View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_73 (Length: 236)
Name: NF16817_low_73
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 6428043 - 6428228
Alignment:
| Q |
35 |
caaatacaatggagaatcgttgtttgaagttttaatatttcatggtgagaccttatgcgagaaagcgggctcctattttgtaagaaagtgtggacaaggt |
134 |
Q |
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| T |
6428043 |
caaatacaatggagaatcattgtttgaagttttaatatttcatggtgagaccttatgcgagaaagcgggctcctattttgtaagaaagtgtggacaaggt |
6428142 |
T |
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| Q |
135 |
catactgagcaagagggcaacaaggcaaaggttgcaaagaattctgttgaagaagtcaacactgcttctaatggcggtgttgaatg |
220 |
Q |
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| T |
6428143 |
catactgagcaagagggcaacaaggcaaaggttgcaaagaattctgttgaagaagtcaacactgcttctaatggcggtgttgaatg |
6428228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 6372462 - 6372644
Alignment:
| Q |
39 |
tacaatggagaatcgttgtttgaagttttaatatttcatggtgagaccttatgcgagaaagcgggctcctattttgtaagaaagtgtggacaaggtcata |
138 |
Q |
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| T |
6372462 |
tacaatggtgaatcactctttgaggttttaatctttaatggagaaagcttatgtgagaaagcagcttcttattttgttctagaatgtggacaagctcata |
6372561 |
T |
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| Q |
139 |
ctgagcaagagggcaacaaggcaaaggttgcaaagaattctgttgaagaagtcaacactgctt-ctaatggcggtgttgaatg |
220 |
Q |
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| T |
6372562 |
ctgaacaagggggcaacaaaggaaagaattcaaacaatttttttgaagaagtcaatactccttcctaatggtggtgttgaatg |
6372644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 6357653 - 6357816
Alignment:
| Q |
57 |
tttgaagttttaatatttcatggtgagaccttatgcgagaaagcgggctcctattttgtaagaaagtgtggacaaggtcatactgagcaagagggcaaca |
156 |
Q |
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| T |
6357653 |
tttgaagttttaatctttcatggagatagtttctgtgagaaggcagcttcttattttgttggaaaatgtggacaagctcatactgaacaagtgtgtaaca |
6357752 |
T |
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| Q |
157 |
aggcaaaggttgcaaagaattctgttgaagaagtcaacactgcttctaatggcggtgttgaatg |
220 |
Q |
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| T |
6357753 |
agggaaaaagctccaataattctgttgaagaagtcagtactccttctaatggcagtgttgaatg |
6357816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 6379420 - 6379485
Alignment:
| Q |
155 |
caaggcaaaggttgcaaagaattctgttgaagaagtcaacactgcttctaatggcggtgttgaatg |
220 |
Q |
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| T |
6379420 |
caaggcaaaggacacaaacacttctgttgaagaagtcaatactccttctaatggcagtgttgaatg |
6379485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 6415552 - 6415592
Alignment:
| Q |
39 |
tacaatggagaatcgttgtttgaagttttaatatttcatgg |
79 |
Q |
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| T |
6415552 |
tacaatggtgaatcgttgtttgaagttttaatctttgatgg |
6415592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 6420847 - 6420887
Alignment:
| Q |
177 |
tctgttgaagaagtcaacactgcttctaatggcggtgttga |
217 |
Q |
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| T |
6420847 |
tctgttgaagaagtcaatactgcttctaatggtggcgttga |
6420887 |
T |
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