View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_6 (Length: 668)
Name: NF16817_low_6
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 598; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 7 - 652
Target Start/End: Complemental strand, 2567228 - 2566580
Alignment:
| Q |
7 |
tagattatacttttcatacatctttctattctcataagggaatgatacaataaacttcttgcactttgtaggctggacatcatgcacaggaagattgcgg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2567228 |
tagattatacttttcatacatctttctattctcataagggaatgatacaataaacttcttgcactttgtaggctggacatcatgcacaggaagattgcgg |
2567129 |
T |
|
| Q |
107 |
cgaagaacttggacaacttatttatggaataataagaaaaaagaactgaacatataaatttttgtagttaaattactacaatttaaaacttttgaagttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2567128 |
cgaagaacttggacaacttatttatggaataataagaaaaaagaactgaaaatataaatttttgtagttaaattactacaatttaaaacttttgaagttt |
2567029 |
T |
|
| Q |
207 |
acatctgaaatttaacctgtgtaggccaagtatatattcaaacacatatattataaacatttttgtttatgttgtcttgttatattcaacatgatattgc |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2567028 |
acatctgaaatttaacctgtgtaggccaagtatatattcaaacacatatattataaacatttttgtttatgttgtcttgttatattcaacatgatattgc |
2566929 |
T |
|
| Q |
307 |
aattaaaattatgaaatgcagatattcaaatccaaatttctatagggaatgtcataaggcaagcaaaaaatgaagtttctgcaagaattgcattgcaact |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2566928 |
aattaaaattatgaaatgcagatattcaaatccaaatttctatagggaatgtcataaggcaagcaaaaaatgaagtttctgcaagaattgcattgcaact |
2566829 |
T |
|
| Q |
407 |
tgattaataatacactctttatttagctttatttctccacataatggaggccaataaaataaaac---attaactagataggcaagagacatttggaaaa |
503 |
Q |
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| T |
2566828 |
tgattaatgatacactctttatttagctttatttctccacataatggaggccaataaaataaaacattattaactagataggcaagagacatttggaaaa |
2566729 |
T |
|
| Q |
504 |
gtatttctaactgttccatgagcatttctacnnnnnnntgaagtcttttttcctgcttgagcagctacaatgttattttgatccaatagaatatcgaaac |
603 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
2566728 |
gtatttctaactgttccatgagcatttctacaaaaaaatgaagtcttttttcctgcttgagtagctacaatgttattttgatccaatagaatattgaaac |
2566629 |
T |
|
| Q |
604 |
aaccaggggagctacaatttaaattaacagctatcttgctagcagaagt |
652 |
Q |
| |
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| T |
2566628 |
aaccaggggagctacaatttaaattaacagctatcttgctagcagaagt |
2566580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 306 - 652
Target Start/End: Complemental strand, 2557103 - 2556754
Alignment:
| Q |
306 |
caattaaaattatgaaatgcagatattcaaatccaaatttctatagggaatgtcataaggcaagcaaaaaatgaagtttctgcaagaattgcattgcaac |
405 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2557103 |
caattaaaattaggaaatgcagatattcaaatcaaaatttggatagggaatgtcacaaggcaagcaaaaaatgaagtttctgcatgaattgcattgcaac |
2557004 |
T |
|
| Q |
406 |
ttgattaata-atacactctttatttagc--tttatttctccacataatggaggccaataaaataaaacattaactagataggcaagagacatttggaaa |
502 |
Q |
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||||||||| ||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
2557003 |
ttgattaatggatacactgtttatttaacaatttatttctccgcataatggaggccaataaaataaaacattaattagatagacaagagacatttggaaa |
2556904 |
T |
|
| Q |
503 |
agtatttctaactgttccatgagcatttctacnnnnnnntgaagtcttttttcctgcttgagcagctacaatgttattttgatccaatagaatatcgaaa |
602 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
2556903 |
agtatttctaactgttccatgagcatttctacaaaaaaatgaagtcatttttcctgcttgagtagctacaatgttattttgatccaatagaatgtcgaaa |
2556804 |
T |
|
| Q |
603 |
caaccaggggagctacaatttaaattaacagctatcttgctagcagaagt |
652 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2556803 |
caaccagaggagctacaatttaaattaacagctatcttgctagcagaagt |
2556754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 2557367 - 2557130
Alignment:
| Q |
7 |
tagattatacttttcatacatctttctattctcataagggaatgatacaataaacttcttgcactttgtaggctggacatcatgcacaggaagattgcgg |
106 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
2557367 |
tagattatactctccatacatctttctgttctcataagggaatgttacaataaacttcttgctctttataggctggacatcatgcacaggaagattgcgg |
2557268 |
T |
|
| Q |
107 |
cgaagaacttggacaacttatttatggaataataagaaaaaagaactgaacatataaatttttgtagttaaattactacaatttaaaacttttgaagttt |
206 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||| ||||||||| |
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| T |
2557267 |
cgaagaacttggacaactt-tttatggaaaaataagaaaaaagaactaaacatataaatttttgtagttgaattactacagttcaaaactcttgaagttt |
2557169 |
T |
|
| Q |
207 |
acatctgaaatttaacctgtgtaggccaagtatatattc |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2557168 |
acatcttaaatttaacctgtgtaggccaagtatatattc |
2557130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 469 - 627
Target Start/End: Complemental strand, 2551327 - 2551169
Alignment:
| Q |
469 |
aacattaactagataggcaagagacatttggaaaagtatttctaactgttccatgagcatttctacnnnnnnntgaagtcttttttcctgcttgagcagc |
568 |
Q |
| |
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|||||||| |||||||||||| |||| |||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||| |||||||| |
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| T |
2551327 |
aacattaattagataggcaagggacaattggaatagtatttctaactattccatgagcatttctacaaaaagaggaagtcttctttcctggttgagcaga |
2551228 |
T |
|
| Q |
569 |
tacaatgttattttgatccaatagaatatcgaaacaaccaggggagctacaatttaaat |
627 |
Q |
| |
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|||||||||||||||||| |||||||| | |||||||||| || ||||| ||||||| |
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| T |
2551227 |
tacaatgttattttgatctaatagaatcttaaaacaaccagaagaactacactttaaat |
2551169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 3276809 - 3276668
Alignment:
| Q |
19 |
ttcatacatctttctattctcataagggaatgatacaataaacttcttgcactttgtaggctggacatcatgcacaggaagattgcggcgaagaacttgg |
118 |
Q |
| |
|
|||||| ||||| ||||||| | ||||||||||||| || ||||||||| |||| ||||||||||||||||| |||||||||||| ||||||| | ||| |
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|
| T |
3276809 |
ttcataaatcttcctattcttacaagggaatgatactatcaacttcttgttctttataggctggacatcatgcgcaggaagattgcagcgaagagcgtgg |
3276710 |
T |
|
| Q |
119 |
acaacttatttatggaataataag-aaaaaagaactgaacat |
159 |
Q |
| |
|
||| ||||||||||| ||| || | ||||||||||| ||||| |
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| T |
3276709 |
acaccttatttatgggatagtatgcaaaaaagaactaaacat |
3276668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 625
Target Start/End: Complemental strand, 2543838 - 2543698
Alignment:
| Q |
485 |
gcaagagacatttggaaaagtatttctaactgttccatgagcatttctacnnnnnnntgaagtcttttttcctgcttgagcagctacaatgttattttga |
584 |
Q |
| |
|
||||| ||||||||||| |||||||||| | |||||||| |||||| ||| |||| ||| ||||||| |||||||| |||||||| ||||| |
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|
| T |
2543838 |
gcaagggacatttggaacagtatttctagcagttccatgggcatttgtacaaaaagaagaagccttctttcctggttgagcagaaacaatgttgttttgt |
2543739 |
T |
|
| Q |
585 |
tccaatagaatatcgaaacaaccaggggagctacaatttaa |
625 |
Q |
| |
|
||||||| ||| || ||||||||| |||||||||||||| |
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|
| T |
2543738 |
tccaataaaatgtcataacaaccagaagagctacaatttaa |
2543698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 2544035 - 2543971
Alignment:
| Q |
179 |
ttactacaatttaaaacttttgaagtttacatctgaaatttaacctgtgtaggccaagtatatat |
243 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
2544035 |
ttactacaatttaaaacttatgaagtttacggtagaaatttaacatgggtaggccaagtatatat |
2543971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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