View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_7 (Length: 653)
Name: NF16817_low_7
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_7 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 216 - 581
Target Start/End: Complemental strand, 40790 - 40426
Alignment:
| Q |
216 |
atgttatgatttgatatgataaaaggtactgttatattgaaatgatagtaaaaagataataatctgaatattattgatggaaaaatggttaaaaccaatt |
315 |
Q |
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| T |
40790 |
atgttatgatttgatatgataataggtactgttatattgaaatgacagtaaaatgataataatctaaatattattgatggaaaaatggttaaaaccaatt |
40691 |
T |
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| Q |
316 |
gaagaaaggtacagggaatgaaatgatagtgcagaaaagcataaagcttcannnnnnnnnnnnnnccatatttctaccaaatattattccccccttaaca |
415 |
Q |
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| T |
40690 |
gaagaaaggtacagggaatgaaatgatagtgcagaaaagcataaagcttaaagagagagagagagccataattctaccaaatattattccccc-ttaaca |
40592 |
T |
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| Q |
416 |
atgcaaatgattgtcctatttaacagagtcctcagtgaactttctgttaggaatcctatgcctcattccacgtcttggtccctgtatctgtggattatgt |
515 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| || |
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| T |
40591 |
atgctaatgattgtcctatttaacagagtcctcattgaactttctgttaggaatcatatgcctcattccacgtcttggtccctggatctgtggattacgt |
40492 |
T |
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| Q |
516 |
gacatctgtccttcctcaccttctgcattagttactgcagtaattaccttggtcttatccataaca |
581 |
Q |
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| T |
40491 |
gacatctgtccttcctctccttctgcattagttactgcagtaatttccttggtcttatccataaca |
40426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 217 - 581
Target Start/End: Complemental strand, 45619 - 45258
Alignment:
| Q |
217 |
tgttatgatttgatatgataaaaggtactgttatattgaaatgatagtaaaaagataataatctgaatattattgatggaaaaatggttaaaaccaattg |
316 |
Q |
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| T |
45619 |
tgttatgatttgatatgataataggtactgttatattgaaatgacagtaaaatgataataatctaaatattattgatggaaaaatggttaaaaccaattg |
45520 |
T |
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| Q |
317 |
aagaaaggtacagggaatgaaatgatagtgcagaaaagcataaagcttcannnnnnnnnnnnnnccatatttctaccaaatattattccccccttaacaa |
416 |
Q |
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| T |
45519 |
aagaaaggtacagggaatgaaatgatagtgcagaaaagcataaagctttaagagagagagag--ccataattctaccaaatattattccccc-ttaacaa |
45423 |
T |
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| Q |
417 |
tgcaaatgattgtcctatttaacagagtcctcagtgaactttctgttaggaatcctatgcctcattccacgtcttggtccctgtatctgtggattatgtg |
516 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
45422 |
tgctaatgattgtcctatttaacagagtcctcattgaactttctgttaggaatcatatgcctcattccacgtcttggtccctggatctgtggattacgtg |
45323 |
T |
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| Q |
517 |
acatctgtccttcctcaccttctgcattagttactgcagtaattaccttggtcttatccataaca |
581 |
Q |
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| T |
45322 |
acatctgtccttcctctccttctgcattagttactgcagtaatttccttggtcttatccataaca |
45258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 46381477 - 46381296
Alignment:
| Q |
36 |
aatgtttccgaattgtaggagtgattatataaatttaaatgcaatccttatgttttatttttcgttataaaaaacattttggacgaagtaaactttagtt |
135 |
Q |
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| T |
46381477 |
aatgtttccgaattgtaggagtgattatataaatttaaatgcaatccttatgttttatttttcgttataaaaaacattttggacgaagtaaactttagtt |
46381378 |
T |
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| Q |
136 |
cagccactcaagctttgaaaataattgaatgaactcgtagcacacaaaatatttgtcagttcacaaactacatgtgcattat |
217 |
Q |
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| T |
46381377 |
cagccactcaagctttgaaaataattgaatgaactcgtagcacacaaaatatttgtcagttcacaaactacatgtgtattat |
46381296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 583 - 634
Target Start/End: Complemental strand, 46381300 - 46381249
Alignment:
| Q |
583 |
attattagcattaaagatgccaattcatacgtgcctgaccaagatagtggtt |
634 |
Q |
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| T |
46381300 |
attattagcattaaagatgccaattcatacgtgcctgaccaagatagtggtt |
46381249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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