View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_62 (Length: 257)
Name: NF16817_low_62
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_62 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 31106724 - 31106960
Alignment:
| Q |
21 |
tatataaacatcttcatccaattgggacccaccattgagatgataataatactaagaaaagataactgaattgagaatgaagaataaatatcttggagnn |
120 |
Q |
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| T |
31106724 |
tatataagcatcttcatccaattgggacccaccattgagatgataataatactaggaaaagataactgaattgagaatgaagaataaatatcttggagaa |
31106823 |
T |
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| Q |
121 |
nnnnncgagcgagtaggagaaagaagttataaccaccttgtagcactcttcttgagtcccacatcgatgaatacttaaaatcatacaccaaagtttacct |
220 |
Q |
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| T |
31106824 |
aaaaacgagcgagtaggagaaagaagttataaccaccttgtagcactcttcttgagtcccacatcgatgaatacttaaaatcatacaccaaagtttacct |
31106923 |
T |
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| Q |
221 |
ataaaataatattagtctatatctatacttcatatta |
257 |
Q |
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| T |
31106924 |
ataaaataatattagtctatatctatacttcatatta |
31106960 |
T |
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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 31050641 - 31050702
Alignment:
| Q |
30 |
atcttcatccaattgggacccaccattgagatgataataatactaagaaaagataactgaattga |
94 |
Q |
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| T |
31050641 |
atcttcatccaa---ggacacaccattgagataataataatactaagaaaagagaattgaattga |
31050702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 3355 - 3282
Alignment:
| Q |
21 |
tatataaacatcttcatccaattgggacccaccattgagatgataataata---ctaagaaaagataactgaattga |
94 |
Q |
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| T |
3355 |
tatataagcatcttcatccaa---ggagccaccattgagataataataataatactaagaaaagagaattgaattga |
3282 |
T |
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