||    
T  5937786 agaaaacttaacgaaccaaattagcccccataaaatatttatgatcatgagttaccaagttttggattttcctttacggtgtttcctttca 5937696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 45105989 - 45106105
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaata-tttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || ||||||| |||||| ||||| |||||| |||||||| ||||||  |||||| ||||||||||||||| ||| |||||||||||| |    
T  45105989 atttgatgaaccaaatttaataagaaaacttaaccaaccaatttagcccccgaaaattgtttatggtcatgagttaccaagttttaaattttcctttacg 45106088  T
Q  174 gtgtttccattcagatt 190  Q
    ||||  |||||||||||    
T  45106089 gtgtacccattcagatt 45106105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 64 - 258
Target Start/End: Original strand, 39732981 - 39733179
Alignment:
Q  64 gctttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaa 161  Q
    |||||||||||| ||||||||| || ||||||| ||||||  |||| |||||||||| |||| | |||||||||||| ||||||||||||||| |||| |    
T  39732981 gctttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaattaacccccataaaatatttatggtcatgagttaccaagttttgga 39733080  T
Q  162 ttttcctttatggtgtttccattcagattaaccgta--nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    || ||||| | ||||||||| |||| ||| || |||          ||||| |||||| |||  |||||| ||||||||||||||| ||||||||||||    
T  39733081 ttgtccttcacggtgtttcctttcaaatttactgtattttttttttacctttcttttacgctcaattttatcatttttggcaactaactctagtattat 39733179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 28911786 - 28911852
Alignment:
Q  99 aaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaatttt 165  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||    
T  28911786 aaaatttaacgaaccaaattagccccataaaatatttatgaacatgagttaccaagttttgagtttt 28911852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 29385956 - 29385847
Alignment:
Q  78 tgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcctttatggtg 176  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| | |||||| ||||| |  ||||||||||  |||| ||||    
T  29385956 tgatgaatcaaatttaattagaaaatttaacgaaccaaattagcccccgaaaaatatttaaggtcatgacttacccaattttgaatttttatttacggtg 29385857  T
Q  177 tttccattca 186  Q
    |  |||||||    
T  29385856 tccccattca 29385847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 49723963 - 49724079
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    ||||||| || || ||||||| |||||| ||||||||||||||||| ||  ||||| | |||||| ||||||||||||||  |||| ||||||||||| |    
T  49723963 atttgataaaccaaatttaatcagaaaaattaacgaaccaaattagtccttgaaaaatgtttatggtcatgagttaccaaattttggattttcctttacg 49724062  T
Q  174 gtgtttccattcagatt 190  Q
    ||||||| |||||||||    
T  49724063 gtgtttctattcagatt 49724079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 51677281 - 51677365
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttg 159  Q
    |||||||||| || ||||||| | |||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  51677281 atttgatgaaccaaatttaatcaaaaaattcaacgatccaaattagctccaggaaatatttatgatcatgagttaccaagttttg 51677365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 53663550 - 53663438
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || ||||||| |||||| |||||||||| |||||||||| ||||| | |||||| ||||||||||||||  |||| ||||||||||| |    
T  53663550 atttgatgaaccaaatttaatcagaaaacttaacgaacctaattagcccctgaaaaatgtttatggtcatgagttaccaaattttggattttcctttacg 53663451  T
Q  174 gtgtttccattca 186  Q
    ||||  |||||||    
T  53663450 gtgtccccattca 53663438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 16203022 - 16202916
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||||||||| ||||||||| || ||||||| | |||| |||| |||| ||||||||| | ||||||||||||| ||||||||||||||| |||  ||||    
T  16203022 tttgtatttaatttgatgaaccaaatttaatcaaaaaaattaatgaactaaattagcctcggaaaatatttatggtcatgagttaccaagttttagattt 16202923  T
Q  165 tccttta 171  Q
    | |||||    
T  16202922 ttcttta 16202916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 8510341 - 8510430
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||| ||||| || ||||||| |||||| |||||||||||||||||||| |||||||| ||||| |||||| ||| |||| |||| ||||    
T  8510341 atttaatgaaccaaatttaatcagaaaacttaacgaaccaaattagccctagaaaataattatggtcatgaattatcaagttttggattt 8510430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 22606275 - 22606158
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgag-ttaccaaggtttgaattttcctttat 172  Q
    ||||||||||  | ||||||| |||||| ||| ||||||||||||||||| | ||||| |||||| ||||||| || ||||  ||||||||||||||||     
T  22606275 atttgatgaacaaaatttaatcagaaaacttagcgaaccaaattagcccccgaaaaatgtttatggtcatgagtttgccaaattttgaattttcctttac 22606176  T
Q  173 ggtgtttccattcagatt 190  Q
    |||||  |||||||||||    
T  22606175 ggtgtccccattcagatt 22606158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 28963783 - 28963671
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || |||||||||||||| ||||||||  ||||||||||  | ||||| |||||| |||||| ||| |||  |||||||||| ||||| |    
T  28963783 atttgatgaaccaaatttaattagaaaacttaacgaattaaattagcccttgaaaaatgtttatggtcatgacttatcaaattttgaatttttctttacg 28963684  T
Q  174 gtgtttccattca 186  Q
    |||| ||||||||    
T  28963683 gtgtctccattca 28963671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 48407135 - 48407238
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    ||||||||||  | ||||||| | ||||  || |||| |||||||||||| ||||| |||||||| ||||||||||||||  |||||||||||||||| |    
T  48407135 atttgatgaacaaaatttaatcataaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaaattttgaattttcctttacg 48407234  T
Q  174 gtgt 177  Q
    ||||    
T  48407235 gtgt 48407238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 30418308 - 30418211
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttccttta 171  Q
    |||||||||| || |||||||||||||| |||||||| |||||||||||| | ||||| |||||| |||||| ||| | |  |||||||||| |||||    
T  30418308 atttgatgaaccaaatttaattagaaaacttaacgaatcaaattagcccccgaaaaatgtttatggtcatgacttatccaattttgaatttttcttta 30418211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 38767974 - 38768090
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    ||||||||||  | |||||||  ||||| ||| |||||||||||||| || ||||| | |||||| || |||||||||||  |||||||||| ||||| |    
T  38767974 atttgatgaacaaaatttaatcggaaaacttagcgaaccaaattagcacctgaaaaatgtttatggtcgtgagttaccaaattttgaatttttctttacg 38768073  T
Q  174 gtgtttccattcagatt 190  Q
    ||||  |||||||||||    
T  38768074 gtgtccccattcagatt 38768090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 53404001 - 53403915
Alignment:
Q  105 taacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattcagatt 190  Q
    |||||||||||||||||| | ||||| | |||||| ||||||||||||||  | |||||||| ||||| |||||  |||||||||||    
T  53404001 taacgaaccaaattagccaccgaaaaatgtttatggtcatgagttaccaaattctgaatttttctttacggtgtccccattcagatt 53403915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 53663418 - 53663366
Alignment:
Q  206 accttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||||| |||||| |||||||| || ||||||||||||||| ||||||||||||    
T  53663418 acctttcttttacgctatattgtatcatttttggcaactaactctagtattat 53663366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 28963640 - 28963596
Alignment:
Q  214 tttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||| ||||||||||| ||||||||||||||| ||||| ||||||    
T  28963640 tttacgctatattttatcatttttggcaactaactctactattat 28963596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 49724098 - 49724150
Alignment:
Q  206 accttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||||| |||||| ||||||||||| ||||||||| ||||| ||||| ||||||    
T  49724098 acctttcttttacgctatattttatcatttttggaaactaactctaatattat 49724150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 41512317 - 41512439
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaatt 163  Q
    |||||||||| ||||||||| || ||||||| |||||| ||||||||||||||||||||| | ||||||||||||  |||||||||||||| |||| |||    
T  41512317 tttgtatttagtttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggccatgagttaccaagttttggatt 41512416  T
Q  164 ttcctttatggtgtttccattca 186  Q
    |||||||| ||||||||| ||||    
T  41512417 ttcctttacggtgtttcctttca 41512439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 50031012 - 50031129
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagc--cccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttat 172  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||  || | ||||| |||||| |||||| |||||||  |||||||||| |||||     
T  50031012 atttgatgaatcaaatttaattagaaaacttaacgaaccaaattagcgtccaaaaaaatgtttatggtcatgacttaccaaattttgaatttttctttac 50031111  T
Q  173 ggtgtttccattcagatt 190  Q
    |||||  |||||||||||    
T  50031112 ggtgtccccattcagatt 50031129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 47655802 - 47655705
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttccttta 171  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||| |||||||  |||||||||| |||||    
T  47655802 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatatttatggtcatgacttaccaaattttgaatttttcttta 47655705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 64 - 245
Target Start/End: Complemental strand, 42137628 - 42137445
Alignment:
Q  64 gctttgtatttatt-tgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaa 161  Q
    |||||||||||| | |||| || || ||||||| |||||| |||||||||||| ||| |||| | |||||||||||| ||||||||||||||  |||  |    
T  42137628 gctttgtatttaatctgataaaccaaatttaatcagaaaacttaacgaaccaacttaacccccataaaatatttatggtcatgagttaccaaattttata 42137529  T
Q  162 ttttcctttatggtgtttccattcagattaaccgtannnnnnnnaccttacttttatgctatattttaacatttttggcaacta 245  Q
    |||||||||| |||||||||||||| ||| ||  ||        || || |||||| ||||||||||| |||||||||||||||    
T  42137528 ttttcctttacggtgtttccattcaaatttactttattttttttacatttcttttacgctatattttatcatttttggcaacta 42137445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 44740330 - 44740444
Alignment:
Q  77 ttgatgaatcatatttaattagaaaatttaacgaaccaaattagcc-ccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatggt 175  Q
    |||||||| || ||||||| |||||| ||||||||||||||||||| ||  |||||||||||  ||||||||||||||  |||| |||||| |||| |||    
T  44740330 ttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccgaaaaatatttattgtcatgagttaccaaattttggattttcttttacggt 44740429  T
Q  176 gtttccattcagatt 190  Q
    ||  |||||||||||    
T  44740430 gtccccattcagatt 44740444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 258
Target Start/End: Complemental strand, 13509853 - 13509667
Alignment:
Q  77 ttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcctttatggt 175  Q
    |||||||| || ||||||||| |||| | ||||||||||||||||||| | ||||| |||||| |||||| |||||||  |||||||||| ||||| |||    
T  13509853 ttgatgaaccaaatttaattacaaaactgaacgaaccaaattagcccccgaaaaatgtttatggtcatgacttaccaaattttgaatttttctttacggt 13509754  T
Q  176 gtttccattcagattaaccgta----nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||  ||||||| ||| || |||            || || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  13509753 gtccccattcaaatttactgtatttttttcttttacatttcttttacgctatattttatcatttttggcaactaactctagtattat 13509667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 45179504 - 45179625
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||||||||| |||||||||||| ||||||| | |||| |  ||||||||||||||||| | |||||||||||| ||||| ||||||||| |||| ||||    
T  45179504 tttgtatttaatttgatgaatcaaatttaatcaaaaaaatctacgaaccaaattagccctacaaaatatttatggtcatgggttaccaagttttggattt 45179603  T
Q  165 tcctttatggtgtttccattca 186  Q
    |  |||| ||| ||||| ||||    
T  45179604 ttatttacggtttttccgttca 45179625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 46033592 - 46033476
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || ||||||| |||||| | ||| ||||||||||||||| | ||||||||||   ||||||||||||||| |||  ||||||||||  |    
T  46033592 atttgatgaaccaaatttaatcagaaaactcaacaaaccaaattagcccccaaaaaatatttactgtcatgagttaccaagttttagattttcctttgcg 46033493  T
Q  174 gtgtttccattcagatt 190  Q
    |||||||| ||||||||    
T  46033492 gtgtttccgttcagatt 46033476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 11829247 - 11829341
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttg 159  Q
    |||||||||| ||||| ||| || ||||||| | ||||||||||||||||||||| ||||| |||||||||||||   |||||||||||| ||||    
T  11829247 tttgtatttaatttgaggaaccaaatttaatcaaaaaatttaacgaaccaaattaaccccataaaatatttatgaatctgagttaccaagttttg 11829341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 4485099 - 4485020
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaa 153  Q
    |||||||||| || |||||||||||||| |||||||| | |||||||||| | |||||||||||| |||||| |||||||    
T  4485099 atttgatgaaccaaatttaattagaaaacttaacgaaactaattagcccccgaaaaatatttatggtcatgatttaccaa 4485020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 153
Target Start/End: Original strand, 6706313 - 6706392
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagcc-ccagaaaatatttatgatcatgagttaccaa 153  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||| ||  ||||| |||||| |||||| |||||||    
T  6706313 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcctccgaaaaatgtttatggtcatgacttaccaa 6706392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 1762391 - 1762496
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattt 164  Q
    |||||||||| ||||||||| || |||  || | |||||||||||||||||||||||| | ||||||||||| | ||||||||||||||  |||| ||||    
T  1762391 tttgtatttaatttgatgaaccaaattgtatcaaaaaatttaacgaaccaaattagcctcggaaaatattta-ggtcatgagttaccaaattttggattt 1762489  T
Q  165 tccttta 171  Q
    | |||||    
T  1762490 ttcttta 1762496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 24075693 - 24075766
Alignment:
Q  64 gctttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagcc-ccagaaaatattt 135  Q
    |||||||||||| ||||||||| || ||||||| |||||| ||||||||||||||||||| ||| |||||||||    
T  24075693 gctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatattt 24075766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 27416747 - 27416794
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagcc 122  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||    
T  27416747 atttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagcc 27416794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 7385552 - 7385598
Alignment:
Q  212 cttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  7385552 cttttacgctatattttatcatttttggcaactaactctagtattat 7385598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 24075828 - 24075874
Alignment:
Q  212 cttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||||    
T  24075828 cttttatgctatattttatcattcttggcaactaactctagtattat 24075874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 47655660 - 47655615
Alignment:
Q  213 ttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  47655660 ttttacgctatattttatcatttttggcaactaactctagtattat 47655615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 11051015 - 11050899
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || ||||| | | |||| |||| | | |||||||||||  ||||| |||||||| | ||||||||||||  |||  ||||||||||| |    
T  11051015 atttgatgaaccaaatttattcaaaaaaattaatggatcaaattagccctcgaaaaatatttatggtaatgagttaccaaattttagattttcctttacg 11050916  T
Q  174 gtgtttccattcagatt 190  Q
    |||||||| ||||||||    
T  11050915 gtgtttccgttcagatt 11050899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 20473731 - 20473615
Alignment:
Q  64 gctttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaa 161  Q
    |||||||||||| ||||||||| || |||| || | ||| ||| | ||||||||||||||||| |||| | ||||||  ||||| |||||||  ||||      
T  20473731 gctttgtatttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagccccaaaaaattgtttatggccatgatttaccaaactttggg 20473632  T
Q  162 ttttcctttatggtgtt 178  Q
    |||||||||||||||||    
T  20473631 ttttcctttatggtgtt 20473615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 20557822 - 20557938
Alignment:
Q  64 gctttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaa 161  Q
    |||||||||||| ||||||||| || |||| || | ||| ||| | ||||||||||||||||| |||| | ||||||  ||||| |||||||  ||||      
T  20557822 gctttgtatttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagccccaaaaaattgtttatggccatgatttaccaaactttggg 20557921  T
Q  162 ttttcctttatggtgtt 178  Q
    |||||||||||||||||    
T  20557922 ttttcctttatggtgtt 20557938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 49430951 - 49431003
Alignment:
Q  206 accttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||||| ||||||  |||||||||| ||||||||||||||| ||||||||||||    
T  49430951 acctttcttttacactatattttatcatttttggcaactaactctagtattat 49431003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 4485007 - 4484961
Alignment:
Q  212 cttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||| ||||||||||| |||||||| |||||| ||||||||||||    
T  4485007 cttttacgctatattttatcatttttgacaactaactctagtattat 4484961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 6706450 - 6706488
Alignment:
Q  220 ctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  6706450 ctatattttatcatttttggcaactaactctagtattat 6706488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 50031154 - 50031200
Alignment:
Q  212 cttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||| |||||| |||| ||||||||||||||| ||||||||||||    
T  50031154 cttttacgctatactttatcatttttggcaactaactctagtattat 50031200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 258
Target Start/End: Original strand, 44002818 - 44003015
Alignment:
Q  64 gctttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaa 161  Q
    |||||||||||| ||||||||| || ||||||| ||||||  |||| ||||||||||||||| | |||||||||||| ||||||||||||||| |||| |    
T  44002818 gctttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaattagcccccataaaatatttatggtcatgagttaccaagttttgga 44002917  T
Q  162 ttttcctttatggtgtttccattcagattaaccgta-nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    || ||||||| ||||||||  |||| ||| || |||         ||||| |||||| ||| ||||||| ||||||||||||||| ||||||||||||    
T  44002918 ttgtcctttacggtgtttcatttcaaatttactgtattttttcttacctttcttttacgctctattttatcatttttggcaactaactctagtattat 44003015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 258
Target Start/End: Complemental strand, 43342191 - 43342004
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || |||||||||||||| ||||| ||||||||||||||| | |||||||||||| |||||| |||||||  |||||||||| |||||      
T  43342191 atttgatgaaccaaatttaattagaaaacttaacaaaccaaattagcccctgaaaaatatttatggtcatgacttaccaaattttgaatttttctttaca 43342092  T
Q  174 gtgtttccattcagattaaccgta---nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    ||||  ||||||| ||| || |||           || || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  43342091 gtgtccccattcaaatttactgtattttttcttttacatttcttttacgctatattttatcatttttggcaactaactctagtattat 43342004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 19860450 - 19860541
Alignment:
Q  100 aaatttaacgaaccaaattagcc-ccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattcagatt 190  Q
    ||||||||||||||||||||||  |||||||||||||||| | ||||||||||||| |||| ||||||||||| || |||||| ||||||||    
T  19860450 aaatttaacgaaccaaattagcttccagaaaatatttatggttatgagttaccaagttttggattttcctttacggcgtttccgttcagatt 19860541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 35458099 - 35458044
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa 130  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  35458099 atttgatgaatcatatttaattagaaaacttaacgaaccaaattagcccccgaaaa 35458044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 37640676 - 37640572
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    ||||||||||  | ||||||| |||||| |||||||||||||||| |||| ||||| | |||||| |||||||||| |||  |||||||||||||||| |    
T  37640676 atttgatgaacaaaatttaatcagaaaacttaacgaaccaaattaacccctgaaaaatgtttatggtcatgagttaacaaattttgaattttcctttacg 37640577  T
Q  174 gtgtt 178  Q
    |||||    
T  37640576 gtgtt 37640572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 12015782 - 12015692
Alignment:
Q  64 gctttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaa 153  Q
    |||||||||||| ||| ||||| || |||| |||| ||||||| |||||| ||||||||| || |||||||||||| |||||| |||||||    
T  12015782 gctttgtatttaatttaatgaaccaaatttgattaaaaaatttgacgaacgaaattagcctcataaaatatttatggtcatgatttaccaa 12015692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 7473701 - 7473817
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    ||||||||||  | ||||||| |||||| |||  |||||||||||||||| | ||||| |||||| |||||| |||||||  ||| |||||||||||| |    
T  7473701 atttgatgaacaaaatttaatcagaaaacttagtgaaccaaattagcccccgaaaaatgtttatggtcatgaattaccaaattttaaattttcctttacg 7473800  T
Q  174 gtgtttccattcagatt 190  Q
    ||||   ||||||||||    
T  7473801 gtgtccgcattcagatt 7473817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 17481005 - 17481158
Alignment:
Q  109 gaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatggtgtttccattcagattaaccgtannnnnnnn-- 205  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||  ||| |||||| ||||| | |||  ||||||| ||| || |||              
T  17481005 gaaccaaattagcccccgaaaaatatttatgatcatgacttaccaaattttaaatttttctttacgatgtccccattcaaatttactgtattttttcttt 17481104  T
Q  206 -accttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
     || || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  17481105 tacatttcttttacgctatattttatcatttttggcaactaactctagtattat 17481158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 37996896 - 37996979
Alignment:
Q  71 atttatttgatgaatcatatttaattagaaaatttaacgaaccaaattagc-cccagaaaatatttatgatcatgagttaccaa 153  Q
    |||||||||||||| || |||||||  ||||| |||||||| |||||||||  ||| ||||| |||||||| ||||||||||||    
T  37996896 atttatttgatgaaccaaatttaatcggaaaacttaacgaatcaaattagcttccaaaaaatgtttatgataatgagttaccaa 37996979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 35457960 - 35457914
Alignment:
Q  212 cttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  35457960 cttttacgctatattttatcatttttggcaactaactctagtattat 35457914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 43695161 - 43695242
Alignment:
Q  90 tttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaattttccttta 171  Q
    |||||| | ||||| ||||||||||||||||||||| |||||||| | | |||  |||||||||| |||| ||||| |||||    
T  43695161 tttaataaaaaaatataacgaaccaaattagccccaaaaaatattcacggtcaacagttaccaagttttggatttttcttta 43695242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 32497125 - 32497081
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaatta 119  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||    
T  32497125 atttgatgaatcaaatttaatcagaaaacttaacgaaccaaatta 32497081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 32977 - 32861
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaa-tatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    ||||||||||  | ||||||| ||||||  ||||||||||||| |||||| ||||| |||||||| ||||||||||||||  |||||||||||||||| |    
T  32977 atttgatgaacaaaatttaatcagaaaacctaacgaaccaaatcagcccccgaaaaatatttatggtcatgagttaccaaattttgaattttcctttacg 32878  T
Q  174 gtgtttccattcagatt 190  Q
    ||||  |||||||||||    
T  32877 gtgtccccattcagatt 32861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 27825172 - 27825298
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaatt-agaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaaggtttgaatt 163  Q
    |||||||||| ||||||||| || |||||||  | |||||||||||||||||||||||| || |||||||||||| ||| ||||||||||| |||  |||    
T  27825172 tttgtatttaatttgatgaaccaaatttaatccaaaaaatttaacgaaccaaattagccacaaaaaatatttatggtcaggagttaccaagttttagatt 27825271  T
Q  164 ttcctttatggtgtttccattcagatt 190  Q
    || ||||| ||| ||||| ||||||||    
T  27825272 tttctttacggtttttccgttcagatt 27825298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 10683338 - 10683454
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccaga-aaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || |||||||||||||||||||| |||||||||| |||| || |||| |||||| | |||| |||||||  ||| |||||| ||||| |    
T  10683338 atttgatgaaccaaatttaattagaaaatttaacaaaccaaattaacccccgataaatgtttatggtaatgacttaccaaattttaaatttttctttacg 10683437  T
Q  174 gtgtttccattcagatt 190  Q
    ||||  |||||||||||    
T  10683438 gtgtccccattcagatt 10683454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 4146997 - 4147062
Alignment:
Q  89 atttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttaccaag 154  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||| |  ||||||||||||||    
T  4146997 atttaatcaaaaaatttaacgaaccaaattagccccataaaatatttacggacatgagttaccaag 4147062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 30134316 - 30134401
Alignment:
Q  66 tttgtattta-tttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccagaaaatatttatgatcatgagttac 150  Q
    |||||||||| |||||| || || ||||||| | |||| |||||  ||||||||||||| |||||||||| ||| | |||||||||    
T  30134316 tttgtatttaatttgataaaccaaatttaatcaaaaaagttaacataccaaattagcccaagaaaatattgatggttatgagttac 30134401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 4271 - 4458
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagccccag-aaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||||| | ||||| |||||| |||||| |||||||  ||||||||||  |||| |    
T  4271 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcatgacttaccaaattttgaatttttttttacg 4370  T
Q  174 gtgtttccattcagattaaccgta---nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
     |||  ||||||||||| || |||           || || ||||||  |||||||||| ||||||||||||||| ||||||||||||    
T  4371 atgtccccattcagatttactgtattttttcttttacatttcttttacactatattttatcatttttggcaactaactctagtattat 4458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 91719 - 91906
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || ||||| | ||||||||||||||||||||| |||||| | ||| | |||||| |||||| |||||||  |||| ||||||||||| |    
T  91719 atttgatgaaccaaatttattcagaaaatttaacgaaccaaatcagccccgaaaaagtgtttatggtcatgaattaccaaattttggattttcctttacg 91818  T
Q  174 gtgtttccattcagattaaccgta---nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    | ||  ||||||||||| || |||           ||||| |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  91819 gcgtccccattcagatttactgtattttttcttttacctttcttttacgctatattttatcatttttggcaactaactctagtattat 91906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 16994 - 17181
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagcccc-agaaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || ||||| |||| ||| ||||||||||||||||||||| | ||| | |||||| ||||||||||||||  |||| ||||||||||| |    
T  16994 atttgatgaaccaaatttatttaggaaacttaacgaaccaaattagccccgaaaaagtgtttatggtcatgagttaccaaattttggattttcctttacg 17093  T
Q  174 gtgtttccattcagattaaccgta---nnnnnnnnaccttacttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    | ||  ||||||||||| || |||           ||||| |||||| ||||||||||| |||||||| | |||| ||||||||||||    
T  17094 gcgtccccattcagatttactgtatttttgttttcacctttcttttacgctatattttatcatttttgactactaactctagtattat 17181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 37879 - 37982
Alignment:
Q  75 atttgatgaatcatatttaattagaaaatttaacgaaccaaattagcc-ccagaaaatatttatgatcatgagttaccaaggtttgaattttcctttatg 173  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||| ||  ||||| |||||| | | || |||||||  |||||||||| ||||| |    
T  37879 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcctccgaaaaatgtttatggtaacgacttaccaaattttgaatttttctttacg 37978  T
Q  174 gtgt 177  Q
    ||||    
T  37979 gtgt 37982  T

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Target: scaffold0068; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 38028 - 38074
Alignment:
Q  212 cttttatgctatattttaacatttttggcaactagctctagtattat 258  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  38028 cttttacgctatattttatcatttttggcaactaactctagtattat 38074  T

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Target: scaffold0184 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 9606 - 9560
Alignment:
Q  140 tcatgagttaccaaggtttgaattttcctttatggtgtttccattca 186  Q
    ||||||||||||||| |||||||||| ||||| ||||||||| ||||    
T  9606 tcatgagttaccaagttttgaatttttctttacggtgtttcctttca 9560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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