View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_low_78 (Length: 224)

Name: NF16817_low_78
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_low_78
NF16817_low_78
[»] chr7 (14 HSPs)
chr7 (18-211)||(36703025-36703218)
chr7 (164-211)||(19278348-19278394)
chr7 (159-201)||(18802473-18802515)
chr7 (161-199)||(43006377-43006415)
chr7 (162-199)||(44114741-44114778)
chr7 (164-199)||(22744741-22744776)
chr7 (165-199)||(4858430-4858464)
chr7 (164-198)||(25153653-25153687)
chr7 (166-199)||(35128248-35128281)
chr7 (163-199)||(13446744-13446780)
chr7 (163-199)||(18670589-18670625)
chr7 (171-199)||(25155022-25155050)
chr7 (163-199)||(33458304-33458340)
chr7 (163-199)||(46675020-46675056)
[»] chr4 (20 HSPs)
chr4 (159-211)||(31711082-31711133)
chr4 (156-199)||(29688060-29688103)
chr4 (161-199)||(33377450-33377488)
chr4 (162-198)||(6616298-6616334)
chr4 (161-201)||(15786944-15786984)
chr4 (159-199)||(33376208-33376248)
chr4 (163-199)||(37560385-37560421)
chr4 (163-199)||(39590935-39590971)
chr4 (155-199)||(44664412-44664456)
chr4 (172-211)||(28103561-28103599)
chr4 (164-198)||(11115067-11115101)
chr4 (164-198)||(54372741-54372775)
chr4 (161-198)||(11113734-11113771)
chr4 (165-198)||(27408759-27408792)
chr4 (162-199)||(37558991-37559028)
chr4 (163-211)||(15446745-15446792)
chr4 (162-198)||(39592376-39592412)
chr4 (163-199)||(46796112-46796148)
chr4 (162-198)||(49923883-49923919)
chr4 (162-198)||(54374039-54374075)
[»] chr2 (9 HSPs)
chr2 (160-211)||(7038407-7038457)
chr2 (164-199)||(37867751-37867786)
chr2 (161-199)||(42027185-42027223)
chr2 (164-198)||(42596555-42596589)
chr2 (162-211)||(6706919-6706967)
chr2 (163-208)||(7036960-7037004)
chr2 (163-199)||(11575541-11575577)
chr2 (161-201)||(21010578-21010618)
chr2 (175-211)||(39110083-39110118)
[»] chr8 (20 HSPs)
chr8 (161-211)||(3237715-3237764)
chr8 (161-199)||(31623898-31623936)
chr8 (162-199)||(36756057-36756094)
chr8 (160-201)||(43275741-43275782)
chr8 (161-201)||(37977-38017)
chr8 (163-199)||(38589815-38589851)
chr8 (164-199)||(38591093-38591128)
chr8 (165-199)||(4810209-4810243)
chr8 (149-199)||(21551902-21551952)
chr8 (149-199)||(21552948-21552998)
chr8 (165-199)||(36940119-36940153)
chr8 (164-198)||(39544925-39544959)
chr8 (161-199)||(41866886-41866924)
chr8 (164-201)||(35945521-35945558)
chr8 (162-199)||(43386788-43386825)
chr8 (162-211)||(45385869-45385917)
chr8 (163-199)||(3271892-3271928)
chr8 (163-199)||(10053830-10053866)
chr8 (164-200)||(29738286-29738322)
chr8 (163-199)||(30864541-30864577)
[»] chr6 (11 HSPs)
chr6 (160-200)||(15435683-15435723)
chr6 (161-211)||(27438782-27438831)
chr6 (163-199)||(5311273-5311309)
chr6 (165-199)||(27440261-27440295)
chr6 (165-199)||(33802103-33802137)
chr6 (164-201)||(8412400-8412437)
chr6 (165-198)||(18139574-18139607)
chr6 (164-197)||(34084220-34084253)
chr6 (175-211)||(9899571-9899606)
chr6 (161-201)||(9927598-9927638)
chr6 (163-199)||(31738357-31738393)
[»] chr5 (15 HSPs)
chr5 (159-199)||(5382932-5382972)
chr5 (161-199)||(19825866-19825904)
chr5 (161-198)||(30916205-30916242)
chr5 (163-199)||(19525374-19525410)
chr5 (159-199)||(24805281-24805321)
chr5 (163-199)||(41905169-41905205)
chr5 (162-197)||(6629724-6629759)
chr5 (164-199)||(18677971-18678006)
chr5 (158-208)||(1663176-1663225)
chr5 (161-211)||(5061020-5061069)
chr5 (162-199)||(6914898-6914935)
chr5 (171-200)||(22812472-22812501)
chr5 (163-199)||(6914709-6914745)
chr5 (171-199)||(10085931-10085959)
chr5 (163-199)||(12936188-12936224)
[»] scaffold1974 (1 HSPs)
scaffold1974 (162-201)||(712-751)
[»] scaffold1878 (1 HSPs)
scaffold1878 (162-201)||(523-562)
[»] scaffold0290 (2 HSPs)
scaffold0290 (162-201)||(9562-9601)
scaffold0290 (163-199)||(8373-8409)
[»] chr3 (19 HSPs)
chr3 (164-211)||(54654041-54654087)
chr3 (161-201)||(8371212-8371252)
chr3 (163-199)||(41387519-41387555)
chr3 (163-199)||(42633972-42634008)
chr3 (162-198)||(48338204-48338240)
chr3 (163-199)||(54752610-54752646)
chr3 (164-199)||(17350188-17350223)
chr3 (162-201)||(53809577-53809616)
chr3 (161-211)||(47855413-47855462)
chr3 (163-208)||(51825699-51825743)
chr3 (165-198)||(53808314-53808347)
chr3 (175-211)||(10817814-10817849)
chr3 (175-211)||(18024576-18024611)
chr3 (175-211)||(30385192-30385227)
chr3 (163-211)||(33563943-33563990)
chr3 (159-211)||(34901642-34901693)
chr3 (163-199)||(41386124-41386160)
chr3 (175-211)||(42592411-42592446)
chr3 (171-199)||(43101896-43101924)
[»] scaffold0003 (2 HSPs)
scaffold0003 (161-211)||(48531-48580)
scaffold0003 (165-199)||(47066-47100)
[»] chr1 (19 HSPs)
chr1 (162-199)||(3978037-3978074)
chr1 (162-199)||(25785961-25785998)
chr1 (163-199)||(25787250-25787286)
chr1 (160-199)||(14312766-14312805)
chr1 (157-200)||(28309750-28309793)
chr1 (161-211)||(3979388-3979437)
chr1 (164-198)||(38451547-38451581)
chr1 (164-198)||(47411535-47411569)
chr1 (171-201)||(48467263-48467293)
chr1 (164-198)||(52439372-52439406)
chr1 (166-199)||(13929292-13929325)
chr1 (162-211)||(20953281-20953329)
chr1 (162-211)||(29001197-29001245)
chr1 (171-199)||(13930761-13930789)
chr1 (163-199)||(14071289-14071325)
chr1 (162-198)||(47560132-47560168)
chr1 (171-199)||(49139803-49139831)
chr1 (162-198)||(49619906-49619942)
chr1 (163-199)||(50678360-50678396)
[»] scaffold0024 (1 HSPs)
scaffold0024 (160-199)||(73072-73111)
[»] scaffold0013 (2 HSPs)
scaffold0013 (162-199)||(96901-96938)
scaffold0013 (162-198)||(96153-96189)
[»] scaffold0839 (1 HSPs)
scaffold0839 (163-199)||(19-55)
[»] scaffold0046 (1 HSPs)
scaffold0046 (163-199)||(23400-23436)
[»] scaffold0025 (1 HSPs)
scaffold0025 (161-201)||(56784-56824)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 36703218 - 36703025
Alignment:
Q  18 gtttctgcatctgcacttagctctttttgcactcatagtctgcataaagtaattaaaatatatattagtgcatgcatgaactaatcatgatttactgcat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36703218 gtttctgcatctgcacttagctctttttgcactcatagtctgcataaagtaattaaaatatatattagtgcatgcatgaactaatcatgattaactgcat 36703119  T
Q  118 ggaaatgaataggggaatataattcactaacttataaatttaattaggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36703118 ggaaatgaataggggaatataattcactaacttataaatttaattaggcttaatacatcatttggtcccttaacttattttttggatttcattt 36703025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 19278348 - 19278394
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  19278348 ggcttaatacatcatttggtcccttaactta-tttttggatttcattt 19278394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 18802515 - 18802473
Alignment:
Q  159 aattaggcttagtacatcatttggtcccttaacttattttttg 201  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  18802515 aattagacttaatacatcatttggtcccttaacttattttttg 18802473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 43006377 - 43006415
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  43006377 ttaggcttaatacatcatttggtcccttaacttattttt 43006415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 44114778 - 44114741
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||| |||||||||||||||||||||||||||||    
T  44114778 taggcttaatacatcatttggtcccttaacttattttt 44114741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 22744741 - 22744776
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||| |||||||||||||||||||||||||||||    
T  22744741 ggcttaatacatcatttggtcccttaacttattttt 22744776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 4858464 - 4858430
Alignment:
Q  165 gcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||| |||||||||||||||||||||||||||||    
T  4858464 gcttaatacatcatttggtcccttaacttattttt 4858430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 25153653 - 25153687
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||| ||||||||||||||||||||||||||||    
T  25153653 ggcttaatacatcatttggtcccttaacttatttt 25153687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 35128281 - 35128248
Alignment:
Q  166 cttagtacatcatttggtcccttaacttattttt 199  Q
    |||| |||||||||||||||||||||||||||||    
T  35128281 cttaatacatcatttggtcccttaacttattttt 35128248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 13446780 - 13446744
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  13446780 aggcttaatacatcatttggtcacttaacttattttt 13446744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 18670625 - 18670589
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  18670625 aggcttaatacatcctttggtcccttaacttattttt 18670589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 25155050 - 25155022
Alignment:
Q  171 tacatcatttggtcccttaacttattttt 199  Q
    |||||||||||||||||||||||||||||    
T  25155050 tacatcatttggtcccttaacttattttt 25155022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 33458304 - 33458340
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  33458304 aggcttaatacatcatttggtcctttaacttattttt 33458340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 46675056 - 46675020
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  46675056 aggcttaatacatcatttgatcccttaacttattttt 46675020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 31711082 - 31711133
Alignment:
Q  159 aattaggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  31711082 aattaggcttaatacatcatttggtcccttaactta-tttttggatttcattt 31711133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 29688103 - 29688060
Alignment:
Q  156 tttaattaggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  29688103 tttaattaggcttaatacattatttggtcccttaacttattttt 29688060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 33377488 - 33377450
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  33377488 ttaggcttaatacatcatttggtcccttaacttattttt 33377450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 6616334 - 6616298
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||||| ||||||||||||||||||||||||||||    
T  6616334 taggcttaatacatcatttggtcccttaacttatttt 6616298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 15786944 - 15786984
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttg 201  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  15786944 ttaggcttaatacatcatttggtccattaacttattttttg 15786984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 33376208 - 33376248
Alignment:
Q  159 aattaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  33376208 aattaggcttaatacatcatttggtctcttaacttattttt 33376248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 37560421 - 37560385
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  37560421 aggcttaatacatcatttggtcccttaacttattttt 37560385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 39590935 - 39590971
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  39590935 aggcttaatacatcatttggtcccttaacttattttt 39590971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 44664456 - 44664412
Alignment:
Q  155 atttaattaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||    
T  44664456 atttatttaggcttaatacatcctttggtcccttaacttattttt 44664412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 28103599 - 28103561
Alignment:
Q  172 acatcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  28103599 acatcatttggtcccttaacttat-ttttggatttcattt 28103561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 11115101 - 11115067
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||| ||||||||||||||||||||||||||||    
T  11115101 ggcttaatacatcatttggtcccttaacttatttt 11115067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 54372741 - 54372775
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||| ||||||||||||||||||||||||||||    
T  54372741 ggcttaatacatcatttggtcccttaacttatttt 54372775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 11113734 - 11113771
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttatttt 198  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  11113734 ttaggcttaatacatcatttggtcacttaacttatttt 11113771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 27408759 - 27408792
Alignment:
Q  165 gcttagtacatcatttggtcccttaacttatttt 198  Q
    ||||| ||||||||||||||||||||||||||||    
T  27408759 gcttaatacatcatttggtcccttaacttatttt 27408792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 37558991 - 37559028
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  37558991 taggcttaatacatcatttggttccttaacttattttt 37559028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 15446792 - 15446745
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    ||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  15446792 aggcttaatacatgctttggtcccttaacttat-ttttggatttcattt 15446745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 39592412 - 39592376
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||||| || |||||||||||||||||||||||||    
T  39592412 taggcttaatatatcatttggtcccttaacttatttt 39592376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 46796148 - 46796112
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  46796148 aggcttaatacatcgtttggtcccttaacttattttt 46796112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 49923919 - 49923883
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||||| || |||||||||||||||||||||||||    
T  49923919 taggcttaatatatcatttggtcccttaacttatttt 49923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 54374075 - 54374039
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  54374075 taggcttaatacatcatttgatcccttaacttatttt 54374039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 7038457 - 7038407
Alignment:
Q  160 attaggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  7038457 attaggcttaatacatcatttggtcccttaacttat-ttttggatttcattt 7038407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 37867751 - 37867786
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||| |||||||||||||||||||||||||||||    
T  37867751 ggcttaatacatcatttggtcccttaacttattttt 37867786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 42027185 - 42027223
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  42027185 ttaggcttaatacatcgtttggtcccttaacttattttt 42027223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 42596555 - 42596589
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||| ||||||||||||||||||||||||||||    
T  42596555 ggcttaatacatcatttggtcccttaacttatttt 42596589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 6706919 - 6706967
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||| |||||  ||||||||||||||||| ||||||||||||||||    
T  6706919 taggcttaatacatgctttggtcccttaactta-tttttggatttcattt 6706967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 7036960 - 7037004
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttttggatttca 208  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||||    
T  7036960 aggcttaatacatcatttggtcctttaactta-tttttggatttca 7037004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 11575577 - 11575541
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  11575577 aggcttaatacatcatttggtccattaacttattttt 11575541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 21010618 - 21010578
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttg 201  Q
    ||||||||| || |||||||| |||||||||||||||||||    
T  21010618 ttaggcttaatatatcatttgatcccttaacttattttttg 21010578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 39110083 - 39110118
Alignment:
Q  175 tcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||||||||||||||||||||||| ||||||||    
T  39110083 tcatttggtcccttaacttattttttgg-tttcattt 39110118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 3237764 - 3237715
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  3237764 ttaggcttaatacatcatttggtcccttaacttat-ttttggatttcattt 3237715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 31623898 - 31623936
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  31623898 ttaggcttaatacatcatttggtcccttaacttattttt 31623936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 36756057 - 36756094
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||| |||||||||||||||||||||||||||||    
T  36756057 taggcttaatacatcatttggtcccttaacttattttt 36756094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 43275741 - 43275782
Alignment:
Q  160 attaggcttagtacatcatttggtcccttaacttattttttg 201  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  43275741 attaggcttaatacatcatttggtctcttaacttattttttg 43275782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 37977 - 38017
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttg 201  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  37977 ttaggcttaatacatcgtttggtcccttaacttattttttg 38017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 38589815 - 38589851
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  38589815 aggcttaatacatcatttggtcccttaacttattttt 38589851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 38591128 - 38591093
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||| |||||||||||||||||||||||||||||    
T  38591128 ggcttaatacatcatttggtcccttaacttattttt 38591093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 4810243 - 4810209
Alignment:
Q  165 gcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||||||||||| ||||||||||||||||||    
T  4810243 gcttagtacatcatttcgtcccttaacttattttt 4810209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 21551902 - 21551952
Alignment:
Q  149 ttataaatttaattaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||||| || |||||| |||||  ||||||||||||||||||||||    
T  21551902 ttataaatttatttgggcttaatacatgctttggtcccttaacttattttt 21551952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 21552948 - 21552998
Alignment:
Q  149 ttataaatttaattaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||||| || |||||| |||||  ||||||||||||||||||||||    
T  21552948 ttataaatttatttgggcttaatacatgctttggtcccttaacttattttt 21552998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 36940153 - 36940119
Alignment:
Q  165 gcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||| |||||||||||||||||||||||||||||    
T  36940153 gcttaatacatcatttggtcccttaacttattttt 36940119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 39544925 - 39544959
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||| ||||||||||||||||||||||||||||    
T  39544925 ggcttaatacatcatttggtcccttaacttatttt 39544959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 41866886 - 41866924
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  41866886 ttaggcttaatacaccatttggtcccttaacttattttt 41866924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 35945558 - 35945521
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttattttttg 201  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  35945558 ggcttaatacattatttggtcccttaacttattttttg 35945521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 43386825 - 43386788
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  43386825 taggcttaatacatcatatggtcccttaacttattttt 43386788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 45385917 - 45385869
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  45385917 taggcttaatacatgctttggtcccttaacttat-ttttggatttcattt 45385869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 3271892 - 3271928
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  3271892 aggcttaatacatgatttggtcccttaacttattttt 3271928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 10053866 - 10053830
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  10053866 aggcttaatacatcatttagtcccttaacttattttt 10053830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 29738286 - 29738322
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttatttttt 200  Q
    |||||| |||||| |||||||||||||||||||||||    
T  29738286 ggcttaatacatcgtttggtcccttaacttatttttt 29738322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 30864577 - 30864541
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  30864577 aggcttaatacatgatttggtcccttaacttattttt 30864541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 15435683 - 15435723
Alignment:
Q  160 attaggcttagtacatcatttggtcccttaacttatttttt 200  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  15435683 attaggcttaatacatcatttggtcccttaacttatttttt 15435723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 27438782 - 27438831
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||||||||    
T  27438782 ttaggtttaatacatcatttggtcccttaactta-tttttggatttcattt 27438831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 5311273 - 5311309
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  5311273 aggcttaatacatcatttggtcccttaacttattttt 5311309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 27440295 - 27440261
Alignment:
Q  165 gcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||| |||||||||||||||||||||||||||||    
T  27440295 gcttaatacatcatttggtcccttaacttattttt 27440261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 33802137 - 33802103
Alignment:
Q  165 gcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||| |||||||||||||||||||||||||||||    
T  33802137 gcttaatacatcatttggtcccttaacttattttt 33802103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 8412437 - 8412400
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttattttttg 201  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  8412437 ggcttaatacattatttggtcccttaacttattttttg 8412400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 18139607 - 18139574
Alignment:
Q  165 gcttagtacatcatttggtcccttaacttatttt 198  Q
    ||||| ||||||||||||||||||||||||||||    
T  18139607 gcttaatacatcatttggtcccttaacttatttt 18139574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 34084253 - 34084220
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttattt 197  Q
    |||||| |||||||||||||||||||||||||||    
T  34084253 ggcttaatacatcatttggtcccttaacttattt 34084220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 9899571 - 9899606
Alignment:
Q  175 tcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9899571 tcatttggtcccttaacttattttttgg-tttcattt 9899606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 9927598 - 9927638
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttg 201  Q
    ||||||||| |||| ||| ||||||||||||||||||||||    
T  9927598 ttaggcttaatacagcatctggtcccttaacttattttttg 9927638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 31738357 - 31738393
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  31738357 aggcttaatacatcctttggtcccttaacttattttt 31738393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 5382932 - 5382972
Alignment:
Q  159 aattaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  5382932 aattaggcttaatacatcatttggtcccttaacttattttt 5382972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 19825866 - 19825904
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  19825866 ttaggcttaatacatcatttggtcccttaacttattttt 19825904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 30916242 - 30916205
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttatttt 198  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  30916242 ttaggcttaatacatcatttggtcccttaacttatttt 30916205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 19525410 - 19525374
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  19525410 aggcttaatacatcatttggtcccttaacttattttt 19525374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 24805281 - 24805321
Alignment:
Q  159 aattaggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  24805281 aattaggcttaatacatcatttggtctcttaacttattttt 24805321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 41905169 - 41905205
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41905169 aggcttaatacatcatttggtcccttaacttattttt 41905205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 6629724 - 6629759
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattt 197  Q
    |||||||| |||||||||||||||||||||||||||    
T  6629724 taggcttaatacatcatttggtcccttaacttattt 6629759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 18677971 - 18678006
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||| |||||||||||||||||||||||||||||    
T  18677971 ggcttaatacatcatttggtcccttaacttattttt 18678006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 1663176 - 1663225
Alignment:
Q  158 taattaggcttagtacatcatttggtcccttaacttattttttggatttca 208  Q
    |||| ||||||| |||||||||| ||||||||||||| |||||||||||||    
T  1663176 taataaggcttaatacatcatttagtcccttaactta-tttttggatttca 1663225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 5061020 - 5061069
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    ||||||||| |||||  ||||||||||||||||| ||||||||||||||||    
T  5061020 ttaggcttaatacatgctttggtcccttaactta-tttttggatttcattt 5061069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 6914935 - 6914898
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  6914935 taggcttaatacatgatttggtcccttaacttattttt 6914898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 22812501 - 22812472
Alignment:
Q  171 tacatcatttggtcccttaacttatttttt 200  Q
    ||||||||||||||||||||||||||||||    
T  22812501 tacatcatttggtcccttaacttatttttt 22812472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 6914709 - 6914745
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||||||||  ||||||||||||||||||||||    
T  6914709 aggcttagtacatgctttggtcccttaacttattttt 6914745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 10085959 - 10085931
Alignment:
Q  171 tacatcatttggtcccttaacttattttt 199  Q
    |||||||||||||||||||||||||||||    
T  10085959 tacatcatttggtcccttaacttattttt 10085931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 12936224 - 12936188
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  12936224 aggcttaatacatcatttagtcccttaacttattttt 12936188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 751 - 712
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttttg 201  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  751 taggcttaatacatcatttggtcccttaacttattttttg 712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 523 - 562
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttttg 201  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  523 taggcttaatacatcatttggtcccttaacttattttttg 562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 9601 - 9562
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttttg 201  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  9601 taggcttaatacatcatttggtcccttaacttattttttg 9562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 8373 - 8409
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| | |||||||||||||||||||||||||||    
T  8373 aggcttaatccatcatttggtcccttaacttattttt 8409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 54654087 - 54654041
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  54654087 ggcttaatacatcatttggtcccttaacttat-ttttggatttcattt 54654041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 8371212 - 8371252
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttg 201  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  8371212 ttaggcttaatacatcatttgatcccttaacttattttttg 8371252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 41387555 - 41387519
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41387555 aggcttaatacatcatttggtcccttaacttattttt 41387519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 42634008 - 42633972
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  42634008 aggcttaatacatcatttggtcccttaacttattttt 42633972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 48338240 - 48338204
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||||| ||||||||||||||||||||||||||||    
T  48338240 taggcttaatacatcatttggtcccttaacttatttt 48338204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 54752610 - 54752646
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  54752610 aggcttaatacatcatttggtcccttaacttattttt 54752646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 17350223 - 17350188
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||| |||||||||||||||||||||||||||||    
T  17350223 ggcttaatacatcatttggtcccttaacttattttt 17350188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 53809616 - 53809577
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttttg 201  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  53809616 taggcttaatacatcatttagtcccttaacttattttttg 53809577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 47855462 - 47855413
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    ||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  47855462 ttaggcttaatacatgctttggtcccttaacttat-ttttggatttcattt 47855413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 51825743 - 51825699
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttttggatttca 208  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||    
T  51825743 aggcttaatatatcatttggtcccttaacttat-ttttggatttca 51825699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 53808314 - 53808347
Alignment:
Q  165 gcttagtacatcatttggtcccttaacttatttt 198  Q
    ||||| ||||||||||||||||||||||||||||    
T  53808314 gcttaatacatcatttggtcccttaacttatttt 53808347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 10817849 - 10817814
Alignment:
Q  175 tcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||||||||||||||||||||||| ||||||||    
T  10817849 tcatttggtcccttaacttattttttgg-tttcattt 10817814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 18024576 - 18024611
Alignment:
Q  175 tcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||||||||||||||||||||||| ||||||||    
T  18024576 tcatttggtcccttaacttattttttgg-tttcattt 18024611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 30385192 - 30385227
Alignment:
Q  175 tcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30385192 tcatttggtcccttaacttattttttgg-tttcattt 30385227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 33563943 - 33563990
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    ||||||| |||||  ||||||||||||||||| ||||||||||||||||    
T  33563943 aggcttaatacatgttttggtcccttaactta-tttttggatttcattt 33563990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 34901642 - 34901693
Alignment:
Q  159 aattaggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    ||||||||||| |||||  |||| |||||||||||| ||||||||||||||||    
T  34901642 aattaggcttaatacatgctttgatcccttaactta-tttttggatttcattt 34901693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 41386124 - 41386160
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  41386124 aggcttaatacatcgtttggtcccttaacttattttt 41386160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 42592411 - 42592446
Alignment:
Q  175 tcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||||||||||||||||||||||| ||||||||    
T  42592411 tcatttggtcccttaacttattttttgg-tttcattt 42592446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 43101896 - 43101924
Alignment:
Q  171 tacatcatttggtcccttaacttattttt 199  Q
    |||||||||||||||||||||||||||||    
T  43101896 tacatcatttggtcccttaacttattttt 43101924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 48580 - 48531
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||||||||||    
T  48580 ttaggtttaatacatcatttggtcccttaacttat-ttttggatttcattt 48531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 47066 - 47100
Alignment:
Q  165 gcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||| |||||||||||||||||||||||||||||    
T  47066 gcttaatacatcatttggtcccttaacttattttt 47100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 3978037 - 3978074
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3978037 taggcttaatacatcatttggtcccttaacttattttt 3978074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 25785961 - 25785998
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||| |||||||||||||||||||||||||||||    
T  25785961 taggcttaatacatcatttggtcccttaacttattttt 25785998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 25787286 - 25787250
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  25787286 aggcttaatacatcatttggtcccttaacttattttt 25787250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 14312766 - 14312805
Alignment:
Q  160 attaggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  14312766 attaggcttaatacatgatttggtcccttaacttattttt 14312805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 28309750 - 28309793
Alignment:
Q  157 ttaattaggcttagtacatcatttggtcccttaacttatttttt 200  Q
    ||||||||||||| |||||  |||||||||||||||||||||||    
T  28309750 ttaattaggcttaatacatgctttggtcccttaacttatttttt 28309793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 3979437 - 3979388
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    ||||||||  ||||| ||||||||||||||||||| |||||||||||||||    
T  3979437 ttaggcttgatacattatttggtcccttaacttat-ttttggatttcattt 3979388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 38451547 - 38451581
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||| ||||||||||||||||||||||||||||    
T  38451547 ggcttaatacatcatttggtcccttaacttatttt 38451581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 47411569 - 47411535
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||| ||||||||||||||||||||||||||||    
T  47411569 ggcttaatacatcatttggtcccttaacttatttt 47411535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 48467263 - 48467293
Alignment:
Q  171 tacatcatttggtcccttaacttattttttg 201  Q
    |||||||||||||||||||||||||||||||    
T  48467263 tacatcatttggtcccttaacttattttttg 48467293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 52439406 - 52439372
Alignment:
Q  164 ggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||| ||||||||||||||||||||||||||||    
T  52439406 ggcttaatacatcatttggtcccttaacttatttt 52439372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 13929292 - 13929325
Alignment:
Q  166 cttagtacatcatttggtcccttaacttattttt 199  Q
    |||| |||||||||||||||||||||||||||||    
T  13929292 cttaatacatcatttggtcccttaacttattttt 13929325  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 20953281 - 20953329
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||| |||||  ||||||||||||||||| ||||||||||||||||    
T  20953281 taggcttaatacatgctttggtcccttaactta-tttttggatttcattt 20953329  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 29001245 - 29001197
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttttggatttcattt 211  Q
    |||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  29001245 taggcttaatacatgctttggtcccttaacttat-ttttggatttcattt 29001197  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 13930789 - 13930761
Alignment:
Q  171 tacatcatttggtcccttaacttattttt 199  Q
    |||||||||||||||||||||||||||||    
T  13930789 tacatcatttggtcccttaacttattttt 13930761  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 14071325 - 14071289
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  14071325 aggcttaatacatcatttggtcccttaatttattttt 14071289  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 47560132 - 47560168
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  47560132 taggcttaatacatcatttggtcccttaccttatttt 47560168  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 49139803 - 49139831
Alignment:
Q  171 tacatcatttggtcccttaacttattttt 199  Q
    |||||||||||||||||||||||||||||    
T  49139803 tacatcatttggtcccttaacttattttt 49139831  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 49619942 - 49619906
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||||| |||||||||||||||||||| |||||||    
T  49619942 taggcttaatacatcatttggtcccttaatttatttt 49619906  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 50678360 - 50678396
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  50678360 aggcttaatacatgatttggtcccttaacttattttt 50678396  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 73111 - 73072
Alignment:
Q  160 attaggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  73111 attaggcttaatacatcatttagtcccttaacttattttt 73072  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 96938 - 96901
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttattttt 199  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  96938 taggcttaatacatcatttgatcccttaacttattttt 96901  T

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Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 96153 - 96189
Alignment:
Q  162 taggcttagtacatcatttggtcccttaacttatttt 198  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  96153 taggcttaatacatcatttggtccattaacttatttt 96189  T

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Target: scaffold0839 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 19 - 55
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  19 aggcttaatacatgatttggtcccttaacttattttt 55  T

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Target: scaffold0046 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 23400 - 23436
Alignment:
Q  163 aggcttagtacatcatttggtcccttaacttattttt 199  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  23400 aggcttaatacatcatatggtcccttaacttattttt 23436  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 56824 - 56784
Alignment:
Q  161 ttaggcttagtacatcatttggtcccttaacttattttttg 201  Q
    |||| |||| || ||||||||||||||||||||||||||||    
T  56824 ttagacttaataaatcatttggtcccttaacttattttttg 56784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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