View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_66 (Length: 252)

Name: NF16817_low_66
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_66
NF16817_low_66
[»] chr8 (2 HSPs)
chr8 (1-239)||(41739653-41739897)
chr8 (22-58)||(17088591-17088627)
[»] chr1 (4 HSPs)
chr1 (46-219)||(21501077-21501250)
chr1 (46-208)||(8040728-8040889)
chr1 (45-98)||(147029-147082)
chr1 (21-64)||(38825292-38825335)
[»] chr2 (2 HSPs)
chr2 (18-184)||(27082885-27083055)
chr2 (15-214)||(8388244-8388444)
[»] chr3 (6 HSPs)
chr3 (46-208)||(26444921-26445083)
chr3 (17-214)||(2353318-2353515)
chr3 (22-98)||(42253391-42253467)
chr3 (15-58)||(38257440-38257483)
chr3 (22-98)||(19929866-19929942)
chr3 (22-98)||(42256647-42256723)
[»] chr6 (1 HSPs)
chr6 (46-99)||(28746393-28746446)
[»] chr4 (1 HSPs)
chr4 (36-86)||(13010351-13010401)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 41739653 - 41739897
Alignment:
Q  1 ataatcttaacatggtagtataaattagccatgataattatctctaaataataatcaacatatacata------taaacaacaattaaatataagcaaaa 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||| ||||    
T  41739653 ataatcttaacatggtagtataaattagccatgataattatctctaaataataatcaacatatacatatccatataaacaacaattaaatataagtaaaa 41739752  T
Q  95 gagaaggttcaatagacttacctgttcttaatatttttgtataattaggatcctgacatgactctatcaatatccttcaccaacaactcatatctaacct 194  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  41739753 gagaaggttcaatggacttacctgttcttaatatttttgtataattaggatcctgacatgactctatcaatattcttcactaacaactcatatctaacct 41739852  T
Q  195 gcaaaatagtaaacagttatgtaattataacctgaggcgtgatga 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41739853 gcaaaatagtaaacagttatgtaattataacctgaggcgtgatga 41739897  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 17088591 - 17088627
Alignment:
Q  22 aaattagccatgataattatctctaaataataatcaa 58  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  17088591 aaattagtcatgataattatatctaaataataatcaa 17088627  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 21501077 - 21501250
Alignment:
Q  46 aaataataatcaacatatacatataaacaacaattaaatataagcaaaagagaaggttcaatagacttacctgttcttaatatttttgtataattaggat 145  Q
    |||||| ||| |||||||||||||||||| ||||| |||||||||||||||||||| || ||| |||||  ||||||||||| ||||  |||  |||  |    
T  21501077 aaataaaaattaacatatacatataaacatcaattgaatataagcaaaagagaaggatcgataaacttatatgttcttaataattttagatagctagagt 21501176  T
Q  146 cctgacatgactctatcaatatccttcaccaacaactcatatctaacctgcaaaatagtaaacagttatgtaat 219  Q
     ||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||| |||| |||||| ||||    
T  21501177 actgacataactctgtcaatgtccttcaccaacaactcatatgtaacctgcaaaataataaatagttatataat 21501250  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 8040889 - 8040728
Alignment:
Q  46 aaataataatcaacatatacatataaacaacaattaaatataagcaaaagagaaggttcaatagacttacctgttcttaatatttttgtataattaggat 145  Q
    |||||| ||| |||||||||||||||||| ||||| |||||||  ||||||||||| || ||| |||||  ||| ||||||| |||| ||||  |||  |    
T  8040889 aaataaaaattaacatatacatataaacatcaattgaatataaataaaagagaaggatcgataaacttatatgtccttaataattttatatagctagagt 8040790  T
Q  146 cctgacatgactctatcaatatccttcaccaacaactcatatctaacctgcaaaatagtaaac 208  Q
     ||||||| ||||| ||||||| |||||||||||||| |||| |||| ||||||||| |||||    
T  8040789 actgacataactctgtcaatat-cttcaccaacaacttatatgtaacttgcaaaataataaac 8040728  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 147029 - 147082
Alignment:
Q  45 taaataataatcaacatatacatataaacaacaattaaatataagcaaaagaga 98  Q
    |||||||||||||||||||| ||||||  | |||||||||||||| ||||||||    
T  147029 taaataataatcaacatataaatataagaatcaattaaatataagtaaaagaga 147082  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 38825292 - 38825335
Alignment:
Q  21 taaattagccatgataattatctctaaataataatcaacatata 64  Q
    |||||||| || ||||||| ||||||||||||||||||||||||    
T  38825292 taaattagtcaagataattttctctaaataataatcaacatata 38825335  T

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Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 27082885 - 27083055
Alignment:
Q  18 gtataaattagccatgataattatctctaaataataatca---acatatacatataaacaacaattaaatataagcaaaagagaaggttcaatagactta 114  Q
    ||||||||||| ||| |||||||||| ||||||||||| |   |||||||||||| |||| |||||||||||||||||||||||  | |||||| |||||    
T  27082885 gtataaattagtcataataattatctttaaataataataattaacatatacatatgaacatcaattaaatataagcaaaagagatagatcaataaactta 27082984  T
Q  115 cctgttcttaatatttttgtataattaggatc-ctgacatgactctatcaatatccttcaccaacaactca 184  Q
     |||| | || |||||||||||||  ||| ||  |||||||||||||||||||||||||||||||||||||    
T  27082985 tctgtccctagtatttttgtataaccaggttcaatgacatgactctatcaatatccttcaccaacaactca 27083055  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 8388244 - 8388444
Alignment:
Q  15 gtagtataaattagccatgataattatctctaaataataatcaacatatacatataaacaacaattaaatataagcaaaagagaag-gttcaatagactt 113  Q
    |||||||||||||  ||| | ||||||||| || ||||||||||||| ||||||||| || |||| |||||||||||||| | ||  | |||||| ||||    
T  8388244 gtagtataaattattcataagaattatctccaagtaataatcaacatgtacatataatcatcaatcaaatataagcaaaaaaaaaaagatcaataaactt 8388343  T
Q  114 acctgttcttaatatttttgtataattaggatcctgacatgactctatcaatatccttcaccaacaactcatatctaacctgcaaaatagtaaacagtta 213  Q
    |  ||| || ||| || |||||||| |||| |  ||| |  |||||||||| ||| | ||  |||||||||||| |||| ||||||||| ||||| ||||    
T  8388344 atatgtcctaaattttgttgtataactaggttgttgatacaactctatcaacatcttccattaacaactcatatataacttgcaaaataataaaccgtta 8388443  T
Q  214 t 214  Q
    |    
T  8388444 t 8388444  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 26444921 - 26445083
Alignment:
Q  46 aaataataatcaacatatacatataaacaacaattaaatataagcaaaagagaaggttcaatagacttacctgttcttaatatttttgtataattaggat 145  Q
    |||||| ||| |||||||||||||||||| ||||| |||||||||||||||||||| || ||| | ||| |||| |||| || ||||  |||  |||  |    
T  26444921 aaataaaaattaacatatacatataaacatcaattgaatataagcaaaagagaaggatcgataaatttatctgtccttactaattttagatagctagagt 26445020  T
Q  146 cctgacatgactctatcaatatccttcaccaacaactcatatctaacctgcaaaatagtaaac 208  Q
     ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  26445021 actgacataactctatcaatatccttcaccaacaactcatatgtaacctgcaaaataataaac 26445083  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 2353515 - 2353318
Alignment:
Q  17 agtataaattagccatgataattatctctaaataataatcaacatatacata-taaacaacaattaaatataagcaaaagagaaggttcaatagacttac 115  Q
    ||||||||||||  || | ||||||||||||||||||||||||| |||||||  ||| | || ||||||||||||||||||||  | |||||| |||||     
T  2353515 agtataaattagtgataagaattatctctaaataataatcaacacatacatacaaaatatcagttaaatataagcaaaagagagagatcaataaacttat 2353416  T
Q  116 ctgttcttaatatttttgtataattaggatcctgacatgactctatcaatatccttcaccaacaactcatatctaacctgcaaaatagtaaacagttat 214  Q
     || |||||| |||  ||||||| || |  | | | |  |||||||||| || || |||||||||||||||| |||||||||||||| ||||| |||||    
T  2353415 atgctcttaacattgatgtataactaagcacat-atacaactctatcaacattctccaccaacaactcatatgtaacctgcaaaataataaaccgttat 2353318  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 42253391 - 42253467
Alignment:
Q  22 aaattagccatgataattatctctaaataataatcaacatatacatataaacaacaattaaatataagcaaaagaga 98  Q
    ||||||| ||| ||||||||||||||||| |||||||  || ||||||| ||   ||| ||||||||||||||||||    
T  42253391 aaattagtcataataattatctctaaatattaatcaaagtaaacatatagacgtgaataaaatataagcaaaagaga 42253467  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 38257440 - 38257483
Alignment:
Q  15 gtagtataaattagccatgataattatctctaaataataatcaa 58  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||    
T  38257440 gtagaataaattagtcatgataattatctctagataataatcaa 38257483  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 19929866 - 19929942
Alignment:
Q  22 aaattagccatgataattatctctaaataataatcaacatatacatataaacaacaattaaatataagcaaaagaga 98  Q
    ||||||| ||| |||||||||| |||||| |||||||  || ||||||| ||   ||| ||||||||||||||||||    
T  19929866 aaattagtcataataattatctttaaatattaatcaaagtaaacatatacacgtgaatcaaatataagcaaaagaga 19929942  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 42256647 - 42256723
Alignment:
Q  22 aaattagccatgataattatctctaaataataatcaacatatacatataaacaacaattaaatataagcaaaagaga 98  Q
    ||||||| ||| ||||||||||||||||| |||||||  || ||||||| |    ||| ||||||||||||||||||    
T  42256647 aaattagtcataataattatctctaaatattaatcaaagtaaacatatacatgtgaatcaaatataagcaaaagaga 42256723  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 28746446 - 28746393
Alignment:
Q  46 aaataataatcaacatatacatataaacaacaattaaatataagcaaaagagaa 99  Q
    |||||||||||||||||||||||||| || |||| ||| |||||||||||||||    
T  28746446 aaataataatcaacatatacatataaccatcaatcaaacataagcaaaagagaa 28746393  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 13010351 - 13010401
Alignment:
Q  36 aattatctctaaataataatcaacatatacatataaacaacaattaaatat 86  Q
    |||||||||||||||||||||  |||||| ||| ||||| |||||||||||    
T  13010351 aattatctctaaataataatcttcatataaataaaaacatcaattaaatat 13010401  T

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