View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_68 (Length: 250)
Name: NF16817_low_68
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 47648245 - 47648026
Alignment:
| Q |
19 |
tatgttgtttaacttctatttttccttcaatgtgagatttctcattcaaactttgatacaacaataattctttccctcaaatttgagtcacacttcacac |
118 |
Q |
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| T |
47648245 |
tatgttgtttaacttctatttttccttcaatgtgagatttctcattcagactttgatacaacaataattctttccctcaaatttgagtcacacttcacac |
47648146 |
T |
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| Q |
119 |
aacaatgagaggaacataaataatatagagatnnnnnnnttgtgggtttgatacattgagtatcccataattgatgcacctaatccatatttagtcttag |
218 |
Q |
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| T |
47648145 |
aacaatgagaggaacataaataatatagagataaaaaaattgtgggtttgatacattgagtatcccataattgatgcacccaatccatatttattcttag |
47648046 |
T |
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| Q |
219 |
actattactttttccaccct |
238 |
Q |
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|||||||||||||||||||| |
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| T |
47648045 |
actattactttttccaccct |
47648026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 47648449 - 47648313
Alignment:
| Q |
14 |
acttgtatgttgtttaacttctatttttccttcaatgtgagatttctcattcaaactttgatacaacaataattctttccctcaaatttgagtcacactt |
113 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
47648449 |
acttatatgttgtttaacttttatttttccttcaatgtgagatttctcatccagactttgatacaccagtaattctttccctcaaatttgagtcacactt |
47648350 |
T |
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| Q |
114 |
cacacaacaatgagaggaacataaataatatagagat |
150 |
Q |
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| T |
47648349 |
cacacaacaatgagaggaacataaataatatagagat |
47648313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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