View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_70 (Length: 248)

Name: NF16817_low_70
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_70
NF16817_low_70
[»] chr6 (10 HSPs)
chr6 (3-230)||(31106370-31106597)
chr6 (45-176)||(31094776-31094907)
chr6 (41-176)||(31050414-31050544)
chr6 (108-224)||(31042820-31042939)
chr6 (45-129)||(21181570-21181654)
chr6 (52-115)||(21150284-21150347)
chr6 (53-112)||(21267171-21267230)
chr6 (83-129)||(21190542-21190588)
chr6 (81-129)||(21200822-21200870)
chr6 (52-120)||(21314582-21314650)
[»] scaffold0202 (1 HSPs)
scaffold0202 (41-181)||(3488-3628)
[»] scaffold0016 (2 HSPs)
scaffold0016 (52-122)||(65187-65257)
scaffold0016 (78-125)||(62015-62062)
[»] scaffold0272 (1 HSPs)
scaffold0272 (78-129)||(3441-3492)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 31106597 - 31106370
Alignment:
Q  3 gaatttcaacaccagtgcacctcttatgtatgtgacagtgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31106597 gaatttcaacaccagtgcacctcttatgtatgtgacagtgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaa 31106498  T
Q  103 tgcattatgtatttaccattatcatattatatggtccaagtcttcaacttacgtaacttgcacaaatagagagacggtggtgtacaaggaagcgaatgca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  31106497 tgcattatgtatttaccattatcatattatatggtccaagtcttcaacttacgtgacttgcacaaatagagagacggtggtgttcaaggaagcgaatgca 31106398  T
Q  203 acgatgacaaggttatgaacgcaggagc 230  Q
    ||||||||||||||||||||||||||||    
T  31106397 acgatgacaaggttatgaacgcaggagc 31106370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 31094776 - 31094907
Alignment:
Q  45 gatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatattatatggtccaagtc 144  Q
    ||||||||||||||||||||||||||| |||  || |||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  31094776 gatgatacttttttagatgcacatgaagcaccgtcgcatttaacaaaaccattttaaatacattatgtatttcccatgatcatattatatggtccaagtc 31094875  T
Q  145 ttcaacttacgtaacttgcacaaatagagaga 176  Q
    ||||||||| |||||| |||||||||||||||    
T  31094876 ttcaacttaagtaactagcacaaatagagaga 31094907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 31050544 - 31050414
Alignment:
Q  41 tgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatattatatggtcca 140  Q
    ||||||||||  ||||||||||||||||||| |||| |     ||||||||| |||||||||| ||||||||||| || || |||||| |||||||||||    
T  31050544 tgacgatgatgtttttttagatgcacatgaagcactgt-----ttaacaaaaccattttaaatacattatgtattaactatgatcatactatatggtcca 31050450  T
Q  141 agtcttcaacttacgtaacttgcacaaatagagaga 176  Q
    ||||||||||||  |||||| |||||||||||||||    
T  31050449 agtcttcaacttgagtaactagcacaaatagagaga 31050414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 31042939 - 31042820
Alignment:
Q  108 tatgtatttaccattatcatattatatggtccaagtcttcaa---cttacgtaacttgcacaaatagagagacggtggtgtacaaggaagcgaatgcaac 204  Q
    |||||||||| ||| |||||||||||||||||||||||| ||   |||  |||||||||||||||||||||||||||| || | |||||| | |||||||    
T  31042939 tatgtatttatcatgatcatattatatggtccaagtctttaattacttctgtaacttgcacaaatagagagacggtggcgtgcgaggaagaggatgcaac 31042840  T
Q  205 gatgacaaggttatgaacgc 224  Q
    ||  ||||||||| ||||||    
T  31042839 gactacaaggttacgaacgc 31042820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 21181570 - 21181654
Alignment:
Q  45 gatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatat 129  Q
    |||||| ||||||||||||| ||||||||| | |||||||||||| ||||||||| ||| |||||  | ||||||||||||||||    
T  21181570 gatgatgcttttttagatgctcatgaaacattgtcacatttaacataatcatttttaatacattaattgtttaccattatcatat 21181654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 21150284 - 21150347
Alignment:
Q  52 cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatt 115  Q
    |||| |||||||||||||||||||| |||||||||||| ||||| ||||||| |||||| ||||    
T  21150284 ctttattagatgcacatgaaacactctcacatttaacataatcaatttaaatacattatatatt 21150347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 21267171 - 21267230
Alignment:
Q  53 ttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgt 112  Q
    |||||||||||||||| ||||||  |||| || |||| ||||||||||||||||||||||    
T  21267171 ttttttagatgcacataaaacaccgtcactttcaacataatcattttaaatgcattatgt 21267230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 21190542 - 21190588
Alignment:
Q  83 tttaacaaaatcattttaaatgcattatgtatttaccattatcatat 129  Q
    ||||||||||||||||||||  |||||||||||| ||||||| ||||    
T  21190542 tttaacaaaatcattttaaacacattatgtatttgccattattatat 21190588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 21200822 - 21200870
Alignment:
Q  81 catttaacaaaatcattttaaatgcattatgtatttaccattatcatat 129  Q
    ||||||| | ||||||||| ||| ||||||||| |||||||||||||||    
T  21200822 catttaagagaatcattttgaatacattatgtacttaccattatcatat 21200870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 21314582 - 21314650
Alignment:
Q  52 cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttacca 120  Q
    |||||||| ||||| || ||||| | || || |||||| |||||||| |||||||||||| ||||||||    
T  21314582 cttttttatatgcatattaaacattgtcccacttaacagaatcatttcaaatgcattatgaatttacca 21314650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 3488 - 3628
Alignment:
Q  41 tgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatattatatggtcca 140  Q
    ||||||||||||||||||||| ||||||||| ||||  |||||||||||||| |||||||||| |||||||||||| |||| ||||||||||| ||||||    
T  3488 tgacgatgatacttttttagaagcacatgaagcactgccacatttaacaaaaccattttaaatacattatgtatttcccatgatcatattataaggtcca 3587  T
Q  141 agtcttcaacttacgtaacttgcacaaatagagagacggtg 181  Q
    ||||||||||||  |||||| |||||||| |||||| ||||    
T  3588 agtcttcaacttcagtaactagcacaaatggagagatggtg 3628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 65257 - 65187
Alignment:
Q  52 cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatttaccatt 122  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||    
T  65257 cttttttaaatgcacatgaaacactatcacatttaacataatcattgtaaatacattatatatttaccatt 65187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 62062 - 62015
Alignment:
Q  78 tcacatttaacaaaatcattttaaatgcattatgtatttaccattatc 125  Q
    ||||||||||||||||||||| |||| ||| ||| |||||||||||||    
T  62062 tcacatttaacaaaatcatttcaaatacatgatgaatttaccattatc 62015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 3492 - 3441
Alignment:
Q  78 tcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatat 129  Q
    |||||||||||| ||||||||| ||| |||||||||||||| ||||||||||    
T  3492 tcacatttaacagaatcattttgaatacattatgtatttacaattatcatat 3441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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