View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_61 (Length: 263)
Name: NF16817_low_61
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_61 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 47385936 - 47385674
Alignment:
| Q |
1 |
atcatcatcaacatcaacatcctcttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagct |
100 |
Q |
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| T |
47385936 |
atcatcatcaacatcaacatcctcttcttgttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagct |
47385837 |
T |
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| Q |
101 |
tgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcg |
200 |
Q |
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| T |
47385836 |
tgaaaacatgatgtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcg |
47385737 |
T |
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| Q |
201 |
ttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactac |
263 |
Q |
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| T |
47385736 |
ttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactac |
47385674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 247
Target Start/End: Original strand, 47373020 - 47373242
Alignment:
| Q |
25 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggtggg |
124 |
Q |
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| T |
47373020 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacagccatggcttctatcagcttgaaagcaagaagtacttggtggg |
47373119 |
T |
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| Q |
125 |
acctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattat |
224 |
Q |
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| T |
47373120 |
accttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaaaagattctgatcctcttatggttgtcaaaggtggtggaaaattct |
47373219 |
T |
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| Q |
225 |
ggatttttggtttcttagtagct |
247 |
Q |
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| T |
47373220 |
gagttttcactttcttagtagct |
47373242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
91 |
tctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacg |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||||||||||| |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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