View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_60 (Length: 263)

Name: NF16817_low_60
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_60
NF16817_low_60
[»] chr4 (9 HSPs)
chr4 (109-252)||(28885502-28885645)
chr4 (6-76)||(14612281-14612351)
chr4 (1-76)||(32335915-32335990)
chr4 (1-75)||(14784697-14784771)
chr4 (6-70)||(47645513-47645577)
chr4 (1-76)||(33978822-33978897)
chr4 (18-75)||(7540245-7540302)
chr4 (6-75)||(40259709-40259778)
chr4 (7-49)||(25618771-25618813)
[»] chr5 (9 HSPs)
chr5 (1-76)||(38545415-38545490)
chr5 (13-75)||(18739807-18739869)
chr5 (1-76)||(20732670-20732744)
chr5 (7-76)||(16287577-16287646)
chr5 (7-76)||(42757550-42757619)
chr5 (1-77)||(26214093-26214169)
chr5 (1-76)||(38322291-38322366)
chr5 (7-50)||(8674000-8674043)
chr5 (40-76)||(19867009-19867045)
[»] scaffold0005 (2 HSPs)
scaffold0005 (6-76)||(205026-205096)
scaffold0005 (1-75)||(54959-55033)
[»] chr7 (7 HSPs)
chr7 (1-76)||(38722942-38723017)
chr7 (1-76)||(45782161-45782237)
chr7 (1-76)||(24730822-24730897)
chr7 (1-76)||(9154437-9154512)
chr7 (6-75)||(14196967-14197036)
chr7 (1-74)||(46281827-46281899)
chr7 (18-76)||(35533486-35533542)
[»] chr2 (5 HSPs)
chr2 (1-76)||(11919737-11919812)
chr2 (6-76)||(35844808-35844878)
chr2 (6-76)||(19618917-19618987)
chr2 (8-76)||(28319152-28319219)
chr2 (63-92)||(75076-75105)
[»] scaffold0064 (1 HSPs)
scaffold0064 (7-76)||(54461-54530)
[»] chr3 (5 HSPs)
chr3 (8-76)||(24312810-24312878)
chr3 (6-76)||(48743277-48743347)
chr3 (1-66)||(32463558-32463623)
chr3 (1-76)||(2683038-2683114)
chr3 (7-53)||(3820996-3821042)
[»] chr1 (3 HSPs)
chr1 (8-76)||(23279739-23279807)
chr1 (1-77)||(18106847-18106923)
chr1 (1-76)||(16858419-16858496)
[»] chr8 (3 HSPs)
chr8 (6-74)||(32731372-32731440)
chr8 (6-64)||(30199466-30199524)
chr8 (18-71)||(8137609-8137662)
[»] chr6 (4 HSPs)
chr6 (1-76)||(19176468-19176543)
chr6 (28-76)||(13118483-13118531)
chr6 (7-53)||(23124864-23124910)
chr6 (4-48)||(9620538-9620582)
[»] scaffold0173 (1 HSPs)
scaffold0173 (6-76)||(22877-22947)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 109 - 252
Target Start/End: Original strand, 28885502 - 28885645
Alignment:
Q  109 ttaatttgactgccggactgcagagtttcaaaggttccacaaatttgcatagttctcactgaaagagttggaaaaaactagaaattttctccttgttttg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  28885502 ttaatttgactgccggactgcagagtttcaaaggttccacaaattggcatagttctaagtgaaagagttggaaaaaactagaaattttctccttgttttg 28885601  T
Q  209 taggaaagtttaagtgaatattcagttagctcaagcatattcat 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28885602 taggaaagtttaagtgaatattcagttagctcaagcatattcat 28885645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 14612281 - 14612351
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  14612281 tttttggtaaagataaggggccaaaagagcatatttccctaaacatggcaaaattagggggtcaaaattgc 14612351  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 32335990 - 32335915
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||||||| ||||  |||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  32335990 gcaatttttttgtaaagataataggccaaaagagcatatatccctaaacatggcaaaattaaggggtcaaaattgc 32335915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 14784697 - 14784771
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattg 75  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| ||||| |||||||    
T  14784697 gcaaattttttgtaaagataaggggtcaaaaaaacatatttccctaaacatagcaaaattagggggttaaaattg 14784771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 47645577 - 47645513
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaa 70  Q
    ||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  47645577 tttttggtaaagataaggggccaaaagagcatattttcctaaacatggcaaaattagggggtcaa 47645513  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33978897 - 33978822
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||||||| ||||| ||||||||   |||||||| ||||||||||||| |||| ||||||||||||||    
T  33978897 gcaacttttttgtaaagataagaggccaaaaatgcatatttcgctaaacatggcaatattagggggtcaaaattgc 33978822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 7540245 - 7540302
Alignment:
Q  18 ataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattg 75  Q
    |||| ||| ||||||| |||||||||||||||||||||||| || |||||||||||||    
T  7540245 ataaagggtcaaaagagcatatttccctaaacatggcaaaaatagggggtcaaaattg 7540302  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 40259709 - 40259778
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattg 75  Q
    ||||||||||| |||||||| |||||   |||||||| ||||||||||||| |||| |||||||||||||    
T  40259709 ttttttgtaaagataagggggcaaaaatgcatatttcgctaaacatggcaatattagggggtcaaaattg 40259778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 25618771 - 25618813
Alignment:
Q  7 tttttgtaaatataaggggccaaaagaacatatttccctaaac 49  Q
    |||||||||| |||||||| ||||||| |||||||||||||||    
T  25618771 tttttgtaaagataaggggtcaaaagagcatatttccctaaac 25618813  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38545415 - 38545490
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  38545415 gcaatttttttgtaaagataatgggccaaaagagcatatatccctaaacatggcaaaattaaggggtcaaaattgc 38545490  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 18739869 - 18739807
Alignment:
Q  13 taaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattg 75  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18739869 taaagataaagggccaaaagagcatatttccctaaacatggcaaaattaaggggtcaaaattg 18739807  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20732670 - 20732744
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||| ||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  20732670 gcaactttttggtaaagataaggg-ccaaaagagcatatttccctaaacatggcaaaattagggggtcaaaattgc 20732744  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 16287646 - 16287577
Alignment:
Q  7 tttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||||||||| ||||||| |||||||| |||||||  |||||||||||||||||| ||||||||||||||    
T  16287646 tttttgtaaagataagggaccaaaagagcatatttttctaaacatggcaaaattagggggtcaaaattgc 16287577  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 42757619 - 42757550
Alignment:
Q  7 tttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||||||||| |||| ||| |||||||||| |||| ||||||||||||||||||| ||||| ||||||||    
T  42757619 tttttgtaaagataaagggtcaaaagaacaaattttcctaaacatggcaaaattagggggttaaaattgc 42757550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26214169 - 26214093
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgct 77  Q
    |||| ||||||| ||| ||||||||| |||| ||||||||| |||||||||| ||||| || |||||||||||||||    
T  26214169 gcaacttttttgaaaagataaggggcaaaaaaaacatatttacctaaacatgacaaaaatagggggtcaaaattgct 26214093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38322366 - 38322291
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||||||| ||||| || ||||| |  | |||||||||||||||||||||||| ||||||||||||||    
T  38322366 gcaacttttttgtaaagataagaggtcaaaaaactaaatttccctaaacatggcaaaattagggggtcaaaattgc 38322291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 8674000 - 8674043
Alignment:
Q  7 tttttgtaaatataaggggccaaaagaacatatttccctaaaca 50  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||    
T  8674000 tttttgtaaagataaggggtcaaaagagcatatttccctaaaca 8674043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 19867009 - 19867045
Alignment:
Q  40 ttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  19867009 ttccctaaacatggcaaacttagggggtcaaaattgc 19867045  T

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Target: scaffold0005 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 205096 - 205026
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  205096 tttttggtaaagataaggggccaaaagagcatatttccctaaacatggcaaaattagggggtcaaaattgc 205026  T

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Target: scaffold0005; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 55033 - 54959
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattg 75  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| ||||| |||||||    
T  55033 gcaaattttttgtaaagataaggggtcaaaaaaacatatttccctaaacatagcaaaattagggggttaaaattg 54959  T

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Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38722942 - 38723017
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||| ||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  38722942 gcaactttttggtaaagataagggtccaaaagagcatatttccctaaacatggcaaaattagggggtcaaaattgc 38723017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 45782161 - 45782237
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaa-acatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||||||| ||||||| | |||||| ||||||| ||||| |||||||||||||||||||||||||||||    
T  45782161 gcaatttttttgtaaagataagggacgaaaagagcatattttcctaacacatggcaaaattaaggggtcaaaattgc 45782237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 24730897 - 24730822
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||||||| ||| |||||||||||| ||||||||| |||||||| ||||||||  |||||||||||||    
T  24730897 gcaacttttttgtaaagatacggggccaaaagagcatatttccttaaacatgacaaaattagagggtcaaaattgc 24730822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9154437 - 9154512
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||| ||| ||||||| |||||||| |||||||| ||||||||||||||| || |||| |||||||||    
T  9154437 gcaacttttttgcaaagataagggaccaaaagagcatatttctctaaacatggcaaaaatagggggccaaaattgc 9154512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 14196967 - 14197036
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattg 75  Q
    ||||||||||| |||| ||| ||||||| |||||||||||||||| |||||||||| | ||| |||||||    
T  14196967 ttttttgtaaagataaagggtcaaaagagcatatttccctaaacaaggcaaaattaggcggtaaaaattg 14197036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46281827 - 46281899
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaatt 74  Q
    |||| ||||||||||| ||||  || ||||||||||||||| ||| |||||||||||||||  |||||||||||    
T  46281827 gcaacttttttgtaaagataaccggtcaaaagaacatattt-cctcaacatggcaaaattagagggtcaaaatt 46281899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 35533542 - 35533486
Alignment:
Q  18 ataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    ||||||||| |||| ||||||||| |||||||||||||||| | |||||||||||||||    
T  35533542 ataaggggcaaaaa-aacatatttacctaaacatggcaaaaat-aggggtcaaaattgc 35533486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11919812 - 11919737
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  11919812 gcaacttttttgtaaagataagggggcaaaagagcatattttcctaaacatggcaaaattagggggtcaaaattgc 11919737  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 35844878 - 35844808
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    ||||||||||| |||||||||||||||| |||||||  ||||||||| |||||||| ||||||||||||||    
T  35844878 ttttttgtaaagataaggggccaaaagagcatatttttctaaacatgacaaaattagggggtcaaaattgc 35844808  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 19618917 - 19618987
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    ||||||||||| ||||||||  |||||| |||||||||||| ||  |||||||||| ||||| ||||||||    
T  19618917 ttttttgtaaagataaggggttaaaagagcatatttccctacacgaggcaaaattagggggtaaaaattgc 19618987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 28319152 - 28319219
Alignment:
Q  8 ttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    ||||||||| ||||||  |||||| | ||||||||||||||||||||||| |||  |||||||||||||    
T  28319152 ttttgtaaagataagga-ccaaaaaagcatatttccctaaacatggcaaacttagagggtcaaaattgc 28319219  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 75076 - 75105
Alignment:
Q  63 ggggtcaaaattgctacggtggcaaacata 92  Q
    ||||||||||||||||||||||||||||||    
T  75076 ggggtcaaaattgctacggtggcaaacata 75105  T

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Target: scaffold0064 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 54530 - 54461
Alignment:
Q  7 tttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||||||||| |||||||||||||||| |||||||||||||||| |||||||||| ||||| ||||||||    
T  54530 tttttgtaaagataaggggccaaaagagcatatttccctaaacaaggcaaaattagggggtaaaaattgc 54461  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 24312810 - 24312878
Alignment:
Q  8 ttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    ||||||||| |||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  24312810 ttttgtaaagataaaggggcaaaagagcatattttcctaaacatggcaaaattaaggggtcaaaattgc 24312878  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 48743277 - 48743347
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    ||||||||||| |||| ||| |||||||   ||||||||||||||||||||||||| ||||||||||||||    
T  48743277 ttttttgtaaagataatgggtcaaaagactctatttccctaaacatggcaaaattagggggtcaaaattgc 48743347  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32463558 - 32463623
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaagggg 66  Q
    |||| ||||||||||| |||||||| |||||||   ||||||||||||||||||||||||| ||||    
T  32463558 gcaacttttttgtaaagataaggggtcaaaagactgtatttccctaaacatggcaaaattaggggg 32463623  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2683114 - 2683038
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaa-acatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||||||| ||||||| | |||||| ||||||| ||||| ||||| ||||||||| |||||||||||||    
T  2683114 gcaatttttttgtaaagataagggacgaaaagagcatattttcctaacacatgacaaaattaaagggtcaaaattgc 2683038  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 3821042 - 3820996
Alignment:
Q  7 tttttgtaaatataaggggccaaaagaacatatttccctaaacatgg 53  Q
    |||||||||| |||| ||| ||||||| |||||||||||||||||||    
T  3821042 tttttgtaaagataaagggtcaaaagagcatatttccctaaacatgg 3820996  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 23279739 - 23279807
Alignment:
Q  8 ttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    ||||||||| |||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  23279739 ttttgtaaagataaaggggcaaaagagcatattttcctaaacatggcaaaattaaggggtcaaaattgc 23279807  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18106847 - 18106923
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgct 77  Q
    |||| ||||||| ||| |||||||  ||||||| |||||||||||||||||||||||| || |||||||||||||||    
T  18106847 gcaatttttttgcaaagataagggatcaaaagagcatatttccctaaacatggcaaaaatagggggtcaaaattgct 18106923  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 16858496 - 16858419
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaaga--acatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||||||| ||||||||||||||||  | |||||| |||||||| || ||||||| ||||| ||||||||    
T  16858496 gcaacttttttgtaaagataaggggccaaaagagcatatattttcctaaacaaggtaaaattagggggtaaaaattgc 16858419  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 32731440 - 32731372
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaatt 74  Q
    ||||| ||||| |||||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||    
T  32731440 tttttggtaaagataaggggccaaaagagcatattttcctaaacatggaaaaattagggggtcaaaatt 32731372  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 30199524 - 30199466
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaagg 64  Q
    ||||||||||| ||||||||  |||||| ||||||| ||||||||||||||||||||||    
T  30199524 ttttttgtaaagataaggggttaaaagagcatattttcctaaacatggcaaaattaagg 30199466  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 8137662 - 8137609
Alignment:
Q  18 ataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaa 71  Q
    |||||||| ||||||| ||||||||||||||| |||||||| || |||||||||    
T  8137662 ataagggggcaaaagagcatatttccctaaacgtggcaaaaatatggggtcaaa 8137609  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19176543 - 19176468
Alignment:
Q  1 gcaaattttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||| ||||||||||| |||| | | ||||| | ||||||||||||||||||||||||||| ||||||||||||||    
T  19176543 gcaacttttttgtaaagataatgtgtcaaaatagcatatttccctaaacatggcaaaattatggggtcaaaattgc 19176468  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 13118531 - 13118483
Alignment:
Q  28 aaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    |||||| ||||||||||||||||| | |||| |||||||||||||||||    
T  13118531 aaaagagcatatttccctaaacattgaaaaaataaggggtcaaaattgc 13118483  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 23124864 - 23124910
Alignment:
Q  7 tttttgtaaatataaggggccaaaagaacatatttccctaaacatgg 53  Q
    |||||||||| |||||||| ||||||| ||||||| |||||||||||    
T  23124864 tttttgtaaagataaggggtcaaaagagcatattttcctaaacatgg 23124910  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 9620582 - 9620538
Alignment:
Q  4 aattttttgtaaatataaggggccaaaagaacatatttccctaaa 48  Q
    ||||||||||||| |||||||||||||||| | |||||| |||||    
T  9620582 aattttttgtaaaaataaggggccaaaagagcttatttctctaaa 9620538  T

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Target: scaffold0173 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 22947 - 22877
Alignment:
Q  6 ttttttgtaaatataaggggccaaaagaacatatttccctaaacatggcaaaattaaggggtcaaaattgc 76  Q
    ||||||| ||| ||||||||| |||| ||||||||| |||||||||||||||| || ||||||||||||||    
T  22947 ttttttgcaaagataaggggcaaaaaaaacatatttacctaaacatggcaaaaatagggggtcaaaattgc 22877  T

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