View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_67 (Length: 251)
Name: NF16817_low_67
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_67 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 9895515 - 9895765
Alignment:
| Q |
1 |
cacagaaaaattgaaatgaaacataaatgtgcttcaccggattcgaaggagaaaacaatagaaaaatgttagtgccaaatgtgattcaaatcacacaccc |
100 |
Q |
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| T |
9895515 |
cacagaaaaattaaaatgaaacataaatgtgcttcacgggattcgaaggggaaaacaatagaaaaatgttagtgccaaatgtgattcaaatcacacaccc |
9895614 |
T |
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| Q |
101 |
atgattagactttacatatcagtcactatttcaataagactgtatattcatataaaagaatagtcaaaggaattcacatgtcaagatattgccatgactc |
200 |
Q |
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| T |
9895615 |
atgattagactttacatatcaggcactatttcaataagactgtatattcatataaaagaatagtcaaaggaattcacatgtcaagatattgccatgactc |
9895714 |
T |
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| Q |
201 |
taagctcaagcttaaaaatctggataccatcactatctactcttcagacca |
251 |
Q |
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| T |
9895715 |
taagctcaagcttaaaaatctggataccatcactatctactcttcagacca |
9895765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 10519011 - 10519139
Alignment:
| Q |
83 |
gattcaaatcacacacccatgattagactttacatatcagtcactatttcaataagactgtat-attcatataaaagaatagtcaaaggaattcacatgt |
181 |
Q |
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| T |
10519011 |
gattcaaatcacacacc-atgattagacttcacatatcaagc--tattgcaataagactgaagcattcatacaaaagaaaaatgaaaagaattcacatgt |
10519107 |
T |
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| Q |
182 |
caag--atattgccatgactctaagctcaagc |
211 |
Q |
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| T |
10519108 |
caagatatattgacatgactataagctgaagc |
10519139 |
T |
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